rna2928, rna2928 (mRNA) Nannochloropsis gaditana

Overview
Namerna2928
Unique Namerna2928
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2082
Alignment locationCM002460.1:291320..291526 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100248g9.4996.mrna
Orig protein idgnl|cribi|Naga_100248g9.4996
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:291320..291526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100248g9gene2809Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2928rna2928-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27752.1cds2920Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2928 ID=rna2928|Name=rna2928|organism=Nannochloropsis gaditana|type=mRNA|length=2082bp
ATGGTTTTGAGGCCTCAGCGCCAACGTCGCGCGACTGCCGTTGCTGCGGC
GGCCGTGGAAGAAAAAGAGGCTGTCGCCGCATCTTTTGCTCCTGTCGCAC
CGGCCATGGTGATGACTGGGCAGCCTTCTTTCAAACTCTCAACCACCAGC
GCCACCGCCATCTCCCACATGCGCTCTGTGTCAGGTACTGCGGGGAAATT
AAATAGCAACAGTGGCATGAAGGCCCGCATTGTGACCTTGGCTCCGGGGA
GCGGATGCGCGGGTCGAAGCAAGACCTCAGGCGGAGGTTATGGCGGCTTT
CAGGAGGGAGGTGCGGTGCCCGCCACCGCTACCACCACCACCTCGGTTGC
CAGTACTTCCTCCTCTAAGAAGAGCCAGACGCCTGAGTTTCTGGTCAAAC
TGCATCGGATCCTCCTGAACGAAGACAAGGATATTATCTACTGGGATAAT
GGACAAATCCATGTCCGCGACCCGACTGTGCTCGGGCAGAGCGTCCTGCA
CAAGTACTTCCGGCACAGCAAATACAGCTCCTTCCAGCGCCAGCTCAATT
ACTTTGGCTTCCGCAAAACCCAAGGGAAAGGCAAAATGAGTGCGTGCACG
TACACCAACGTCCAGCTCTCCGGTGGCAACATCAAGAGCCTGCTCAGCGT
GAAGCGCAAAAGCAGCACGGTCGTCGGAAAGGAGGGAGGCGAGGGAGAGG
AGGACTCGCCACTCGTGGGGGAGGAGGCCGAGGAGGTCACGGACTCGGAC
GACGAGGCGACAGATAGCCTGTCCCCCGGGAGTGTGGGGCTGAAGCGGGG
CGCCTCTCTCAGCTTCTCGTCGATCAGCACCTCTGGCGGCCACCAGCAGG
GACGGAAGCGCATGTGCTCTGTGACCTCTGGGGACTGTGTCTCGCTCCAG
GAGACCCTGGCGGCGGACGACTTCCCTGAGGACCGAGAGGACGGGAGCGA
GGCCAACACCTCGGCGGGCGCGCTGTCGGGGTACGCTTCTTCCATGTCGG
ATGGCCAGGACGGAGGAGACGAAAAGGAAGGCGACGGGGAGGCAGAGGGA
GCGGGAGGCATTTCCTTCGCCCCCACGGGCGGAAGCGCTTCGGACCCCCA
GCAGCGGCACGCTCTGGACCTCTCCCGGTCTCAAGGGCGGCCTCGCCTCA
GCCTGACCATTCCTGGTGGCGTCCGCCAGGGCCAGCTAGCGCCCCTCTCC
ACCGCCCCCGCCGGCCCCGCCACCGTCAAGTCACAGGACCCAAACGCACT
GCCCAATTTTTTCTCCTACAACGTGCTACCGGCACCCTCGCCGCGAGGGG
CTGATGACCTCTTCCCTTCCTGCCTGACTTCCTTCGACACGGTCGGCGAC
TCGGCGTCCTCCCCATGGGCCTGGGCGGAGCCCCCCGTCTCGGGAAGTTT
GTCCTCGCTGTCTCTCGAGACTGGCAGCGGCATGACCCCCCTCGGCACCC
TGGAGGAAGGCCACAGCAATCAGAGCGCCTTTAACTGCGATCAGGAGGTG
AAAGAAAGAGAAGGCCTAGAGAGAGAGGCTGCTCAGATGCCGTCCGCGGC
CGCCATCGCGGCCGCCGCGCTCTGCAGTCCTCGGGGGGAGAATGCCTTTC
TTCTTCAGATGGAAGGCGATTTCTGGGGCAACCGGGTCGCCTCCACCTCC
GTCCTTCACAAGTATCCACAAGCCGTGAGCAGATCATACACACTCATCCA
CCGCCATGAATTCCACCTAGTCATCCTAACCCCTCTGACGACGGACGACT
GCCCAGGGAGGCCCCGGGACACCGTACACGAGAAGATAATTGAGAAGTCG
AGGAACGTGAATGAGACGATCCAAAGTGAAGACATGCACAAGAATGCTCG
GCGTAGACGATCCACTCCACAAGACAGGCGCTCCCTTAGGGGAAGCGTCC
CAAACGCTGTCAACGAATTTCCTCTGAATGTTACTTGCGAGAAGCAGATA
TGGACGAATGTGAAAAAGTTCATCAAGGAGGTCGGAGAAGCACTGGCCTT
GTTTGAGAGGTCGCATGTTCGCGACATCCAAGCAGACCAAACTCGCTTTG
AAACTAGATGGGAAGGGCAAAGATACGCGTAG
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protein sequence of rna2928

>rna2928-protein ID=rna2928-protein|Name=rna2928|organism=Nannochloropsis gaditana|type=polypeptide|length=68bp
MVEQKMRFYENKICRQIITIRGNRTLTYSRMTCYTAGETQFWSNVLALNQ
RCWTEYFFGPVRPMLDSV
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mRNA from alignment at CM002460.1:291320..291526+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2928 ID=rna2928|Name=rna2928|organism=Nannochloropsis gaditana|type=mRNA|length=207bp|location=Sequence derived from alignment at CM002460.1:291320..291526+ (Nannochloropsis gaditana)
ATGGTGGAGCAGAAAATGCGATTTTATGAAAATAAAATTTGCCGGCAGAT
CATCACTATACGAGGCAATCGCACTCTTACGTACAGTCGAATGACGTGTT
ACACAGCAGGTGAAACGCAATTTTGGTCAAATGTATTGGCATTGAATCAA
CGATGTTGGACAGAGTACTTTTTTGGTCCTGTCCGGCCCATGTTGGATTC
AGTCTGA
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Coding sequence (CDS) from alignment at CM002460.1:291320..291526+

>rna2928 ID=rna2928|Name=rna2928|organism=Nannochloropsis gaditana|type=CDS|length=207bp|location=Sequence derived from alignment at CM002460.1:291320..291526+ (Nannochloropsis gaditana)
ATGGTGGAGCAGAAAATGCGATTTTATGAAAATAAAATTTGCCGGCAGAT
CATCACTATACGAGGCAATCGCACTCTTACGTACAGTCGAATGACGTGTT
ACACAGCAGGTGAAACGCAATTTTGGTCAAATGTATTGGCATTGAATCAA
CGATGTTGGACAGAGTACTTTTTTGGTCCTGTCCGGCCCATGTTGGATTC
AGTCTGA
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Synonyms
Publications