rna2881, rna2881 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2881
Unique Name	rna2881
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	4249
Alignment location	CM002460.1:154435..155070 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100149g2.2652.mrna
Orig protein id	gnl\|cribi\|Naga_100149g2.2652
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:154435..155070 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100149g2	gene2758	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2881	rna2881-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27803.1	cds2873	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:154435..155070+
coding sequence from alignment at CM002460.1:154435..155070+

mRNA sequence

>rna2881 ID=rna2881|Name=rna2881|organism=Nannochloropsis gaditana|type=mRNA|length=4249bp
CATCTAATCATTACGCATCCAACACACAGCTCTTAGTGGAGAAATTCGCC
GTGGGTGTATCTTGCTCCTTTTGTAGATTCCTCTCCTGAGCGTCGCCCTT
CGACGTGTCTGCGGGTCCATTGCAAGCAGGCGCTTCGGAAAACAGGGGGT
ACTACAAGAGTAGGGCAAACAACCTGCTTCGCAACCACAGAGTAGCGTCC
ACTGGAATTGCCAAGCCGAGACGGGAGTCATGAAAGGGAGCCCGTCCCTC
TTGAGTCCCGCACGCCTGAAGGCGGCATTTAGGTGGCCTGGCGGGTCTAA
AAAATCCAAGAACGGATTTCCCGGCTCACCTAACAGCAGCAGCCCAATCA
GCAGCCCATCCACTTTCGACATGGAAGGTCCAAACAGCGGGAGAAGCATT
GAAGAGCCTTTGACTCCAAGCCCCAGAGGTTTGGTCAACGCAAAACTTTT
GCCTGAGTCGTATTCCGAAAGAGAAGGCGAGGCAGAGGCCTGCGGAGGCC
TCGGCTGGGACGCACCAGGCTTCTCACCTCAAGCTCGTGGAAAGGAAGGA
GCAATCGTCGAGATGGAGGAGGACGACGCGGAGATGGAAAAAGGGATAGC
CGAAGGGAAGAAAGAGGCAGAAGGAAGGGAGGCGCTGGAGGAAGAAGGAA
AAGAGGAGGGGGAGGGCGGGGAGGAGGACATCCTCTGCGTCCTGGATGTG
GCTTACGGGGAAGGGGCAGTGGATCGGATCTCTTTGAAGGAGGGGGATGA
CCCCGCCTTGTTGGCCACGGCTTTTCGAGCGAAGCATGGTTTGGGCACTG
AGAGCGTGAATATTTTGAGCGAGGTGATTGCCCGAACCATGAAAGAGCAC
CAGGAAGGGGAGGTGGAGGCCGGGGAAGCGGGGGAGGGAGGGAAGGAGGG
GGTGGAGGAGGAAGAAGGCGGATGGACAGGGGAAAAGGAGCAAGGGCTGG
GAACGGGGGGGCACGCGTTTAAGGAGGAAAAAATAGGAAAGGAAGAAGAG
GAAGAGGAGATAGAGGTGGTGGAGAGGGTGGGGGGAGGAGAAGCGGGGGA
GGAGTTGGAGGAGGGACAGGGGGGGCAGGACGAGGAGACGAACGAACGGG
TGGCCATTGAGGAGAATCGGACAGAAGGGGAAGGAGGACTGGAGAGGGAG
GACGTCCCTACAAAACACGGAAAATACGAGGGGAGTTCCGGCACAGGTGC
GGCGACAGCCGTGCCCGGCAACGCGGTGCCTTCCCCCTCGGCCAGTCCCT
ACCTCCCTTCCTCGCCAGGCACCTCCCTCCCTCCTTCGCCCGAGGAATCC
TCCAACGAGGCTCTCTTCAACCGGCTCAAGAACGCTTGGATGAAGAATAA
ATCCCCCTCCACCCCTGGTTCCTCCCCTTCCTCCCCTTTCTCTCGGCGGG
CCCGTGGGAAGGGCCATCGCACCCCCGCTTCCCCCCTTGTCCGCCCTCCG
CCCACCCTCTCTCCTTTCCTTCGTCCGCTTTCCCGCCCTGCTCGTCTGGA
CAAGCTTAAGGAAACTTCACCCAGTCGTCAGCCTGGCAGCAATGCCAACG
ACCAAGGCCAGAAGGCCTCGCAGGAGGGACTCGCCCCCGCCGTCGCTAAA
TCGGAAAATTCTTGGCTTTTTCTCACTCAAACCCAAGCCAGCGACACCTT
TTGTCCGGCCAGTCCTCCCTCCAAACCTCGTCCCTCGATGTCATCCCCTC
CGCACTACCAGCTGCCACCATTGCGCTTCCTGCCTCCCGTTTACAACGAA
GAAGGAGGCAGCTGGAGCCCTGCCAAGGGGAAACAGCGACGGAAACAAGG
TGGCGCTTCGCACCAAGAAGCCTTTGCCCGTTTGTATGCCGAGGCCAAAC
TACGACAAGGACGAAAAGAGGAAGCCTTGAGGAGACAATGCGAACGGGAA
GCAGAAGCACGTCGGGCGTGTATGGCCGCCATGGTGAACCGGAATCGGGA
GGTGACCGGGCAGGGTACGGAGGGTCGGGAGGGCGAGGACGGGAGGGAGG
ACATCTGCGACCGTTTGTACGCACAGGCGAAAATGCAACAGGAACGCTTG
GCCAAGGCGCAGGCGGACGCGCAGGCTGCCAAAGCCAAGGGCCCCGGGGA
AGGGGAAGAGACGTGGTCGTGTCCTCGGTGTTTTTACGAGAACGACGGGA
CGGAGGCCCGGTGCCGCAACGTGTTGGCCCGGAAAACCCCGATGAGCGAC
CTGGTCCCCAACGCCTGGACCCATTACCCCAAAGATACCACCGTGGTTTA
CAACCGTCGATTAGTGAACGACGAGGACGTAATCCGTTGCGCCCACGCCC
GCCCTGTCCTTTTCCAGCCGACGAACTACGGACGGGAGCAGTATTCTTCC
GTCTACATTGCCCCGTTGCCCTTGTCCGTGCGGGATCGCCCTGACAATGT
CTTTGAAGAATTATTCGCGCACCGTCGACACCGAGATGAGGAGCGTCGAC
GCCTGGTGCAAGAGGGGGAGGTCAAAGCCGCTCAAGGTTGCTCATTCCAA
CCCAGAATAAACGAGCATTCGGCGAACTTGGTGGAGGCCCGCGAACAAGA
GGAAGAAGCACAAATTACCTTGACGGAGGCCGAAAGCGAAGGCTTGGAGA
CCCTGGAGGCAATTGTCGCCAAGAAAAAGGAAAAGTTTGCCCTGATCAAA
GAAGCACGGCGGGCTGCTCCCTACTTGGCCCGATGCGCCCATGCCCGGTG
CGTTTCCGAAGAGCGCTGTTCATTCCAACCCCAAGTGGGCGTGGGGCATT
ACTACGACGCAGATTTCCATCCGGCATGGATGGCAACGGCCCGTGGGGCC
CCGGACAGCCCCAGGGGATTGGCAGATGGGTGGGAGAAAGAAGGGGAAAA
AGACCGGAACAACACGGACGTCTTCACGCGTTTGGCAGAGGCGGACGTGG
AGAAACGTCGGCTGGGGAGCCAGGCGCGGCAAATCGAGGTAGAAAGCGCC
ACCTTCCGACCGCAAACAACGGGCATGCCGGCCCCGCGACGGGATGCATT
GGTGCACGGGAACAGCGTGAGCGAGTATTTGTACGGCGAACGACTGTCCC
GGTGGGCGAAGCAGCGAGAGGCGGAACAGGCGTTGGAAAGGCAGGAACGT
GCCGCCCGAGAGGGGCCGTTTGCGAACGCCAAGAGCCGAGGCATGATCAG
GAGGATGAAGGAAAGTACCTACCGAGCAGTGTTTGCGGCGCTCTTTCCCA
CGAACACGGATTCAAGTCCCGGACAGGACGCAGGAAAGGAGGGAGGGCAG
AAAGAAGAGGAACTGGTCTTGGCGCAGGCATCGCTCCAGCGGATCAAAGA
GCCGCGGTTGGCGCAGGTGCTGACCCTGGTGCTCACTCGTACGACCCCAT
CCGCGGCCTCGCCCTCGCCCTCGCCCTCCCCCTCCCCCGCCTTACCCACC
ATGCATTTCCAGGAATTTTCCCGCCGACTCGACCAACACCTCCGTCACTC
CATCCCCTTGATGAGCGACCTGATCATGCACGGGTGCCGGCCTGGGGAAG
GCTTGGACCACGAACTGACCTTCCATCCCCGCTTGGCCCCCAAGACGCAC
AAAATGACCCAAGACCGGTGGACGACCCGAAGCCGACAGGAGGCCTTCGC
GCTCTTGCACAGCGAAGCCGCCCTGTGGGAAGCCCGTCGAGAGGACGCTC
GAAAATTGAAGGCGGAACGTCTCTTGGACGGCCATACCTTTCAACCCTTG
CTCTTAACCTCCCGACCGCCCGGGTGCAAAGGAAGAGGCCGGACAGGGCG
CTACCGGTACCCTGTGGAAATGCTTCTCCTGGAGCAGGAACACGGGCAGA
TGCCCAAGGTGGGCCGGGAGCAGGTCAAATTGGACGCGCGTGCCCGCAGC
GTCCAAGCCGTCCGGGGCCACGGCCGCATCTCCGGCAATCCCCGGGCGCG
GTCCACACCCGCCATTCGGAAAAAGGGCATCTACAATATCACTCTTACCA
AGGTGGACGACGGCACCTGCGTGCTGCCCGGGGAAAATCTGCGGAGATTC
TTGCAGGAACCTCCCAGGGAACCTTCTTTCGTCAAGAGGGAAGTGTACGT
CGATTTATATCGGCCCATGACCCCCGCCAACCCCAAAAGTCATCAGTCTT
TCCCCCTCCTGGAGCATCGACCGCTACCCTCGGAACATCGGACCCTCCGA
CCCCGCAAGGAGGCTTGGTACGCGGCCGTGCGCCGGCAAGAAGCACGGCA
ACGACAAGGTGGTTCAAGAGATGTCAGTGCCTCCCGAAAACAAAGCTGA

protein sequence of rna2881

>rna2881-protein ID=rna2881-protein|Name=rna2881|organism=Nannochloropsis gaditana|type=polypeptide|length=189bp
MDVKRMEKGKEKQVRVSLVPTLSLSRTDMLPTISFLCVRDRSLSAARLIC
TINMVALAMDHQDKIRVSCAMRMRSRGWVCDAFTRGETGPELETKGKRGE
KRVLRQEISIYTRKSVLSTQEERDRRMSKNYNRGMILKGRKEILSLVNLN
SRQKRLKLGAEIGGIKGLHCDMPALKDRRERIAVPEANL

mRNA from alignment at CM002460.1:154435..155070+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2881 ID=rna2881|Name=rna2881|organism=Nannochloropsis gaditana|type=mRNA|length=636bp|location=Sequence derived from alignment at CM002460.1:154435..155070+ (Nannochloropsis gaditana)
ATGGACGTCAAAcggatggaaaaaggaaaggaaaagcaggtcCGGGTGTC
TTTGGTCCCGACTTTATCACTTTCCCGCACGGATATGCTCCCCACCATTA
GCTTTTTGTGTGTGAGAGATAGATCTCTTTCCGCGTAAGGATGCGTGAAC
CAGATCATCCCTCATTATATATTGCATATTTTATATCAACAATGATGGAG
TGCACGATTAATATGTACGATAAATATGGTTGCTCTCGCAATGGATCATC
AGGATAAgatccgggtatcctgcGCAATGCGAATGAGATCAAGAGGCTGG
GTATGCGACGCCTTTACAAGAGGTGAGACAGGGCCTGAACTGGAGaccaa
aggaaaaaggggggaaaaaagagtaTTAAGGCAAGAAATAAGCATTTATA
CACGGAAGTCTGTCCTTTCGAcgcaggaggagcgagaCAGGCGCATGTCG
AAGAATTATAATCGTGGGATGATtttgaaggggaggaaggagattcTGTC
TCTTGTGAATTTAAATAGCAGACAGAAAAGATTGAAATTGGGCGCAGAAA
TTGGTGGCATTAAGGGGCTTCACTGCGATATGCCGGCCTTGAAAGaccgg
agggaaaggatcgCGGTGCCGGAAGCAAATTTATAA

Coding sequence (CDS) from alignment at CM002460.1:154435..155070+

>rna2881 ID=rna2881|Name=rna2881|organism=Nannochloropsis gaditana|type=CDS|length=1140bp|location=Sequence derived from alignment at CM002460.1:154435..155070+ (Nannochloropsis gaditana)
ATGGACGTCAAAcggatggaaaaaggaaaggaaaagcaggtcCGGGTGTC
TTTGGTCCCGACTTTATCACTTTCCCGCACGGATATGCTCCCCACCATTA
GCTTTTTGTGTGTGAGAGATAGATCTCTTTCCGCTGCACGATTAATATGT
ACGATAAATATGGTTGCTCTCGCAATGGATCATCAGGATAAgatccgggt
atcctgcGCAATGCGAATGAGATCAAGAGGCTGGGTATGCGACGCCTTTA
CAAGAGGTGAGACAGGGCCTGAACTGGAGaccaaaggaaaaaggggggaa
aaaagagtaTTAAGGCAAGAAATAAGCATTTATACACGGAAGTCTGTCCT
TTCGAcgcaggaggagcgagaCAGGCGCATGTCGAAGAATTATAATCGTG
GGATGATtttgaaggggaggaaggagattcTGTCTCTTGTGAATTTAAAT
AGCAGACAGAAAAGATTGAAATTGGGCGCAGAAATTGGTGGCATTAAGGG
GCTTCACTGCGATATGCCGGCCTTGAAAGaccggagggaaaggatcgCGG
TGCCGGAAGCAAATTTATAAATGGACGTCAAAcggatggaaaaaggaaag
gaaaagcaggtcCGGGTGTCTTTGGTCCCGACTTTATCACTTTCCCGCAC
GGATATGCTCCCCACCATTAGCTTTTTGTGTGTGAGAGATAGATCTCTTT
CCGCTGCACGATTAATATGTACGATAAATATGGTTGCTCTCGCAATGGAT
CATCAGGATAAgatccgggtatcctgcGCAATGCGAATGAGATCAAGAGG
CTGGGTATGCGACGCCTTTACAAGAGGTGAGACAGGGCCTGAACTGGAGa
ccaaaggaaaaaggggggaaaaaagagtaTTAAGGCAAGAAATAAGCATT
TATACACGGAAGTCTGTCCTTTCGAcgcaggaggagcgagaCAGGCGCAT
GTCGAAGAATTATAATCGTGGGATGATtttgaaggggaggaaggagattc
TGTCTCTTGTGAATTTAAATAGCAGACAGAAAAGATTGAAATTGGGCGCA
GAAATTGGTGGCATTAAGGGGCTTCACTGCGATATGCCGGCCTTGAAAGa
ccggagggaaaggatcgCGGTGCCGGAAGCAAATTTATAA

Synonyms

Publications