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Properties
| Property Name | Value |
|---|
| Product | aaa family cdc48 subfamily |
| Orig transcript id | gnl|cribi|Naga_100034g50.6288.mrna |
| Orig protein id | gnl|cribi|Naga_100034g50.6288 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002460.1 | supercontig | CM002460.1:299569..301369 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2930 ID=rna2930|Name=rna2930|organism=Nannochloropsis gaditana|type=mRNA|length=1954bp
CTTTTCACATCTCGTTCAATCTCGTGTTGAGCAACAGATAAGCATCCGCA
GGCATATGGAGGACATTCACATTAGCAGGCCCAAGGCGTATCGATTAGCT
TCCCAGTATTCTGACTCATCAAATGGCTCGTCGAATGTGCAAACCGCCGT
TACAAGCACTGAAGACCGCCTCGAAGATCGTCGCCGACAATCGCTTAGGG
TCATGGCAGCCATGAGCCTAAATAAATCATACAGTGACGCAATTAACGGA
GTTTCCATCAACAAAAGTGATCTAGAGCATGAGGAAGATTGTACGTCGAA
ACTGCAAGAAATATTCATTCGTGCGAAAGAGTCTGGCATGACTTATGATG
ATATTTTTAAAAAATTCTGTCTTAAACATGAAGTCACCAGCACTATTTCA
TCCAAAGCCTTCGTAGCTGCCCTGAGGAAACTCAGTCCGGATATTTTCTG
CCTGACGGAGACTGATGTCGGCCTTCTTGTGAGAAAATTTGAAGTAAACG
AAGACAAAGTAGTGTCTTTGGACGAATTGAAAACTTTCGCGTTGGCGATC
CCACACGTTTCATGGAAAGTGGAGCGCATTCGACGTCTATCTTCAGCTTT
ATCTTTGAGTGACAGCACAAACAGATCTGACTCTGGCCGGGCGAGCGATT
CGACAGTCACGCGGCAACCTGCACCTCGCAAGGCTGCATCACGTAGATCG
CTCCGTCAAGCTGTCAGCTTTTCCCGTCAAACAACGTTTCCAAAGCCACT
CTTTTCTGAGAAACGAAAGAAGCAGGATACGAAAACCTTTTCATCGACTT
CGATATCGCCTATTTTACCAAGTACTGCTTCAATTGCATCCACGCGTGTG
GACGACAGGAGCTTTTCCCCAGAATGTTGCAGGAGTGACTATGAGGGTTC
ACAGCGAGAGCAGCCTCGCATTACGTCACATTTTACTATCGAAAAGCCCA
CAATAGCTCTGAGTTTGCTATCAACTACTTCTAAACTCATGTGGCGCGAA
CAAGAACACCTCATATTAAGGCTCTATGGCCACGATGACCCTCCTCGCAT
CATCGCCGTGACGGCAAAGAGCAAGGGGACAGGAAAGAACTATCCCGCTA
TTTATCTTGACCGCGACAAGATACCGCTCAATCGAAAGGCCATTGAGGCC
CTAGCAGATGCTCTACCCTCTGATGCGGGCGCTCATGGACAGAGCATCGA
TGCGTTGACCTCTCTCCAACGGGCTGAGCGTGAATATCTCGCTCAGTATG
TGGTGCAGCGGCTTGCTCTGGAAGACGTCTCACGCGAAAGCGGGAGGGAG
ACCGCCAAAAGGATGTGCATTGTTCGGCAAACAGGAGATCCGTGGGAAAA
GCTCGCCGTCGAGAAGCCCAAGCTCATTAAGTCCCCTCGATCAAGCCCCG
AAATGCGCCTCCGACCCGCCATGGACTTTCATCATACCTCACTGGAGGTG
AAGAACATGAATTACGAAACTAAACGTCAAAGTAATGTTGCCAAATTCTA
TTCAAACCTGAGCAAGACAGAATTGAAGGATGTACCATCGACATGAGAAG
TGGATGAGTCACAACGGCAAGTAGAGTGTACACCCCGATGTTCAAGCGTG
GCTACACGAATGCAAAGATAATGACAGTAATATGGAGGGGACCATGCCTT
ATCCAAAAAAAATCTTCTCTTGTGAGGTTGGAAAGAATTATTATGCCTTC
TTTTGAGTCATACTAAGGAGCTTTTTAATAGGGAGGTAGAGGACGTAATG
ATTTGAGAGGCTCATCATTTTCGATTTCCTTCCAACGTGGTGCTTTTGAA
GCCGTGCATTGGAACGTCACCTTCAGTAAGTACATCTCAGAACTCCATGC
CTCGTCAGACTGAATCCAACATGGGCCGGACAGGACCAAAAAAGTACTCT
GTCCAACATCGTTGATTCAATGCCAATACATTTGACCAAAATTGCGTTTC
ACCT back to topprotein sequence of rna2930 >rna2930-protein ID=rna2930-protein|Name=rna2930|organism=Nannochloropsis gaditana|type=polypeptide|length=575bp
MGLGQFPPHSDKKCQHRRSAIEADLPGLEEDIDLLLRLIDGFSRNGGGSR
DQSFCQAVRGALLEGGPGAGKTALAKSLARHGGLPSYYCSCPSLFSRDRG
DAERGLQEIFQTCIQKAACSEKESCLLVLDDLDCIGKDRKKARHVSDLGI
LAMLLECLDHLRGAHVFVLAIAGDASLIDVGLLQPGRLEITLKLSSLKQE
QREKILANLLGKLNTKSPRAVEESSIQYSGRLLDSLACRTRGFNGADLAY
LCSSALTSALRRSQSSDHVCIEEEDWEVAMEGAHPIDIPWLFVEGARLSD
LAGMDEIIQTVSETILQPLLQPEALRAMGVPRASFGVLLYGPSGTGKTTL
GLALAAAAQSHASFLAVECSELVNKVVGESERAVARLFQVARHRAPCILF
LDHVEAIAGRRGFDTSSEQTMDRMLSTLLMEMDGLTAGDCMHDRTGSDMV
IVVAATNLLSMLDEAFLRPGRLDILIEMALPDKEARAAIFLLHFSRMPLR
FDTAVRGLKSEKNSTFTPLHEFAETMADLSEGLSGADIQGLCQEAALLAL
REDLDRSYLLPRHVMEALDVKRRNT back to topmRNA from alignment at CM002460.1:299569..301369- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2930 ID=rna2930|Name=rna2930|organism=Nannochloropsis gaditana|type=mRNA|length=1801bp|location=Sequence derived from alignment at CM002460.1:299569..301369- (Nannochloropsis gaditana)
ATGGGTTTAGGGCAGTTTCCTCCTCATTCAGATAAAAAATGCCAACACCG
CCGCAGCGCAATTGAGGCGGATCTTCCGGGATTAGAAGAGGACATTGATC
TGCTTCTCCGCCTTATTGATGGATTTAGTCGGAATGGTGGTGGCAGTAGA
GATCAATCATTTTGTCAAGCTGTTCGCGGTGCCCTTTTGGAGGGCGGTCC
CGGTGCAGGCAAGACGGCATTGGCCAAGTCATTGGCTAGACACGGAGGCC
TCCCTTCGTACTATTGCTCGTGCCCCAGCTTATTCAGCAGGGACAGAGGA
GACGCAGAGAGAGGATTACAGGAAATTTTTCAGACTTGCATCCAAAAGGC
GGCTTGTAGCGAGAAGGAATCTTGCCTCCTGGTTCTGGACGATTTGGATT
GCATTGGAAAGGTAAGAGCGAATGGCGGTGTCATGCCCCGGTTAAGTCGT
CACGTCTCATCTCGTCACCGTATTTTTGTAAAAGGATCGCAAGAAGGCTC
GTCATGTAAGTGATCTGGGGATCCTTGCAATGCTGTTGGAGTGCCTCGAC
CATCTCCGCGGCGCCCACGTTTTTGTTTTAGCAATCGCAGGTGACGCCTC
GCTCATTGACGTCGGTCTCCTGCAACCAGGGCGTTTGGAAATTACTCTGA
AATTATCAAGCCTTAAGCAAGAGCAGAGAGAAAAAATTTTGGCAAATTTA
TTGGGGAAGTTGAACACAAAAAGTCCTCGGGCGGTGGAGGAAAGCAGTAT
CCAGTATTCAGGGCGTTTACTCGACTCCCTAGCATGCCGGACCAGGGGCT
TTAATGGTGCGGATCTTGCTTATTTGTGCTCAAGTGCCCTAACCTCCGCA
TTGAGACGAAGTCAAAGCTCGGACCATGTATGTATCGAGGAGGAAGATTG
GGAAGTGGCAATGGAGGGGGCCCATCCCATAGATATTCCCTGGCTGTTCG
TGGAAGGCGCTCGGCTTTCTGACCTCGCTGGGATGGACGAAATCATTCAA
ACAGTCTCCGAGACCATCCTGCAGCCACTCTTACAGCCTGAAGCCCTGCG
AGCCATGGGAGTGCCCCGAGCGTCTTTCGGTGTCCTATTGTACGGCCCGT
CGGGCACCGGAAAGACCACCTTAGGCCTGGCCTTGGCGGCAGCTGCGCAA
TCTCATGCGAGTTTTCTTGCAGTAGAATGTTCCGAGCTGGTGAACAAGGT
TGTCGGTGAGTCGGAACGTGCGGTGGCGCGGCTTTTCCAAGTCGCGCGTC
ATAGGGCTCCCTGCATTCTCTTTCTGGACCACGTAGAGGCGATTGCGGGA
AGGCGGGGGTTTGATACGTCTTCAGAGCAAACAATGGATCGCATGCTCAG
TACATTACTGATGGAGATGGACGGGTTGACAGCCGGCGACTGCATGCATG
ACAGGACAGGAAGTGATATGGTCATCGTTGTAGCTGCGACCAATCTTTTG
TCCATGCTCGACGAAGCTTTTTTGCGTCCGGGACGTCTGGACATCCTTAT
CGAGATGGCTTTACCCGACAAGGAGGCGCGTGCTGCAATTTTTTTGCTCC
ATTTTTCACGCATGCCCCTGCGTTTTGATACCGCGGTGAGGGGCTTGAAA
TCCGAGAAAAATTCAACCTTCACGCCTCTGCACGAATTTGCTGAAACCAT
GGCTGACTTGAGCGAGGGATTATCAGGTGCCGATATCCAGGGGTTGTGCC
AGGAAGCAGCCTTATTGGCTTTACGCGAGGACTTGGACCGCTCGTATCTC
CTTCCGAGACACGTGATGGAGGCATTGGATGTAAAAAGACGCAATACATA
G back to topCoding sequence (CDS) from alignment at CM002460.1:299569..301369- >rna2930 ID=rna2930|Name=rna2930|organism=Nannochloropsis gaditana|type=CDS|length=3456bp|location=Sequence derived from alignment at CM002460.1:299569..301369- (Nannochloropsis gaditana)
GATCGCAAGAAGGCTCGTCATGTAAGTGATCTGGGGATCCTTGCAATGCT
GTTGGAGTGCCTCGACCATCTCCGCGGCGCCCACGTTTTTGTTTTAGCAA
TCGCAGGTGACGCCTCGCTCATTGACGTCGGTCTCCTGCAACCAGGGCGT
TTGGAAATTACTCTGAAATTATCAAGCCTTAAGCAAGAGCAGAGAGAAAA
AATTTTGGCAAATTTATTGGGGAAGTTGAACACAAAAAGTCCTCGGGCGG
TGGAGGAAAGCAGTATCCAGTATTCAGGGCGTTTACTCGACTCCCTAGCA
TGCCGGACCAGGGGCTTTAATGGTGCGGATCTTGCTTATTTGTGCTCAAG
TGCCCTAACCTCCGCATTGAGACGAAGTCAAAGCTCGGACCATGTATGTA
TCGAGGAGGAAGATTGGGAAGTGGCAATGGAGGGGGCCCATCCCATAGAT
ATTCCCTGGCTGTTCGTGGAAGGCGCTCGGCTTTCTGACCTCGCTGGGAT
GGACGAAATCATTCAAACAGTCTCCGAGACCATCCTGCAGCCACTCTTAC
AGCCTGAAGCCCTGCGAGCCATGGGAGTGCCCCGAGCGTCTTTCGGTGTC
CTATTGTACGGCCCGTCGGGCACCGGAAAGACCACCTTAGGCCTGGCCTT
GGCGGCAGCTGCGCAATCTCATGCGAGTTTTCTTGCAGTAGAATGTTCCG
AGCTGGTGAACAAGGTTGTCGGTGAGTCGGAACGTGCGGTGGCGCGGCTT
TTCCAAGTCGCGCGTCATAGGGCTCCCTGCATTCTCTTTCTGGACCACGT
AGAGGCGATTGCGGGAAGGCGGGGGTTTGATACGTCTTCAGAGCAAACAA
TGGATCGCATGCTCAGTACATTACTGATGGAGATGGACGGGTTGACAGCC
GGCGACTGCATGCATGACAGGACAGGAAGTGATATGGTCATCGTTGTAGC
TGCGACCAATCTTTTGTCCATGCTCGACGAAGCTTTTTTGCGTCCGGGAC
GTCTGGACATCCTTATCGAGATGGCTTTACCCGACAAGGAGGCGCGTGCT
GCAATTTTTTTGCTCCATTTTTCACGCATGCCCCTGCGTTTTGATACCGC
GGTGAGGGGCTTGAAATCCGAGAAAAATTCAACCTTCACGCCTCTGCACG
AATTTGCTGAAACCATGGCTGACTTGAGCGAGGGATTATCAGGTGCCGAT
ATCCAGGGGTTGTGCCAGGAAGCAGCCTTATTGGCTTTACGCGAGGACTT
GGACCGCTCGTATCTCCTTCCGAGACACGTGATGGAGGCATTGGATGTAA
AAAGACGCAATACATAGATGGGTTTAGGGCAGTTTCCTCCTCATTCAGAT
AAAAAATGCCAACACCGCCGCAGCGCAATTGAGGCGGATCTTCCGGGATT
AGAAGAGGACATTGATCTGCTTCTCCGCCTTATTGATGGATTTAGTCGGA
ATGGTGGTGGCAGTAGAGATCAATCATTTTGTCAAGCTGTTCGCGGTGCC
CTTTTGGAGGGCGGTCCCGGTGCAGGCAAGACGGCATTGGCCAAGTCATT
GGCTAGACACGGAGGCCTCCCTTCGTACTATTGCTCGTGCCCCAGCTTAT
TCAGCAGGGACAGAGGAGACGCAGAGAGAGGATTACAGGAAATTTTTCAG
ACTTGCATCCAAAAGGCGGCTTGTAGCGAGAAGGAATCTTGCCTCCTGGT
TCTGGACGATTTGGATTGCATTGGAAAGGATCGCAAGAAGGCTCGTCATG
TAAGTGATCTGGGGATCCTTGCAATGCTGTTGGAGTGCCTCGACCATCTC
CGCGGCGCCCACGTTTTTGTTTTAGCAATCGCAGGTGACGCCTCGCTCAT
TGACGTCGGTCTCCTGCAACCAGGGCGTTTGGAAATTACTCTGAAATTAT
CAAGCCTTAAGCAAGAGCAGAGAGAAAAAATTTTGGCAAATTTATTGGGG
AAGTTGAACACAAAAAGTCCTCGGGCGGTGGAGGAAAGCAGTATCCAGTA
TTCAGGGCGTTTACTCGACTCCCTAGCATGCCGGACCAGGGGCTTTAATG
GTGCGGATCTTGCTTATTTGTGCTCAAGTGCCCTAACCTCCGCATTGAGA
CGAAGTCAAAGCTCGGACCATGTATGTATCGAGGAGGAAGATTGGGAAGT
GGCAATGGAGGGGGCCCATCCCATAGATATTCCCTGGCTGTTCGTGGAAG
GCGCTCGGCTTTCTGACCTCGCTGGGATGGACGAAATCATTCAAACAGTC
TCCGAGACCATCCTGCAGCCACTCTTACAGCCTGAAGCCCTGCGAGCCAT
GGGAGTGCCCCGAGCGTCTTTCGGTGTCCTATTGTACGGCCCGTCGGGCA
CCGGAAAGACCACCTTAGGCCTGGCCTTGGCGGCAGCTGCGCAATCTCAT
GCGAGTTTTCTTGCAGTAGAATGTTCCGAGCTGGTGAACAAGGTTGTCGG
TGAGTCGGAACGTGCGGTGGCGCGGCTTTTCCAAGTCGCGCGTCATAGGG
CTCCCTGCATTCTCTTTCTGGACCACGTAGAGGCGATTGCGGGAAGGCGG
GGGTTTGATACGTCTTCAGAGCAAACAATGGATCGCATGCTCAGTACATT
ACTGATGGAGATGGACGGGTTGACAGCCGGCGACTGCATGCATGACAGGA
CAGGAAGTGATATGGTCATCGTTGTAGCTGCGACCAATCTTTTGTCCATG
CTCGACGAAGCTTTTTTGCGTCCGGGACGTCTGGACATCCTTATCGAGAT
GGCTTTACCCGACAAGGAGGCGCGTGCTGCAATTTTTTTGCTCCATTTTT
CACGCATGCCCCTGCGTTTTGATACCGCGGTGAGGGGCTTGAAATCCGAG
AAAAATTCAACCTTCACGCCTCTGCACGAATTTGCTGAAACCATGGCTGA
CTTGAGCGAGGGATTATCAGGTGCCGATATCCAGGGGTTGTGCCAGGAAG
CAGCCTTATTGGCTTTACGCGAGGACTTGGACCGCTCGTATCTCCTTCCG
AGACACGTGATGGAGGCATTGGATGTAAAAAGACGCAATACATAGATGGG
TTTAGGGCAGTTTCCTCCTCATTCAGATAAAAAATGCCAACACCGCCGCA
GCGCAATTGAGGCGGATCTTCCGGGATTAGAAGAGGACATTGATCTGCTT
CTCCGCCTTATTGATGGATTTAGTCGGAATGGTGGTGGCAGTAGAGATCA
ATCATTTTGTCAAGCTGTTCGCGGTGCCCTTTTGGAGGGCGGTCCCGGTG
CAGGCAAGACGGCATTGGCCAAGTCATTGGCTAGACACGGAGGCCTCCCT
TCGTACTATTGCTCGTGCCCCAGCTTATTCAGCAGGGACAGAGGAGACGC
AGAGAGAGGATTACAGGAAATTTTTCAGACTTGCATCCAAAAGGCGGCTT
GTAGCGAGAAGGAATCTTGCCTCCTGGTTCTGGACGATTTGGATTGCATT
GGAAAG back to top
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