rna2903, rna2903 (mRNA) Nannochloropsis gaditana

Overview
Namerna2903
Unique Namerna2903
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2001
Alignment locationCM002460.1:223806..225383 +

Link to JBrowse

Properties
Property NameValue
Productdiaminopimelate decarboxylase
Orig transcript idgnl|cribi|Naga_100187g10.5306.mrna
Orig protein idgnl|cribi|Naga_100187g10.5306
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:223806..225383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100187g10gene2782Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2903rna2903-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27772.1cds2895Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2903 ID=rna2903|Name=rna2903|organism=Nannochloropsis gaditana|type=mRNA|length=2001bp
ATGTCCAGCGAGGATCGGGCCCGGTACCTGAACCATTTCGGGCCGTGCGA
CGTGAACGGCGACGGCTTCGTGGACGGGCCCCAGGCGGTGGAGCTTTTTT
CCCGGTCGGGCTTGGACCGAAGCGTCTTGGGCAGAGTCTGGGACCTGGCG
GACGCGGACAAGGACAGTCGGCTGAGCCCCGGGGAGTTCGCGGTGGCCAT
GCACCTGATCGTCTGTATCAGCAAGCGGGGCCTCCCTGTCCCCGAGCGCC
TCCCCCCCTCCTTGACCTCCTCCCTTTCCCCTCCCCCCGCTCCTTCCGCC
CCGGCCCCCAACGCCGCTGCTGTACCTTCCCCTTCCCCCCCCGCCCCCGC
TCGCACCCATTCCCTTCCTCAACATGCAACTGCGAGCACCCCAGAGGCCA
CGCCCTCCCTGACCGCCTCCCCCGCCACCGCCCCCCTCATGGGCCAATCC
CTTCCCGCCTCGTCCTTGGCCGGTTTGGGCTCCACCCTCTCCGAATCGAC
CCGCCCACCCTCCACTTCCCTCTCGGCCACGGGCACCCTACCCCCCTCGG
GTAACGGCGAGGAGGGCCTGGGCGGGGCCGTGGCGGGCGTGCAGGCATTG
GCGCAAAAGTTGAAAGCGGAGCACATCGCGCTCAAGGCCTCCGTGGATAC
GAACCAAGCAGACGCAGCGCGGGCGCAGGAGACGCTCGCCAAGACCTTGG
AGGAAGTGACGGGCCTCCAGGGAGAGCTCTCGAGGCTGCGTCAGCTGGCT
GCGACAGCTGACGAGGAACAACGGCAAATCTTCCAGTCCTTGGGGGCGGC
CCGCAAACATCGGGAATTGTTGTTGGGGGAGGTGGAAAAAGCCCGAGCCG
AGGTGGACCGGTTGCAGGCACAGAAATCCTCCCTGGTGGAGGAGATGGCG
AGCCTAAAGGTGGAAGCGAGCAGTGTCCAAGCCAGTAGGGAGGGGATCGC
GGCGTTGGCTGAAGAGCACCAGGGCGAGGCCGAAGCCGCCCAAGCAGAGA
CGACGTTGCTCCATTCGCTACTCTCTGCCATGGTGGGGACAAGTGCCCGG
GTGGGGAGGGAGGTGGAGGGTCTGAAGGGAGAGGTGGAGGGTGCTCGGGC
CTCCCTGAGGGCAGCGCACGCCCGGGCAGAGGCCCAGAAAGACTCCTTGC
TGCGGGCGCGACAGGAGCGGGAGGCGGCCACGGCGGAGCGGCATGCCGCC
ATCGTCCGGCTGGCATCGGGGGAGTCGGGCAAGCCCTCGAGGCCCGTGCC
ATTGCCTTCCTCCGAACCTGTCCCGTCGTCCACCGCCTCCTCCCTCCCTC
CCTCCCCTCCCCCTCCTCCCCCTCCTCCTCATGCCAACCTCTCTCCCTCC
CTCCAAGGTCCCGCTGCTTTGCCCCCGAAGGTCGCCTCCTCCTCCTCTCT
TGGCTCCTCCGTCTCCTCGCACCCGTCCCAGACCCATTCCCCCTCCGGTC
CCGCCAACTCCACCTTCGGCAGCTCTTCGGCCTTGCCTGTTAAGGAAACT
GCAACCACATCCCCCGCTTCCGCGCCTTCTACCGCAGCCACCGCGGGAAC
AGATGACCATGTCAAAGCCTTGAGCGACGGTTTCGACGACAATTTCGGGG
CGCACGTGACCGCGGCAAGCTTCGAGGCAGACGGGAACTCGAAGCATCCC
AACCAAGGAGGCTTTGGAGGCGGGAGAGACGACGATTTTGATTTCCCCGC
GCCCGAGGCCGGTGGGATGGCGGGCATCGGCGGCATCTCCGACACCTTCC
CTGCTCCAGAAACGATGCAGGCCCAGGCTGCGGGCACCACGCGGGCTGAG
ACAACGTCCTCCACGGGCGGGAAAGGGAGTGTGATGAGCAGCGATGCCTT
CGCCTCGGACCCTTTCGCCTTCCCTGACGACGATGCTTTCGGTTCCTCCC
TCCCTTCTTCCTCCCTGCCCCCCCCGGCAGCCGCTCCTGCAGAGGGGAAG
AAGGATGATGTGAACGACGCCTTCAGTTCGAATGCTTTCGACAAGTTTTA
A
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protein sequence of rna2903

>rna2903-protein ID=rna2903-protein|Name=rna2903|organism=Nannochloropsis gaditana|type=polypeptide|length=525bp
MAAAYKSSKVGAVLRTLQKQGVLQPSEARKGEDVILAYDLDALEAGFRSL
TEAFPAHFLHCYAMKAAPMGFIVEKAIQAGLGIEAASILEVENALLHGCQ
PANIVFDSPAKTFRELDYALSLGIHINANTFEEIDRIASILSEPTPSHAP
PRYPPSVGLRINPLVGEGTIAALSVATATSKFGVPLSSCSYDPSTPIENI
PSSSSKDRILGAFRKYPWLTGLHVHVGSQGISMGQLAHGVRVLSLLAIDV
DKAMGMEDGGGPGESGGRVRTMDLGGGLGVDYASPRNSPNFTELAATLKR
AAPSLFLPPPAQEGGKGSVEPQSGCSAGHPRIRVVTEFGRGLTVRTAWLA
SRVEYVFANADGGLEGAETLRTAILHAGADILLRECYLPGRFPHRFSLYS
EAGQGVAVEGEEEGEEEGEEEGMVEARLTRRPGRFNLAGPLCFAGDVIAK
GVRLPLLTSGDWVVVHDVGGYTLALFSRYCSRSAPAVVGYWKGGEEGGER
GEEIQVRVLQARETEKSVLGFWGGR
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mRNA from alignment at CM002460.1:223806..225383+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2903 ID=rna2903|Name=rna2903|organism=Nannochloropsis gaditana|type=mRNA|length=1578bp|location=Sequence derived from alignment at CM002460.1:223806..225383+ (Nannochloropsis gaditana)
ATGGCTGCTGCCTATAAGTCCTCGAAGGTAGGTGCTGTCTTACGTACTTT
GCAAAAGCAAGGTGTTCTTCAACCCTCTGAGGCTCGCAAAGGGGAAGATG
TCATCCTGGCCTACGACCTTGACGCCTTGGAAGCAGGTTTTCGGAGCCTC
ACGGAGGCTTTCCCGGCTCATTTTCTCCATTGCTACGCGATGAAAGCCGC
CCCCATGGGATTCATTGTTGAAAAAGCCATCCAGGCAGGGCTTGGTATCG
AAGCGGCTTCCAttttggaggtggaaaatgCCCTTTTGCACGGGTGCCAG
CCCGCCAACATTGTCTTTGATTCCCCTGCCAAGACCTTTCGGGAACTTGA
CTATGCCCTTTCCCTGGGAATCCATATCAACGCCAACACTTTCGAAGAAA
TCGACCGCATTGCGTCCATCCTCTCTGAGCCTACACCTTCGCACGCACCG
CCACGCTATCCCCCTTCTGTGGGCCTCCGCATCAACCCCCTTGTCGGGGA
GGGGACTATAGCCGCCCTTAGCGTCGCTACAGCGACCTCCAAATTCGGCG
TTCCCCTTTCATCCTGCTCCTACGACCCTTCCACGCCTATTGAAaacatc
ccttcctcctcctccaaagacCGCATCCTCGGCGCCTTTCGGAAATACCC
GTGGTTGACGGGCCTCCATGTGCACGTCGGCTCCCAAGGGATCAGCATGG
GGCAACTCGCCCACGGCGTCCGGGTCCTCAGCCTCCTGGCTATTGACGTG
GACAAGGCGatgggcatggaggacggTGGTGGGCCGGGAGAATCGGGCGG
CAGGGTGAGGACAATGGATTTAGGGGGCGGCCTCGGCGTGGATTACGCGT
CACCCCGGAATTCGCCGAATTTCACCGAGCTCGCGGCGACATTGAAACGG
GCAGCcccgtcccttttccttccaccgcctgcccaggaagggggaaaagg
aagcgtGGAGCCCCAAAGCGGGTGCTCTGCAGGTCACCCTCGGATCCGAG
TGGTGACCGAGTTCGGCAGGGGCTTAACGGTGCGCACCGCCTGGCTGGCC
AGCCGGGTCGAGTATGTCTTTGCCAACGCCGACGGGGGCCtagagggagc
ggagaccCTGCGCACGGCGATTTTGCACGCGGGCGCAGACATCCTCCTCA
GGGAGTGCTACTTGCCGGGGCGATTCCCGCATCGGTTCTCCCTCTATtcc
gaggcggggcagggtgtggcggtggaaggggaggaggaaggggaggagga
aggggaggaggaaggaatggtcGAGGCCAGACTCACACGGCGCCCGGGTC
GTTTCAATCTGGCGGGCCCCTTGTGCTTCGCCGGCGACGTGATCGCCAAG
GGAGTTCGGCTCCCGCTTCTAACGTCCGGAGATTGGGTCGTAGTACACGA
CGTGGGCGGATACACACTGGCCCTTTTCAGTCGGTATTGCTCACGGAGCG
CCCCCGCTGTGGTGGGGtattggaaggggggggaggagggaggggagaga
ggggaggagatccAGGTACGGGTCTTGCAGGCGCGGGAAACGGAGAAGAG
CGTCTTGggcttttggggggggcggtag
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Coding sequence (CDS) from alignment at CM002460.1:223806..225383+

>rna2903 ID=rna2903|Name=rna2903|organism=Nannochloropsis gaditana|type=CDS|length=1578bp|location=Sequence derived from alignment at CM002460.1:223806..225383+ (Nannochloropsis gaditana)
ATGGCTGCTGCCTATAAGTCCTCGAAGGTAGGTGCTGTCTTACGTACTTT
GCAAAAGCAAGGTGTTCTTCAACCCTCTGAGGCTCGCAAAGGGGAAGATG
TCATCCTGGCCTACGACCTTGACGCCTTGGAAGCAGGTTTTCGGAGCCTC
ACGGAGGCTTTCCCGGCTCATTTTCTCCATTGCTACGCGATGAAAGCCGC
CCCCATGGGATTCATTGTTGAAAAAGCCATCCAGGCAGGGCTTGGTATCG
AAGCGGCTTCCAttttggaggtggaaaatgCCCTTTTGCACGGGTGCCAG
CCCGCCAACATTGTCTTTGATTCCCCTGCCAAGACCTTTCGGGAACTTGA
CTATGCCCTTTCCCTGGGAATCCATATCAACGCCAACACTTTCGAAGAAA
TCGACCGCATTGCGTCCATCCTCTCTGAGCCTACACCTTCGCACGCACCG
CCACGCTATCCCCCTTCTGTGGGCCTCCGCATCAACCCCCTTGTCGGGGA
GGGGACTATAGCCGCCCTTAGCGTCGCTACAGCGACCTCCAAATTCGGCG
TTCCCCTTTCATCCTGCTCCTACGACCCTTCCACGCCTATTGAAaacatc
ccttcctcctcctccaaagacCGCATCCTCGGCGCCTTTCGGAAATACCC
GTGGTTGACGGGCCTCCATGTGCACGTCGGCTCCCAAGGGATCAGCATGG
GGCAACTCGCCCACGGCGTCCGGGTCCTCAGCCTCCTGGCTATTGACGTG
GACAAGGCGatgggcatggaggacggTGGTGGGCCGGGAGAATCGGGCGG
CAGGGTGAGGACAATGGATTTAGGGGGCGGCCTCGGCGTGGATTACGCGT
CACCCCGGAATTCGCCGAATTTCACCGAGCTCGCGGCGACATTGAAACGG
GCAGCcccgtcccttttccttccaccgcctgcccaggaagggggaaaagg
aagcgtGGAGCCCCAAAGCGGGTGCTCTGCAGGTCACCCTCGGATCCGAG
TGGTGACCGAGTTCGGCAGGGGCTTAACGGTGCGCACCGCCTGGCTGGCC
AGCCGGGTCGAGTATGTCTTTGCCAACGCCGACGGGGGCCtagagggagc
ggagaccCTGCGCACGGCGATTTTGCACGCGGGCGCAGACATCCTCCTCA
GGGAGTGCTACTTGCCGGGGCGATTCCCGCATCGGTTCTCCCTCTATtcc
gaggcggggcagggtgtggcggtggaaggggaggaggaaggggaggagga
aggggaggaggaaggaatggtcGAGGCCAGACTCACACGGCGCCCGGGTC
GTTTCAATCTGGCGGGCCCCTTGTGCTTCGCCGGCGACGTGATCGCCAAG
GGAGTTCGGCTCCCGCTTCTAACGTCCGGAGATTGGGTCGTAGTACACGA
CGTGGGCGGATACACACTGGCCCTTTTCAGTCGGTATTGCTCACGGAGCG
CCCCCGCTGTGGTGGGGtattggaaggggggggaggagggaggggagaga
ggggaggagatccAGGTACGGGTCTTGCAGGCGCGGGAAACGGAGAAGAG
CGTCTTGggcttttggggggggcggtag
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Synonyms
Publications