rna2902, rna2902 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2902
Unique Name	rna2902
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	357
Alignment location	CM002460.1:220832..222832 +

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Properties


Property Name	Value
Product	uba ts-n domain containing protein
Orig transcript id	gnl\|cribi\|Naga_100187g11.5305.mrna
Orig protein id	gnl\|cribi\|Naga_100187g11.5305
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:220832..222832 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100187g11	gene2781	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2902	rna2902-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27771.1	cds2894	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:220832..222832+
coding sequence from alignment at CM002460.1:220832..222832+

mRNA sequence

>rna2902 ID=rna2902|Name=rna2902|organism=Nannochloropsis gaditana|type=mRNA|length=357bp
ATGACCATTTCTCCCGTGGCCTCTGAACAGCCATGTCTCTTCGCCGTGAT
GCATATTACCCAAGCTTCAACTGCAACAAGCCCATGGCCCATCCCCGATG
AACGCCGTTCTCTCCCGGCGAATTTTCAACTCGCTTTGAGTAGAGTCAAG
GGCTATGCCAATTTCCTTGTCTTATTCGCTGCTTATTGCTGGGCTTTCCT
CGCGCCTTTGGAGGGCCACGCACGGTGGCAGATCAAGATCATCATCGTTT
TATTTACTTTTCCTCTCCTGGGCCCCTCCTACCGAATCGCTTTCCACGCT
GCATCCGCTTTCGGTCTGAGTGTCCGAGTTCCCCAGCAGGCCTGGCTATG
GAAGTGA

protein sequence of rna2902

>rna2902-protein ID=rna2902-protein|Name=rna2902|organism=Nannochloropsis gaditana|type=polypeptide|length=666bp
MSSEDRARYLNHFGPCDVNGDGFVDGPQAVELFSRSGLDRSVLGRVWDLA
DADKDSRLSPGEFAVAMHLIVCISKRGLPVPERLPPSLTSSLSPPPAPSA
PAPNAAAVPSPSPPAPARTHSLPQHATASTPEATPSLTASPATAPLMGQS
LPASSLAGLGSTLSESTRPPSTSLSATGTLPPSGNGEEGLGGAVAGVQAL
AQKLKAEHIALKASVDTNQADAARAQETLAKTLEEVTGLQGELSRLRQLA
ATADEEQRQIFQSLGAARKHRELLLGEVEKARAEVDRLQAQKSSLVEEMA
SLKVEASSVQASREGIAALAEEHQGEAEAAQAETTLLHSLLSAMVGTSAR
VGREVEGLKGEVEGARASLRAAHARAEAQKDSLLRARQEREAATAERHAA
IVRLASGESGKPSRPVPLPSSEPVPSSTASSLPPSPPPPPPPPHANLSPS
LQGPAALPPKVASSSSLGSSVSSHPSQTHSPSGPANSTFGSSSALPVKET
ATTSPASAPSTAATAGTDDHVKALSDGFDDNFGAHVTAASFEADGNSKHP
NQGGFGGGRDDDFDFPAPEAGGMAGIGGISDTFPAPETMQAQAAGTTRAE
TTSSTGGKGSVMSSDAFASDPFAFPDDDAFGSSLPSSSLPPPAAAPAEGK
KDDVNDAFSSNAFDKF

mRNA from alignment at CM002460.1:220832..222832+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2902 ID=rna2902|Name=rna2902|organism=Nannochloropsis gaditana|type=mRNA|length=2001bp|location=Sequence derived from alignment at CM002460.1:220832..222832+ (Nannochloropsis gaditana)
ATGTCCAGCGAGGATCGGGCCCGGTACCTGAACCATTTCGGGCCGTGCGA
CGTGAACGGCGACGGCTTCGTGGACGGGCcccaggcggtggagctTTTTT
CCCGGTCGGGCTTGGACCGAAGCGTCTTGGGCAGAGTCTGGGACCTGGCG
GACGCGGACAAGGACAGTCGGCTGAGCCCCGGGGAGTTCGCGGTGGCCAT
GCACCTGATCGTCTGTATCAGCAAGCGgggcctccctgtccccgagcgcc
tccccccctccttgacctcctccctttcccctccccccgctccttccgcc
ccggcccccaACGCCGCTGCTgtaccttccccttccccccccgcccccgc
tcgcacccattcccttcctcaacATGCAACTGCGAGCACCCCAgaggcca
cgccctccctgaccgcctcccccgccaccgcccccctcaTGGGCCaatcc
cttcccgcctcgtCCTTGGCCGGTTTGggctccaccctctccgAATCGAc
ccgcccaccctccacttccctctcGGCCACGGGCACCCTACCCCCCTCGG
GTaacggcgaggagggcctgggcggggccgtggcgggcGTGCAGGCATTG
GCGCAAAAGTTGAAAGCGGAGCACATCGCGCTCAAGGCCTCCGTGGATAC
GAACCAAGCAGACGCAGCGCGGGCGCAGGAGACGCTCGCCAAGACCTTGG
AGGAAGTGACGGGCCTCCAGGGAGAGCTCTCGAGGCTGCGTCAGCTGGCT
GCGACAGCTGACGAGGAACAACGGCAAATCTTCCAGTCCTTGGGGGCGGC
CCGCAAACATCGGGAATTGTtgttgggggaggtggaaaaagcCCGAGCCG
AGGTGGACCGGTTGCAGGCACAGAAATCCtccctggtggaggagatggcg
agcCTAAAGGTGGAAGCGAGCAGTGTCCAAGCCAGTAGGGAGGGGATCGC
GGCGTTGGCTGAAGAGCACCAGGGCGAGGCCGAAGCCGCCCAAGCAGAGA
CGACGTTGCTCCATTCGCTACTCTCTGCCATGGTGGGGACAAGTGcccgg
gtggggagggaggtggagggtctgaagggagaggtggagggtgcTCGGGC
CTCCCTGAGGGCAGCGCACGCCCGGGCAGAGGCCCAGAAAGACTCCTTGC
TGCGGGCGCgacaggagcgggaggcggccacggcggagCGGCATGCCGCC
ATCGTCCGGCTGGCATCGGGGGAGTCGGGCAAGCCCTCGAGGCCCGTGCC
ATTGCCTTCCTCCGAACCTGTCCcgtcgtccaccgcctcctccctccctc
cctcccctccccctcctccccctcctcctcatgccaacctctctccctcc
ctccaaggtCCCGCTGCTTTGCCCCCGaaggtcgcctcctcctcctctct
tggctcctccgtctcctcgcACCCGTCCCAGACCCATTCCCCCTCCGGTC
CCGCCAACTCCACCTTCGGCAGCTCTTCGGCCTTGCCTGTTAAGGAAACT
GCAACCACATCCCCCGCTTCCGCGCCTTCTACCGCAGCCACCGCGGGAAC
AGATGACCATGTCAAAGCCTTGAGCGACGGTTTCGACGACAATTTCGGGG
CGCACGTGACCGCGGCAAGCTTCGAGGCAGACGGGAACTCGAAGCATCCC
AAccaaggaggctttggaggcgggagagacgACGATTTTGATTTCCCCGC
GCCCGAGGCCGGTGGGATGGCGGGCATCGGCGGCATCTCCGACACCTTCC
CTGCTCCAGAAACGATGCAGGCCCAGGCTGCGGGCACCACGCGGGCTGAG
ACAACGTCCTCcacgggcgggaaagggagtgtGATGAGCAGCGATGCCTT
CGCCTCGGAccctttcgccttccctgACGACGATGCTTtcggttcctccc
tcccttcttcctccctgccccccccggcagCCGCTCCtgcagaggggaag
aaggatgatgTGAACGACGCCTTCAGTTCGAATGCTTTCGACAAGTTTTA
A

Coding sequence (CDS) from alignment at CM002460.1:220832..222832+

>rna2902 ID=rna2902|Name=rna2902|organism=Nannochloropsis gaditana|type=CDS|length=2001bp|location=Sequence derived from alignment at CM002460.1:220832..222832+ (Nannochloropsis gaditana)
ATGTCCAGCGAGGATCGGGCCCGGTACCTGAACCATTTCGGGCCGTGCGA
CGTGAACGGCGACGGCTTCGTGGACGGGCcccaggcggtggagctTTTTT
CCCGGTCGGGCTTGGACCGAAGCGTCTTGGGCAGAGTCTGGGACCTGGCG
GACGCGGACAAGGACAGTCGGCTGAGCCCCGGGGAGTTCGCGGTGGCCAT
GCACCTGATCGTCTGTATCAGCAAGCGgggcctccctgtccccgagcgcc
tccccccctccttgacctcctccctttcccctccccccgctccttccgcc
ccggcccccaACGCCGCTGCTgtaccttccccttccccccccgcccccgc
tcgcacccattcccttcctcaacATGCAACTGCGAGCACCCCAgaggcca
cgccctccctgaccgcctcccccgccaccgcccccctcaTGGGCCaatcc
cttcccgcctcgtCCTTGGCCGGTTTGggctccaccctctccgAATCGAc
ccgcccaccctccacttccctctcGGCCACGGGCACCCTACCCCCCTCGG
GTaacggcgaggagggcctgggcggggccgtggcgggcGTGCAGGCATTG
GCGCAAAAGTTGAAAGCGGAGCACATCGCGCTCAAGGCCTCCGTGGATAC
GAACCAAGCAGACGCAGCGCGGGCGCAGGAGACGCTCGCCAAGACCTTGG
AGGAAGTGACGGGCCTCCAGGGAGAGCTCTCGAGGCTGCGTCAGCTGGCT
GCGACAGCTGACGAGGAACAACGGCAAATCTTCCAGTCCTTGGGGGCGGC
CCGCAAACATCGGGAATTGTtgttgggggaggtggaaaaagcCCGAGCCG
AGGTGGACCGGTTGCAGGCACAGAAATCCtccctggtggaggagatggcg
agcCTAAAGGTGGAAGCGAGCAGTGTCCAAGCCAGTAGGGAGGGGATCGC
GGCGTTGGCTGAAGAGCACCAGGGCGAGGCCGAAGCCGCCCAAGCAGAGA
CGACGTTGCTCCATTCGCTACTCTCTGCCATGGTGGGGACAAGTGcccgg
gtggggagggaggtggagggtctgaagggagaggtggagggtgcTCGGGC
CTCCCTGAGGGCAGCGCACGCCCGGGCAGAGGCCCAGAAAGACTCCTTGC
TGCGGGCGCgacaggagcgggaggcggccacggcggagCGGCATGCCGCC
ATCGTCCGGCTGGCATCGGGGGAGTCGGGCAAGCCCTCGAGGCCCGTGCC
ATTGCCTTCCTCCGAACCTGTCCcgtcgtccaccgcctcctccctccctc
cctcccctccccctcctccccctcctcctcatgccaacctctctccctcc
ctccaaggtCCCGCTGCTTTGCCCCCGaaggtcgcctcctcctcctctct
tggctcctccgtctcctcgcACCCGTCCCAGACCCATTCCCCCTCCGGTC
CCGCCAACTCCACCTTCGGCAGCTCTTCGGCCTTGCCTGTTAAGGAAACT
GCAACCACATCCCCCGCTTCCGCGCCTTCTACCGCAGCCACCGCGGGAAC
AGATGACCATGTCAAAGCCTTGAGCGACGGTTTCGACGACAATTTCGGGG
CGCACGTGACCGCGGCAAGCTTCGAGGCAGACGGGAACTCGAAGCATCCC
AAccaaggaggctttggaggcgggagagacgACGATTTTGATTTCCCCGC
GCCCGAGGCCGGTGGGATGGCGGGCATCGGCGGCATCTCCGACACCTTCC
CTGCTCCAGAAACGATGCAGGCCCAGGCTGCGGGCACCACGCGGGCTGAG
ACAACGTCCTCcacgggcgggaaagggagtgtGATGAGCAGCGATGCCTT
CGCCTCGGAccctttcgccttccctgACGACGATGCTTtcggttcctccc
tcccttcttcctccctgccccccccggcagCCGCTCCtgcagaggggaag
aaggatgatgTGAACGACGCCTTCAGTTCGAATGCTTTCGACAAGTTTTA
A

Synonyms

Publications