rna2873, rna2873 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2873
Unique Name	rna2873
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	843
Alignment location	CM002460.1:120013..121244 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100149g11.2654.mrna
Orig protein id	gnl\|cribi\|Naga_100149g11.2654
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:120013..121244 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100149g11	gene2750	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2873	rna2873-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27805.1	cds2865	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:120013..121244-
coding sequence from alignment at CM002460.1:120013..121244-

mRNA sequence

>rna2873 ID=rna2873|Name=rna2873|organism=Nannochloropsis gaditana|type=mRNA|length=843bp
ATGCGTCCTGGGCGTGGCGGGCCTTTTCCTCGCCTTCCTGTTGGCCTGCA
ACAGCATCAAGAACAAGGAGCGGAAGCACGTCACCGGCCTGCTTGCCTCC
GTCATGTTCTTCCAGTTCCTCGCGGCACTCGTGCGTCTTCGCCCTCCCTC
CTTCCTTCCCTCGGTCCCTCCCTCGTTTCCTCCCTCTTTCCCCTTCCTCT
CTCCCTCCTCCGTCCGACAAGCTTCCTCATACGCTCCCTCGCTCCCTCCC
TCCCTTCCTCCCTCCGTTTCTCCCTGCAGGGTTGCGTGGTGGCTTGGGTG
TGTCTGAACCAAATTGCCGCCTCCGACCTGGACGTAACGTTCCCCGACGC
CGACTTTTATTTCGGGAAGGGCTGGTTCGGCATGACAGTCTCCAGCGCCA
TTGCCTTCTTCGCCTTCTGTGGAACGGCCCATGCCTCCCGGAAAGAACGT
GCGGCTGAGAGGGCGGCCTTGCGGAAGAACAGTCTGGCTGCGGGGGAGGA
AGACGGAGCTTATTCCTACGACGAGGGGGAGGAGGAATACAAAATGGATG
GGATGCAGGCGGTGGTGACGAATCCGAAAGCTTCTGTGTACCTTAGAGGC
GTCAACTGTAAAGCATCATGGCAAGAAAAATATCCAGGCACACATACATA
CATAAACTGGGAAATAGCGATGGAAGGGGGGAAGGAGAGGAGGAGGGAGG
TAGGGAAGGAGGGAGGGAGGAACAAAGTTCATGGCGCGTGCTTGAAATTC
AGTAAAGAAGGTGCTGCGGACATCGTGGAAGAAGCAAGAAGCAAAATCTT
CCGAATCTCTTTCATTTATACGGTACCCATCCTGTCTGTATAA

protein sequence of rna2873

>rna2873-protein ID=rna2873-protein|Name=rna2873|organism=Nannochloropsis gaditana|type=polypeptide|length=103bp
MRICSTFGTFLYAGSVVLAAWSLLIRGWSVSDEPYLTVDGLPTSIFMRMG
PFGMKARVSQAGVPVYMADGFHWCSRTDPGPIFDEPSHQVAYCSFLTTSQ
IAG

mRNA from alignment at CM002460.1:120013..121244-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2873 ID=rna2873|Name=rna2873|organism=Nannochloropsis gaditana|type=mRNA|length=1232bp|location=Sequence derived from alignment at CM002460.1:120013..121244- (Nannochloropsis gaditana)
ACAAATCCTTCCTTTCCCTCCCTCGATAAATTTCCTCCTCAGTCACTTCT
CTCCCCGCGAAAAAACACCGTGCTTCTACCCTGCACAACAAAAACAGCTC
TCTGACATGTACAAAGTGGGGGACGCGAGTGTTGTGGTGGTGTTGGGACG
TTATTAAGGCCGGGAAGTAGGTGCCATAGCCGACTTTTGCCCTTCGGACG
TCCCTCGCTGTTCTTGAACAGTACTTGCTCACGATTCGTTGTGCTTCCAT
AACCTTTGCACCCTCCTTTCACCACCAGGAAACCGTACATAAAGGGTAAT
AATGCGTATCTGCAGCACCTTTGGTACGTTTTGTCGGGAAGTTGTTGTCC
GAGTGGGTGGCTGTGTCGCAGGAAAATGGAGGAGGCACGAGGCGACCGAG
ACACTCTCGTCATGTGTTGTCACACATCCCTGGTTATTCACTCTCTATGT
GTCTTTGCGACTGCGTTTCCACTTGTTCCACAGGCACATTTTTGTACGCG
GGGTCAGTGGTCTTGGCGGCATGGTCTCTTTTAATCAGAGGTAAATATTT
GTCAGTGGCATTCGCTCTTGTTCTCAGTCCCTCCCTTCTTACCTCAAAGC
ATCTCGATACTTCCCTCAAACTTTCCTGTAAAAATGTGTGGATTGCTTGC
GAAATCAATGCATTCATCCGGACATGTCGTGAGCGTATGCGAACTGGAGT
GCCCACGCCTGCCACCTTAATTACGCTTCTTTCCCTTGACCGTCCGCGCT
CTCTCCATTTTTGGCCTCTAGGCTGGTCTGTCTCTGATGAGCCCTATTTG
ACAGTGGACGGGCTACCCACATCCATCTTCATGCGTATGGGTCCTTTTGG
GATGAAGGCACGCGTTAGCCAGGTAAAGCAAAGGGGAAGAGGCAGGGCAG
GAACAGGGAAAAGGATGGCGATGACTATTGAAAAGGGTGTGTGAGGCATC
AAGTGGCCATGTGGCTTGTGACAAGCATGCTTTTATTACGCCATGTAGCC
ATTTCCGCGTTCCGTTGCCTCCCCTCTTTGTCTTACGCGACGCCATCCCG
TCCGCCCTCCCTCCCGCCATCCCTCCCGCCCTCCCTCCCGCCCTCCCTCC
CAGGCCGGCGTCCCTGTTTACATGGCGGATGGCTTCCATTGGTGCTCGCG
GACCGATCCGGGGCCTATCTTTGACGAGCCCAGCCACCAGGTCGCCTATT
GTTCTTTTTTGACCACCTCACAGATCGCTGGT

Coding sequence (CDS) from alignment at CM002460.1:120013..121244-

>rna2873 ID=rna2873|Name=rna2873|organism=Nannochloropsis gaditana|type=CDS|length=1236bp|location=Sequence derived from alignment at CM002460.1:120013..121244- (Nannochloropsis gaditana)
GCCGGCGTCCCTGTTTACATGGCGGATGGCTTCCATTGGTGCTCGCGGAC
CGATCCGGGGCCTATCTTTGACGAGCCCAGCCACCAGGTCGCCTATTGTT
CTTTTTTGACCACCTCACAGATCGCTGGTGCTGGTCTGTCTCTGATGAGC
CCTATTTGACAGTGGACGGGCTACCCACATCCATCTTCATGCGTATGGGT
CCTTTTGGGATGAAGGCACGCGTTAGCCAGGCACATTTTTGTACGCGGGG
TCAGTGGTCTTGGCGGCATGGTCTCTTTTAATCAGAGATGCGTATCTGCA
GCACCTTTGGCCGGCGTCCCTGTTTACATGGCGGATGGCTTCCATTGGTG
CTCGCGGACCGATCCGGGGCCTATCTTTGACGAGCCCAGCCACCAGGTCG
CCTATTGTTCTTTTTTGACCACCTCACAGATCGCTGGTGCTGGTCTGTCT
CTGATGAGCCCTATTTGACAGTGGACGGGCTACCCACATCCATCTTCATG
CGTATGGGTCCTTTTGGGATGAAGGCACGCGTTAGCCAGGCACATTTTTG
TACGCGGGGTCAGTGGTCTTGGCGGCATGGTCTCTTTTAATCAGAGATGC
GTATCTGCAGCACCTTTGGCCGGCGTCCCTGTTTACATGGCGGATGGCTT
CCATTGGTGCTCGCGGACCGATCCGGGGCCTATCTTTGACGAGCCCAGCC
ACCAGGTCGCCTATTGTTCTTTTTTGACCACCTCACAGATCGCTGGTGCT
GGTCTGTCTCTGATGAGCCCTATTTGACAGTGGACGGGCTACCCACATCC
ATCTTCATGCGTATGGGTCCTTTTGGGATGAAGGCACGCGTTAGCCAGGC
ACATTTTTGTACGCGGGGTCAGTGGTCTTGGCGGCATGGTCTCTTTTAAT
CAGAGATGCGTATCTGCAGCACCTTTGGCCGGCGTCCCTGTTTACATGGC
GGATGGCTTCCATTGGTGCTCGCGGACCGATCCGGGGCCTATCTTTGACG
AGCCCAGCCACCAGGTCGCCTATTGTTCTTTTTTGACCACCTCACAGATC
GCTGGTGCTGGTCTGTCTCTGATGAGCCCTATTTGACAGTGGACGGGCTA
CCCACATCCATCTTCATGCGTATGGGTCCTTTTGGGATGAAGGCACGCGT
TAGCCAGGCACATTTTTGTACGCGGGGTCAGTGGTCTTGGCGGCATGGTC
TCTTTTAATCAGAGATGCGTATCTGCAGCACCTTTG

Synonyms

Publications