rna2923, rna2923 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2923
Unique Name	rna2923
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2702
Alignment location	CM002460.1:280887..282671 +

Link to JBrowse

Properties


Property Name	Value
Product	Nudix hydrolase 6-like protein
Orig transcript id	gnl\|cribi\|Naga_100248g4.4998.mrna
Orig protein id	gnl\|cribi\|Naga_100248g4.4998
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:280887..282671 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100248g4	gene2804	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2923	rna2923-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27754.1	cds2915	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:280887..282671+
coding sequence from alignment at CM002460.1:280887..282671+

mRNA sequence

>rna2923 ID=rna2923|Name=rna2923|organism=Nannochloropsis gaditana|type=mRNA|length=2702bp
ATCTGTCGTTCGCGTGGCATTGAAGGGTTTAAAGCGCCGTTTACTGCGTT
CTACGCATTGCGTGCATTTGGTGTGCTCCTCGCCTCCTCTCGAGCGAAAC
CGGAAGAGTTCTTCAGGGCACTGTCGTGGATAGTTTACATGTACACGCAC
AACGACCAGGGGCAAAAAATATGCCGCCATCGAGTCCAATGTACACCATC
AGGATACTTGACTCAACGACCGTCTTGCATTCCTCCACAGGTGCGTGTCG
GCACTGGGCATTCCCACGCAGGAGGAACAGAGCGCCCAGTTTCTCGTCGA
CCTCACCTCTTCCTCCTATGGCCGAGTCCTGCTCGCCCTCCTCCTCCTCC
ATTACTACTGCCCCGACTGGTAGCACCCTTCCAGGGGAAGGAGGAGGCAT
GCCGGCGGAGCGGAAAGGGCGTTTCCGCGTAAAACAGGTGGAAGCGGGCG
AGGTCGAGGAGGCGTCCTACCCTGAGGGAGACATCGTGGGGGGAAGAATC
AAAGCCTCAGAACGTTCCCATGTACATACACATGATACTTCCCCGTCCAG
TAGTCCTCATCCATATACATCGCACCGGATGGGGACAGTGGATATGAGTA
CGGTCTCTGACCTGACGGATTCCCTGAGCAAATCGGGCAAGACGGGAGGG
GAGAAAAAAGGCCGGTTCACTATCCGTGAACTGCCTGACTTGGGCATGGA
GGGCTCAGGGCCCTCCGCGCATCATCCGCCCGGCACACCCAGCCCTCACG
TGCACATGGACCCGCACCCGCACGTTCATCAGTCCCACGGCCACCATCAG
CAAGGCCATCGCGCCGAGCATCCGCCCTCCCATCAAGGCGGCCTGGGAGG
GGCATCGAGCCATGGGCTTCCCCACTCACGGCCCCCGCCCCATCCTCACG
GGCACCACCACATGCACGGCCACTCGCTCCCACGGGCGTCCTCGGCCCAG
CAGCTCGAGGCGCCTTACGCGGTGGGGGGCTCGGGAGGAACGAACCTGCG
GCCAGCGACTTCGATGCAGCACATGGAGGGAATCGGGCATGGATCCCAGT
CCGAGATCGCAAACTATCGGGCGCAAGGGGAGGGTCAATCTGGAAGCGGG
CGCCCGTACGCCCCCGGCTTGCCCCCCGCCTACTCGCAGGAGGCGGGTTC
CCCCCAAGATCAGGCGGGATGGCGACTCCTGCGCCAGCAGAACGACCTCA
TCCTGCACCGACTCTCGCAGATGGAGCGTTTTTTCCATTCATCGCCGCAT
CTCCCAGGAGCCTCGGGGGGCGTCGCAGCCGGAGGACCGGACCGGGCGGG
TTTCGGGCCGGCGTCCACGCCAGGGCCCCCGAAGAGCAGTCCTGTCCACC
ACCACGAAATGCCTCCCTCGTCCATGTCCTCCTCCGGTCCGGGGAAGGAC
ATTGGGGCGGGGAAGCTGACTTATCTTCTGGAGCAGATGAAGGTGGAGGT
GGAGGCGGCCGTGAGTCGGCGGAAGGAGGTGGATTTGCAGATGAAGAGGT
TGCAGGAGAAGAACCGAGCGCTCGAGGAGAAGGTAGAGGAGGAGCGGCGG
AAGCGCGTGGAGACTGAGAAAAAGTATGAGAAAGTGAAGGAACGCTGTGA
GAGCATGATGCAGGAGCTAGACCACCGCCGGGGGGCGGAGGCGGGGGGGC
GGGCCCGGGCGTACCGAGTCAGCTCGCGACGGGGAACGTGGCGGAGAAGG
AGGGCCCCCCGCCTCCGCCCCCACCACCAGCACAGCCGCAACACCAGCAC
GTGCAGCGGCAGCAGCAGGCTGCCATGTCGCACCAATCCCCGCTCAGCGC
CGGGGCCAGCCCCTCCACGACCCCCCCCAACCCGCACGTGTTCGCGCATG
ACTTCCTACCGCAACCTCCGCCTCCCCCCTTCAGCGCGCCCATCCCCATC
GCCAGCAAGCCCGGGGGAATCGCAGGCCTCTCGGACAGTCTGCACGACGG
CTTCGCCTCCGCCTTGAAATTCCCGGCGGCCGTGCCTCCCCGGATGACCC
TCTCGCCAGGGCCTACGCCTGGGATCGGCACGTCGTCTGCTGTGAGCACT
CCGGGCGGAAGCAGCGGCAGCTGCGGGAGCAACAATGGTGGAATGGGCCA
AGGAGGGAGCTTGGGCGTGCTCGATCCCTTCAACGGTCTTCTGAATTCAA
GCGGGGGGATGGTGGCGGGGACAGGATCGAGTTTGGGGTGGGGAGGACCC
CGCGGGCGGGGCGCCAGCGACGTCATTTATGGCAGCAACAGTCACAGTGG
TTCCAGTCACAGTGGCAAACCGGCACAAGGCGGGCAGAACGCTCATGGGA
GGCGGGAAACAAGCTTGGTGTGAGTCTGGCCTGGCTGCCCTGGGAGCTCA
CGGGGGCTGGGCCCGTCCTGCAGGGGCCAAGTAAGCCACGATGAGAGTGG
GTCCAGGGATGTGTCATTGACTATGAGATGAGCAGTCACACAATGGATGC
TCATGTGTCGCTCACAATGGCCACAGGCCGCGTGGCTGCTCTCGGCTCAA
TTAGTCGGCTCAATTACAGTGTACATGAGAAAAATGATGGGCTTGTAGGA
CCTCAATAATTATAGTTGCTTGCGTGTCATTGCCTTTTTGTGCATGATTA
ACGACCCTCTCAATGTGGTGTGCTATGTTCACAAGTACATACACAATCAG
TCAGCCATTCACTTCTCAGTCCCAGCTAGAACCCTCCATCCCGCTTCTCC
CC

protein sequence of rna2923

>rna2923-protein ID=rna2923-protein|Name=rna2923|organism=Nannochloropsis gaditana|type=polypeptide|length=388bp
MPRERQMKMLRTLGCRYFTRLGRGLSITACTGWEARSPTAFLVSGSSLPW
RNIYMNTRRINEISCHEKIPQAARLRVVRSRHVGCAHGGSRKSTGGATIT
RYMAGMQPRRAFSGQGGGQDGNKTFLGEPLEVTPMPFNAVMLDTDNMRVT
DTSDFTTRLLVTVQQLRREGRSSMWVRVHALNGHLLGVLGTFGFKCHHCE
PESVIMNLWLQPGKENKVPPYATHLVGVAGFCQNKKGEVLLVKEGSKNLS
GWKLPGGYINPGEEFGAAAVREVEEETGVRSSFEGLLALRHQHQQSFGVD
DIYVVTRLQALTDELRLCSSEIQDARWVPLKQFQDEASHPILRTVAELTR
GWGEGEGPVRGVIVEREHPSILPGRPPYKLYHAPLLGQ

mRNA from alignment at CM002460.1:280887..282671+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2923 ID=rna2923|Name=rna2923|organism=Nannochloropsis gaditana|type=mRNA|length=1785bp|location=Sequence derived from alignment at CM002460.1:280887..282671+ (Nannochloropsis gaditana)
GCGTGGGAATGCCCAGTGCCGACACGCACCTGTGGAGGAATGCAAGACGG
TCGTTGAGTCAAGTATCCTGATGGTGTACATTGGACTCGATGGCGGCATA
TTTTTTGCCCCTGGTCGTTGTGCGTGTACATGTAAACTATCCACGACAGT
GCCCTGAAGAACTCTTCCGGTTTCGCtcgagaggaggcgaggagcacACC
AAATGCACGCAATGCGTAGAACGCAGTAAACGGCGCTTTAAACCCTTCAA
TGCCACGCGAACGACAGATGAAGATGCTTCGTACTCTCGGGTGCAGATAT
TTCACGCGACTAGGGCGAGGACTCTCTATCACGGCGTGCACGGGGTGGGA
AGCACGGAGCCCGACAGCCTTTCTTGTGTCGggctcctccctgccctggC
GCAATATTTACATGAACACGAGGAGGATAAACGAGATATCCTGTCACGAA
AAAATACCGCAAGCAGCAAGATTACGAGTGGTACGCTCCAGGCATGTTGG
GTGTGCGCATGGAGGCTCAAGAAAGTCGACAGGTGGTGCCACAATAACGA
GATATATGGCTGGGATGCAGCCTCGCCGCGCTTTCTCAGGACAGGGCGGT
GGCCAGGACGGCAATAAAACTTTCTTGGGGGAGCCTTTGGAGGTGACTCC
CATGCCCTTCAATGCTGTGATGCTGGACACGGATAATATGCGGGTGACAG
ACACGAGCGACTTCACGACCCGCCTGTTGGTGACAGTCCAACAGCtccgg
agggaaggccgaAGCAGCATGTGGGTCCGTGTACACGCTTTGAACGGACA
TCTTCTGGGCGTGCTGGGGACATTTGGCTTCAAATGCCATCACTGTGAGC
CAGAGTCGGTGATCATGAATTTGTGGTTGCAGCCGGGCAAGGAGAACAAG
GTCCCTCCCTACGCGACCCATTtggtgggagtggcgggcTTCTGTCAGAA
TAAGAAAGGAGAGGTCCTGCtcgtcaaggagggcagcaagaATCTGAGTG
GGTGGAAACTCCCGGGGGGCTACATTAATGTAAGCGATGGGTGCTGGGAA
GGGATGTCTTGACTCAGCCCTCCTCTCAACCCCAACAGCGAGTGGTGCCG
TTCCGTGCGTATGATgcgtcttccttccaccccgaCTCACACCCACGTCT
ATCCCACCGCACTTCGTGACCTAGCCCGGCGAAGAATTTGGAGCCGCGGC
AGTGCgtgaagtggaggaggagactgggGTCCGGTCCTCGTTCGAAGGCC
TGTTGGCCCTCCggcaccagcaccagcagtCTTTCGGCGTCGACGACATC
TACGTGGTCACGCGCCTGCAAGCCCTCACAGACGAGCTCCGTTTGTGCTC
CTCAGAGATCCAGGATGCGCGCTGGGTGCCCCTGAAGCAGTTCCAAGACG
AAGCCTCCCACCCGATCCTCAGGACCGTGGCCGAGCTCACGCGGGGgtgg
ggcgagggggaggggcccgtCAGGGGGGTCATCGTGGAGCGGGAACACCC
CTCGATTTTGCCGGGTCGCCCGCCCTACAAGCTATACCACGCGCCGCTCC
TGGGGCAGtaggcggtgggagggaaagcggatgGAAAGGGTTGAGGAATT
TGTACAaagcagaggagaggaaggaagatttTCTTATCCGCaaacgaaag
gaaaaaattgcAGCTCTGCCTTAGAGCCAAGCACTCAAAATATGAAAAAG
TCCCAACACTCTAGCCCGGCATCGCCCTGCTTGTCACTCCCTCAAGGCAT
TCGTTTCAGCGTTGTCtacaggcctcctcctcctc

Coding sequence (CDS) from alignment at CM002460.1:280887..282671+

>rna2923 ID=rna2923|Name=rna2923|organism=Nannochloropsis gaditana|type=CDS|length=2334bp|location=Sequence derived from alignment at CM002460.1:280887..282671+ (Nannochloropsis gaditana)
ATGCCACGCGAACGACAGATGAAGATGCTTCGTACTCTCGGGTGCAGATA
TTTCACGCGACTAGGGCGAGGACTCTCTATCACGGCGTGCACGGGGTGGG
AAGCACGGAGCCCGACAGCCTTTCTTGTGTCGggctcctccctgccctgg
CGCAATATTTACATGAACACGAGGAGGATAAACGAGATATCCTGTCACGA
AAAAATACCGCAAGCAGCAAGATTACGAGTGGTACGCTCCAGGCATGTTG
GGTGTGCGCATGGAGGCTCAAGAAAGTCGACAGGTGGTGCCACAATAACG
AGATATATGGCTGGGATGCAGCCTCGCCGCGCTTTCTCAGGACAGGGCGG
TGGCCAGGACGGCAATAAAACTTTCTTGGGGGAGCCTTTGGAGGTGACTC
CCATGCCCTTCAATGCTGTGATGCTGGACACGGATAATATGCGGGTGACA
GACACGAGCGACTTCACGACCCGCCTGTTGGTGACAGTCCAACAGCtccg
gagggaaggccgaAGCAGCATGTGGGTCCGTGTACACGCTTTGAACGGAC
ATCTTCTGGGCGTGCTGGGGACATTTGGCTTCAAATGCCATCACTGTGAG
CCAGAGTCGGTGATCATGAATTTGTGGTTGCAGCCGGGCAAGGAGAACAA
GGTCCCTCCCTACGCGACCCATTtggtgggagtggcgggcTTCTGTCAGA
ATAAGAAAGGAGAGGTCCTGCtcgtcaaggagggcagcaagaATCTGAGT
GGGTGGAAACTCCCGGGGGGCTACATTAATCCCGGCGAAGAATTTGGAGC
CGCGGCAGTGCgtgaagtggaggaggagactgggGTCCGGTCCTCGTTCG
AAGGCCTGTTGGCCCTCCggcaccagcaccagcagtCTTTCGGCGTCGAC
GACATCTACGTGGTCACGCGCCTGCAAGCCCTCACAGACGAGCTCCGTTT
GTGCTCCTCAGAGATCCAGGATGCGCGCTGGGTGCCCCTGAAGCAGTTCC
AAGACGAAGCCTCCCACCCGATCCTCAGGACCGTGGCCGAGCTCACGCGG
GGgtggggcgagggggaggggcccgtCAGGGGGGTCATCGTGGAGCGGGA
ACACCCCTCGATTTTGCCGGGTCGCCCGCCCTACAAGCTATACCACGCGC
CGCTCCTGGGGCAGtagATGCCACGCGAACGACAGATGAAGATGCTTCGT
ACTCTCGGGTGCAGATATTTCACGCGACTAGGGCGAGGACTCTCTATCAC
GGCGTGCACGGGGTGGGAAGCACGGAGCCCGACAGCCTTTCTTGTGTCGg
gctcctccctgccctggCGCAATATTTACATGAACACGAGGAGGATAAAC
GAGATATCCTGTCACGAAAAAATACCGCAAGCAGCAAGATTACGAGTGGT
ACGCTCCAGGCATGTTGGGTGTGCGCATGGAGGCTCAAGAAAGTCGACAG
GTGGTGCCACAATAACGAGATATATGGCTGGGATGCAGCCTCGCCGCGCT
TTCTCAGGACAGGGCGGTGGCCAGGACGGCAATAAAACTTTCTTGGGGGA
GCCTTTGGAGGTGACTCCCATGCCCTTCAATGCTGTGATGCTGGACACGG
ATAATATGCGGGTGACAGACACGAGCGACTTCACGACCCGCCTGTTGGTG
ACAGTCCAACAGCtccggagggaaggccgaAGCAGCATGTGGGTCCGTGT
ACACGCTTTGAACGGACATCTTCTGGGCGTGCTGGGGACATTTGGCTTCA
AATGCCATCACTGTGAGCCAGAGTCGGTGATCATGAATTTGTGGTTGCAG
CCGGGCAAGGAGAACAAGGTCCCTCCCTACGCGACCCATTtggtgggagt
ggcgggcTTCTGTCAGAATAAGAAAGGAGAGGTCCTGCtcgtcaaggagg
gcagcaagaATCTGAGTGGGTGGAAACTCCCGGGGGGCTACATTAATCCC
GGCGAAGAATTTGGAGCCGCGGCAGTGCgtgaagtggaggaggagactgg
gGTCCGGTCCTCGTTCGAAGGCCTGTTGGCCCTCCggcaccagcaccagc
agtCTTTCGGCGTCGACGACATCTACGTGGTCACGCGCCTGCAAGCCCTC
ACAGACGAGCTCCGTTTGTGCTCCTCAGAGATCCAGGATGCGCGCTGGGT
GCCCCTGAAGCAGTTCCAAGACGAAGCCTCCCACCCGATCCTCAGGACCG
TGGCCGAGCTCACGCGGGGgtggggcgagggggaggggcccgtCAGGGGG
GTCATCGTGGAGCGGGAACACCCCTCGATTTTGCCGGGTCGCCCGCCCTA
CAAGCTATACCACGCGCCGCTCCTGGGGCAGtag

Synonyms

Publications