rna2924, rna2924 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2924
Unique Name	rna2924
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1640
Alignment location	CM002460.1:282583..284678 -

Link to JBrowse

Properties


Property Name	Value
Product	sorting nexin 1
Orig transcript id	gnl\|cribi\|Naga_100248g5.5001.mrna
Orig protein id	gnl\|cribi\|Naga_100248g5.5001
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:282583..284678 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100248g5	gene2805	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2924	rna2924-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27757.1	cds2916	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:282583..284678-
coding sequence from alignment at CM002460.1:282583..284678-

mRNA sequence

>rna2924 ID=rna2924|Name=rna2924|organism=Nannochloropsis gaditana|type=mRNA|length=1640bp
GCGTGGGAATGCCCAGTGCCGACACGCACCTGTGGAGGAATGCAAGACGG
TCGTTGAGTCAAGTATCCTGATGGTGTACATTGGACTCGATGGCGGCATA
TTTTTTGCCCCTGGTCGTTGTGCGTGTACATGTAAACTATCCACGACAGT
GCCCTGAAGAACTCTTCCGGTTTCGCTCGAGAGGAGGCGAGGAGCACACC
AAATGCACGCAATGCGTAGAACGCAGTAAACGGCGCTTTAAACCCTTCAA
TGCCACGCGAACGACAGATGAAGATGCTTCGTACTCTCGGGTGCAGATAT
TTCACGCGACTAGGGCGAGGACTCTCTATCACGGCGTGCACGGGGTGGGA
AGCACGGAGCCCGACAGCCTTTCTTGTGTCGGGCTCCTCCCTGCCCTGGC
GCAATATTTACATGAACACGAGGAGGATAAACGAGATATCCTGTCACGAA
AAAATACCGCAAGCAGCAAGATTACGAGTGGTACGCTCCAGGCATGTTGG
GTGTGCGCATGGAGGCTCAAGAAAGTCGACAGGTGGTGCCACAATAACGA
GATATATGGCTGGGATGCAGCCTCGCCGCGCTTTCTCAGGACAGGGCGGT
GGCCAGGACGGCAATAAAACTTTCTTGGGGGAGCCTTTGGAGGTGACTCC
CATGCCCTTCAATGCTGTGATGCTGGACACGGATAATATGCGGGTGACAG
ACACGAGCGACTTCACGACCCGCCTGTTGGTGACAGTCCAACAGCTCCGG
AGGGAAGGCCGAAGCAGCATGTGGGTCCGTGTACACGCTTTGAACGGACA
TCTTCTGGGCGTGCTGGGGACATTTGGCTTCAAATGCCATCACTGTGAGC
CAGAGTCGGTGATCATGAATTTGTGGTTGCAGCCGGGCAAGGAGAACAAG
GTCCCTCCCTACGCGACCCATTTGGTGGGAGTGGCGGGCTTCTGTCAGAA
TAAGAAAGGAGAGGTCCTGCTCGTCAAGGAGGGCAGCAAGAATCTGAGTG
GGTGGAAACTCCCGGGGGGCTACATTAATCCCGGCGAAGAATTTGGAGCC
GCGGCAGTGCGTGAAGTGGAGGAGGAGACTGGGGTCCGGTCCTCGTTCGA
AGGCCTGTTGGCCCTCCGGCACCAGCACCAGCAGTCTTTCGGCGTCGACG
ACATCTACGTGGTCACGCGCCTGCAAGCCCTCACAGACGAGCTCCGTTTG
TGCTCCTCAGAGATCCAGGATGCGCGCTGGGTGCCCCTGAAGCAGTTCCA
AGACGAAGCCTCCCACCCGATCCTCAGGACCGTGGCCGAGCTCACGCGGG
GGTGGGGCGAGGGGGAGGGGCCCGTCAGGGGGGTCATCGTGGAGCGGGAA
CACCCCTCGATTTTGCCGGGTCGCCCGCCCTACAAGCTATACCACGCGCC
GCTCCTGGGGCAGTAGGCGGTGGGAGGGAAAGCGGATGGAAAGGGTTGAG
GAATTTGTACAAAGCAGAGGAGAGGAAGGAAGATTTTCTTATCCGCAAAC
GAAAGGAAAAAATTGCAGCTCTGCCTTAGAGCCAAGCACTCAAAATATGA
AAAAGTCCCAACACTCTAGCCCGGCATCGCCCTGCTTGTCACTCCCTCAA
GGCATTCGTTTCAGCGTTGTCTACAGGCCTCCTCCTCCTC

protein sequence of rna2924

>rna2924-protein ID=rna2924-protein|Name=rna2924|organism=Nannochloropsis gaditana|type=polypeptide|length=440bp
MANSSPNPTAALNGLLVSVADPLKHNEGVQAWIGYTVVTQADDSRSEFQA
PRTSVLRRYSDFNWLHMKLSHSFPGCILPPLPEKAMVGRFEAPFVEARRR
ALERYLLRVVKHPELGKSSDLVLFLQENEAKLEHAKAEWRREQMRQPKVL
RLVKQAFAHMEHSLSSASTGKVEVPRSDSDAVLDDIATCVHVLEVHFHSA
AREASTWVRREKEAADGCFQLGLALTLLGQNEAGGLGEVIRGTGHALDAA
SVLATGAVESSGLLLEGPLVEWSRGLGSAKLALLRRMEARRAYHEALVEV
AVRAQGKEKWVGMIGKEDKLQAAEGAWGKAVAAAEAKRKEFETVSGRIVR
DWGAFREEKAEELRKAAVAFLEAQVGRHEKMRTAWAGALSKVKEVDPKQG
LNQEATTGGGEKGGASRDEGGAGRGAGAGGGKGEEEMIAE

mRNA from alignment at CM002460.1:282583..284678-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2924 ID=rna2924|Name=rna2924|organism=Nannochloropsis gaditana|type=mRNA|length=2096bp|location=Sequence derived from alignment at CM002460.1:282583..284678- (Nannochloropsis gaditana)
AGCTCTCTTTGACAATGGCAAGGTGGTATCCTCCCTCGACATCGACGACA
AGGCCCCAAGGACGCAGGCGCGTGAAGCTGACGAAAGCCGCCTGTCGTGG
TGATCGATCACCAGACTTCCCCTATCTCCCAGATCAGCGGTCCTCGACTC
ACGCAACCACTTTTCGTACAACTCTAGCTGACTGTGACCACCGACGACTC
AAGTCATAAGATGAGGAGTTGGCAGGGTATCTCTTCTATCAACATGTACT
CTCCTCTTTCTGGTGTGCGACATTGAGACCATCTTATCTTTCCCTATACT
CCGTCTACCGCTACAACATGACTAGGTTCTCCCCACCCGGTGCCCTTTCC
TCATTGCCCCAGAAAACTAGACCGTTGACGCCGTGACAATGGCCAACAGT
TCTCCTAATCCGACAGCAGCTTTGAGTAAGTTAATACAAGCGAGGTACAT
TTCTTCTCCGGCCCATGTAGGGTTTGCTCACTTGCTTTTCACTCGGGTAT
GGGGGGTTTCCCCTCACAACACGTATCTCCTATAAACGTAAATGTGAATC
CTGCTCTACTTAGCAATTAATGTTGAGCCTTTCTTGTCAAAACGTTTCAG
ACGGTCTCCTTGTCTCCGTCGCGGACCCTCTGAAGCACAACGAAGGTGTG
CAAGCCTGGATTGGCTATACCGTTGTCACTCAGGCTGACGACAGCCGTAG
CGAGTTCCAAGCCCCCCGCACAAGTGTCCTCCGCCGCTACTCTGACTTCA
ACTGGTTGCATATGAAGTTGAGCCACTCCTTTCCTGGATGTATCCTCCCC
CCTCTTCCTGAAAAGGCCATGGTCGGTCGCTTCGAAGCCCCCTTCGTGGA
AGCGCGCCGCCGCGCCCTGGAGCGCTACTTGTTGCGCGTGGTGAAGCACC
CTGAGTTGGGAAAAAGCAGTGACCTGGTCCTATTTTTGCAGGAAAATGAG
GCCAAACTCGAGCACGCCAAGGCGGAATGGCGGCGTGAGCAGATGAGGCA
ACCCAAGGTGCTGCGCTTGGTCAAGCAAGCCTTCGCCCACATGGAGCACT
CCCTCTCTAGTGCCTCCACCGGAAAGGTCGAGGTTCCCCGGAGCGATTCC
GACGCCGTCCTGGACGACATTGCGACCTGCGTGCACGTCTTGGAGGTGCA
CTTCCACAGCGCCGCGCGCGAGGCCTCTACCTGGGTCCGGAGGGAGAAGG
AGGCAGCCGACGGGTGCTTCCAGCTCGGCCTCGCGCTCACCCTGCTGGGC
CAGAACGAGGCTGGAGGGTTGGGGGAAGTAATTAGGGGCACGGGGCATGC
TTTGGACGCGGCGTCGGTGCTGGCAACCGGGGCTGTGGAAAGCTCTGGCT
TGCTCTTGGAGGGGCCACTGGTGGAGTGGAGCCGGGGGCTGGGCTCCGCC
AAACTCGCTTTGCTTCGACGCATGGAGGCTCGGAGAGCCTACCACGAGGC
CTTGGTGGAGGTGGCGGTACGCGCGCAGGGCAAAGAGAAGTGGGTAGGTA
TGATTGGAAAGGAGGACAAGCTGCAGGCGGCCGAGGGGGCGTGGGGAAAG
GCGGTGGCGGCGGCGGAGGCGAAGAGGAAGGAGTTTGAGACCGTGTCGGG
GAGGATTGTGCGGGATTGGGGGGCGTTTCGGGAGGAAAAGGCCGAGGAAC
TGCGAAAAGCGGCGGTGGCATTCCTGGAGGCGCAGGTGGGACGACACGAG
AAGATGCGGACGGCCTGGGCGGGGGCCCTCTCGAAAGTTAAGGAGGTGGA
TCCCAAGCAGGGCCTGAATCAGGAGGCCACGACAGGGGGAGGGGAGAAGG
GGGGGGCGAGCCGGGACGAGGGGGGAGCTGGTAGGGGGGCGGGGGCGGGC
GGAGGGAAGGGGGAAGAGGAGATGATAGCAGAGTGAATGGAGAGTCTGGG
CTGAAGGTTCCCGTTTCGGGCTTGTAAAGATAGCGAGAATGAAGCGCCAC
GCCAGTATAGAGGCAAATGCGATTGACTGGAAAGGAGCGTGTACAAGACA
TGGGAGGGAGGAGGAGGAGGCCTGTAGACAACGCTGAAACGAATGCCTTG
AGGGAGTGACAAGCAGGGCGATGCCGGGCTAGAGTGTTGGGACTTT

Coding sequence (CDS) from alignment at CM002460.1:282583..284678-

>rna2924 ID=rna2924|Name=rna2924|organism=Nannochloropsis gaditana|type=CDS|length=2646bp|location=Sequence derived from alignment at CM002460.1:282583..284678- (Nannochloropsis gaditana)
ACGGTCTCCTTGTCTCCGTCGCGGACCCTCTGAAGCACAACGAAGGTGTG
CAAGCCTGGATTGGCTATACCGTTGTCACTCAGGCTGACGACAGCCGTAG
CGAGTTCCAAGCCCCCCGCACAAGTGTCCTCCGCCGCTACTCTGACTTCA
ACTGGTTGCATATGAAGTTGAGCCACTCCTTTCCTGGATGTATCCTCCCC
CCTCTTCCTGAAAAGGCCATGGTCGGTCGCTTCGAAGCCCCCTTCGTGGA
AGCGCGCCGCCGCGCCCTGGAGCGCTACTTGTTGCGCGTGGTGAAGCACC
CTGAGTTGGGAAAAAGCAGTGACCTGGTCCTATTTTTGCAGGAAAATGAG
GCCAAACTCGAGCACGCCAAGGCGGAATGGCGGCGTGAGCAGATGAGGCA
ACCCAAGGTGCTGCGCTTGGTCAAGCAAGCCTTCGCCCACATGGAGCACT
CCCTCTCTAGTGCCTCCACCGGAAAGGTCGAGGTTCCCCGGAGCGATTCC
GACGCCGTCCTGGACGACATTGCGACCTGCGTGCACGTCTTGGAGGTGCA
CTTCCACAGCGCCGCGCGCGAGGCCTCTACCTGGGTCCGGAGGGAGAAGG
AGGCAGCCGACGGGTGCTTCCAGCTCGGCCTCGCGCTCACCCTGCTGGGC
CAGAACGAGGCTGGAGGGTTGGGGGAAGTAATTAGGGGCACGGGGCATGC
TTTGGACGCGGCGTCGGTGCTGGCAACCGGGGCTGTGGAAAGCTCTGGCT
TGCTCTTGGAGGGGCCACTGGTGGAGTGGAGCCGGGGGCTGGGCTCCGCC
AAACTCGCTTTGCTTCGACGCATGGAGGCTCGGAGAGCCTACCACGAGGC
CTTGGTGGAGGTGGCGGTACGCGCGCAGGGCAAAGAGAAGTGGGTAGGTA
TGATTGGAAAGGAGGACAAGCTGCAGGCGGCCGAGGGGGCGTGGGGAAAG
GCGGTGGCGGCGGCGGAGGCGAAGAGGAAGGAGTTTGAGACCGTGTCGGG
GAGGATTGTGCGGGATTGGGGGGCGTTTCGGGAGGAAAAGGCCGAGGAAC
TGCGAAAAGCGGCGGTGGCATTCCTGGAGGCGCAGGTGGGACGACACGAG
AAGATGCGGACGGCCTGGGCGGGGGCCCTCTCGAAAGTTAAGGAGGTGGA
TCCCAAGCAGGGCCTGAATCAGGAGGCCACGACAGGGGGAGGGGAGAAGG
GGGGGGCGAGCCGGGACGAGGGGGGAGCTGGTAGGGGGGCGGGGGCGGGC
GGAGGGAAGGGGGAAGAGGAGATGATAGCAGAGTGAATGGCCAACAGTTC
TCCTAATCCGACAGCAGCTTTGAACGGTCTCCTTGTCTCCGTCGCGGACC
CTCTGAAGCACAACGAAGGTGTGCAAGCCTGGATTGGCTATACCGTTGTC
ACTCAGGCTGACGACAGCCGTAGCGAGTTCCAAGCCCCCCGCACAAGTGT
CCTCCGCCGCTACTCTGACTTCAACTGGTTGCATATGAAGTTGAGCCACT
CCTTTCCTGGATGTATCCTCCCCCCTCTTCCTGAAAAGGCCATGGTCGGT
CGCTTCGAAGCCCCCTTCGTGGAAGCGCGCCGCCGCGCCCTGGAGCGCTA
CTTGTTGCGCGTGGTGAAGCACCCTGAGTTGGGAAAAAGCAGTGACCTGG
TCCTATTTTTGCAGGAAAATGAGGCCAAACTCGAGCACGCCAAGGCGGAA
TGGCGGCGTGAGCAGATGAGGCAACCCAAGGTGCTGCGCTTGGTCAAGCA
AGCCTTCGCCCACATGGAGCACTCCCTCTCTAGTGCCTCCACCGGAAAGG
TCGAGGTTCCCCGGAGCGATTCCGACGCCGTCCTGGACGACATTGCGACC
TGCGTGCACGTCTTGGAGGTGCACTTCCACAGCGCCGCGCGCGAGGCCTC
TACCTGGGTCCGGAGGGAGAAGGAGGCAGCCGACGGGTGCTTCCAGCTCG
GCCTCGCGCTCACCCTGCTGGGCCAGAACGAGGCTGGAGGGTTGGGGGAA
GTAATTAGGGGCACGGGGCATGCTTTGGACGCGGCGTCGGTGCTGGCAAC
CGGGGCTGTGGAAAGCTCTGGCTTGCTCTTGGAGGGGCCACTGGTGGAGT
GGAGCCGGGGGCTGGGCTCCGCCAAACTCGCTTTGCTTCGACGCATGGAG
GCTCGGAGAGCCTACCACGAGGCCTTGGTGGAGGTGGCGGTACGCGCGCA
GGGCAAAGAGAAGTGGGTAGGTATGATTGGAAAGGAGGACAAGCTGCAGG
CGGCCGAGGGGGCGTGGGGAAAGGCGGTGGCGGCGGCGGAGGCGAAGAGG
AAGGAGTTTGAGACCGTGTCGGGGAGGATTGTGCGGGATTGGGGGGCGTT
TCGGGAGGAAAAGGCCGAGGAACTGCGAAAAGCGGCGGTGGCATTCCTGG
AGGCGCAGGTGGGACGACACGAGAAGATGCGGACGGCCTGGGCGGGGGCC
CTCTCGAAAGTTAAGGAGGTGGATCCCAAGCAGGGCCTGAATCAGGAGGC
CACGACAGGGGGAGGGGAGAAGGGGGGGGCGAGCCGGGACGAGGGGGGAG
CTGGTAGGGGGGCGGGGGCGGGCGGAGGGAAGGGGGAAGAGGAGATGATA
GCAGAGTGAATGGCCAACAGTTCTCCTAATCCGACAGCAGCTTTGA

Synonyms

Publications