rna2885, rna2885 (mRNA) Nannochloropsis gaditana

Overview
Namerna2885
Unique Namerna2885
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length567
Alignment locationCM002460.1:164845..165711 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100981g1.7938.mrna
Orig protein idgnl|cribi|Naga_100981g1.7938
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:164845..165711 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100981g1gene2762Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2885rna2885-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27796.1cds2877Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2885 ID=rna2885|Name=rna2885|organism=Nannochloropsis gaditana|type=mRNA|length=567bp
ATGGAAATAAACGTTTCACAAGGGATTGAGGATTTCGATGTTGGCCAGCC
CTCCCAGCACCTTATTGGGCTCCTGGGGTGCTTTGAGGACCGAAAGGCAG
TCTACTTGGTTCTGGAGCTCAGCCGAGGGGGCGATTTGCACAAGTACCTG
CGACGACACAAGGGGCTCCTGGAGGAATCCGAGGCCAAAGAGATCATAGT
TCAAATCCTTTCGACCGTGGCCTTTTTGCACCGTCACCAGGTCCTCCACC
GAGACATAAAATTGTCGAATCTCCTCCTAGAGGACTCCCACGCCCGACCC
CTCCGCGTCAAGCTGTCTGATTTTGGGCTGGCCGTGGCGGTGGGCGAGGA
CGGAGAAGAGGAAAAGAGGGGCTTTGAGGGAAGGGAAGGAGGAACGTCCG
TGACAATGCGGCATACATACGGGACGCCCGACTACATGGCCCCCGAGGTT
CTTTTCGATGGCGCGAGACACGGGCCGGCTTCGGACGTGTGGTCGGCTGG
CTGCCTGTTTTACACCCTCTTGGTGGGCCGGGGGCCTTTTCGATCATCCT
CCAGTCTGCCCTTCTGA
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protein sequence of rna2885

>rna2885-protein ID=rna2885-protein|Name=rna2885|organism=Nannochloropsis gaditana|type=polypeptide|length=262bp
MTVAEAVAAASDAGAWRGNFSLREETRRGDQGGGEGGKEGGKEGGKEGGK
EGGKEGGKEGGEEGGRAARMLRACRGGRPQAWPVSDPVIGISDKENSRAA
FTPHTGRYRPYPPPTGGEEQLPTASPNGRTGRREHDGSTAASRMATDSPR
GHPHGQCRMPLDPKSPCPASGGVIHLPGVGRARQEKSGALSVCFDVDGSV
VRVDASGSCVYYRESPRVAEQSYPLGVSTSEQGGAWKGGLSGTALPKELR
RKLKIVWKHFLT
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mRNA from alignment at CM002460.1:164845..165711+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2885 ID=rna2885|Name=rna2885|organism=Nannochloropsis gaditana|type=mRNA|length=867bp|location=Sequence derived from alignment at CM002460.1:164845..165711+ (Nannochloropsis gaditana)
ATGACGGTGGCAGAAGCGGTAGCGGCAGCGAGTGACGCCGGTGCTTGGCG
CGGGAATTTCTCCTTGCGggaggagacaaggagaggggatcagggaggtg
gagagggagggaaggagggcgggaaggagggagggaaggagggagggaag
gagggcgggaaggagggagggaaggagggcggggaggagggagggagggc
ggcacgCATGCTGCGGGCGTGTAGGGGAGGCCGCCCACAGGCATGGCCAG
TGTCCGACCCCGTCATCGGCATTAGCGATAAGGAAAATAGCAGGGCCGCT
TTCACGCCACATACGGGGCGCTACCGCCCTTACCCTCCCCCGActggcgg
cgaggagcaACTTCCCACAGCCAGTCCCAATGGCAGGACAGGACGGCGCG
AGCACGACGGTTCCACGGCTGCCAGCAGGATGGCCACCGACTCCCCCCGA
GGGCATCCTCACGGTCAGTGCCGTATGCCTTTGGATCCCAAGTCTCCTTG
TCCCGCGTCCGGCGGCGTCATACACCTTCCTGGGGTCGGGCGGGCTCGCC
AAGAGAAATCGGGGGCGCTCTCCGTCTGCTTCGACGTGGATGGGAGCGTG
GTCCGGGTGGATGCCAGCGGGTCGTGCGTCTATTACCGAGAAAGCCCGAG
GGTAGCCGAGCAGTCCTATCCCCTGGGTGTCTCCACATccgagcagggag
gcgcttggaagggcgggcTAAGTGGCACGGCGCTGCCTAAGGAGCTACGA
AGGAAACTGAAGATTGTGTGGAAGCATTTTTTGACGTAGCGGACGGTATG
TCGAAAGACAAAGTGCAAAAAAGAGAAATCAAGCGGGCATTGAAGAACAA
ACAAAAAATACATGAGG
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Coding sequence (CDS) from alignment at CM002460.1:164845..165711+

>rna2885 ID=rna2885|Name=rna2885|organism=Nannochloropsis gaditana|type=CDS|length=789bp|location=Sequence derived from alignment at CM002460.1:164845..165711+ (Nannochloropsis gaditana)
ATGACGGTGGCAGAAGCGGTAGCGGCAGCGAGTGACGCCGGTGCTTGGCG
CGGGAATTTCTCCTTGCGggaggagacaaggagaggggatcagggaggtg
gagagggagggaaggagggcgggaaggagggagggaaggagggagggaag
gagggcgggaaggagggagggaaggagggcggggaggagggagggagggc
ggcacgCATGCTGCGGGCGTGTAGGGGAGGCCGCCCACAGGCATGGCCAG
TGTCCGACCCCGTCATCGGCATTAGCGATAAGGAAAATAGCAGGGCCGCT
TTCACGCCACATACGGGGCGCTACCGCCCTTACCCTCCCCCGActggcgg
cgaggagcaACTTCCCACAGCCAGTCCCAATGGCAGGACAGGACGGCGCG
AGCACGACGGTTCCACGGCTGCCAGCAGGATGGCCACCGACTCCCCCCGA
GGGCATCCTCACGGTCAGTGCCGTATGCCTTTGGATCCCAAGTCTCCTTG
TCCCGCGTCCGGCGGCGTCATACACCTTCCTGGGGTCGGGCGGGCTCGCC
AAGAGAAATCGGGGGCGCTCTCCGTCTGCTTCGACGTGGATGGGAGCGTG
GTCCGGGTGGATGCCAGCGGGTCGTGCGTCTATTACCGAGAAAGCCCGAG
GGTAGCCGAGCAGTCCTATCCCCTGGGTGTCTCCACATccgagcagggag
gcgcttggaagggcgggcTAAGTGGCACGGCGCTGCCTAAGGAGCTACGA
AGGAAACTGAAGATTGTGTGGAAGCATTTTTTGACGTAG
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Synonyms
Publications