rna2872, rna2872 (mRNA) Nannochloropsis gaditana

Overview
Namerna2872
Unique Namerna2872
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length801
Alignment locationCM002460.1:118563..119713 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101609g2.2325.mrna
Orig protein idgnl|cribi|Naga_101609g2.2325
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:118563..119713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101609g2gene2749Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2872rna2872-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27810.1cds2864Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2872 ID=rna2872|Name=rna2872|organism=Nannochloropsis gaditana|type=mRNA|length=801bp
CTCCCTCCTCCTCCTCCTCCTTTCCCTCAGCCCATTGCTGTACACCTTCA
TGGACGGCCAGAAGGTCCCCAAACCTATCGAAATGGTCGGTCTCAAGGAG
GAGGCAGACACCTTGGAGGCGACCGAGGACGAGCTCCGTCGCCGCATCTC
TCTCCTGCGCAGGGAGCTGACGGTCTTGAAGGAAGGGAGACGGGAGGGAG
GGAGAGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGGGGGGGAGAAGCAT
ACCCATGGGAGGCAGGCAGCGTTGGAGGTGTTGACACGGGTCATGGGCGA
GGGGCCAGGAAGGGAGGGCGAGAGGGAGAGCGGGAGGGAACGGATGGCTG
CGAACCCTATTTATCGGGCAGCATTGTTGGCGTTGGGGGTGCACGTATAA
GGTGGGAAGAAGGGCAGGAGGGAGGGCGGGAGGAAGGCCATGGTCAGGGG
TAGGTTGAGGCCTAAAGCATCATCACTCACTCTTCCCTTTCAGCCGGGTG
TTTCTCGTGGCTGGGGCGTGACGGCCTCTGTCGCCGATGCCGGCAGGAGT
GGCTGCAGTGAACGTGAAGGAAGGCTTGGGCGTTCCCGCCGAAATTTTGT
TAAGGTGGCAAGAGTAGTCTATGTGGAGGGGACGCTGTCTTCCTTTGGAG
ACACGGTTCCCCACGCCTGGCACGCAGAATGAGCATAGAGAAAGAAGGGG
AGGGATGCCCCAAAATCTATGAAGAGCAAGGCCACAAATTATGTGAAGAA
AAAAAATGCCAGAAATTATACAGACAGGATGGGTACCGTATAAATGAAAG
A
back to top

protein sequence of rna2872

>rna2872-protein ID=rna2872-protein|Name=rna2872|organism=Nannochloropsis gaditana|type=polypeptide|length=280bp
MRPGRGGPFPRLPVGLQQHQEQGAEARHRPACLRHVLPVPRGTRASSPSL
LPSLGPSLVSSLFPLPLSLLRPTSFLIRSLAPSLPSSLRFSLQGCVVAWV
CLNQIAASDLDVTFPDADFYFGKGWFGMTVSSAIAFFAFCGTAHASRKER
AAERAALRKNSLAAGEEDGAYSYDEGEEEYKMDGMQAVVTNPKASVYLRG
VNCKASWQEKYPGTHTYINWEIAMEGGKERRREVGKEGGRNKVHGACLKF
SKEGAADIVEEARSKIFRISFIYTVPILSV
back to top

mRNA from alignment at CM002460.1:118563..119713-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2872 ID=rna2872|Name=rna2872|organism=Nannochloropsis gaditana|type=mRNA|length=1151bp|location=Sequence derived from alignment at CM002460.1:118563..119713- (Nannochloropsis gaditana)
ATGCGTCCTGGGCGTGGCGGGCCTTTTCCTCGCCTTCCTGTTGGCCTGCA
ACAGCATCAAGAACAAGGAGCGGAAGCACGTCACCGGCCTGCTTGCCTCC
GTCATGTTCTTCCAGTTCCTCGCGGCACTCGTGCGTCTTCGCCCTCCCTC
CTTCCTTCCCTCGGTCCCTCCCTCGTTTCCTCCCTCTTTCCCCTTCCTCT
CTCCCTCCTCCGTCCGACAAGCTTCCTCATACGCTCCCTCGCTCCCTCCC
TCCCTTCCTCCCTCCGTTTCTCCCTGCAGGGTTGCGTGGTGGCTTGGGTG
TGTCTGAACCAAATTGCCGCCTCCGACCTGGACGTAACGTTCCCCGACGC
CGACTTTTATTTCGGGAAGGGCTGGTTCGGCATGACAGGTGCCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCATTCCCTCCCTTTCTCCCTCCCTCC
TTTTTTTTTCTTTGCTTCCTCTTTTTCCATCCACCCCGCCGCCAGTCGCT
CCGTCATTTACCCGACCCCCTTCTCCTCCTCCCTCCCTTCCTCCCGCCCT
CCCTCCCTCCTTCCCTCAACCCTCCAGTCTCCAGCGCCATTGCCTTCTTC
GCCTTCTGTGGAACGGCCCATGCCTCCCGGAAAGAACGTGCGGCTGAGAG
GGCGGCCTTGCGGAAGAACAGTCTGGCTGCGGGGGAGGAAGACGGAGCTT
ATTCCTACGACGAGGGGGAGGAGGAATACAAAATGGATGGGATGCAGGCG
GTGGTGACGAATCCGTGAGGGAGGGAAGGAGGGAGGGAAGGAGGGGGGGG
ATAGAGGTTTTGTGTCAGTGGGGGGGTTTGACGGGAGACTTGGGAGGGAG
GGAGGTTGAAGGGGGGTGTGGGAGAGGAGGAAGGAAAGCTTCTGTGTACC
TTAGAGGCGTCAACTGTAAAGCATCATGGCAAGAAAAATATCCAGGCACA
CATACATACATAAACTGGGAAATAGCGATGGAAGGGGGGAAGGAGAGGAG
GAGGGAGGTAGGGAAGGAGGGAGGGAGGAACAAAGTTCATGGCGCGTGCT
TGAAATTCAGTAAAGAAGGTGCTGCGGACATCGTGGAAGAAGCAAGAAGC
AAAATCTTCCGAATCTCTTTCATTTATACGGTACCCATCCTGTCTGTATA
A
back to top

Coding sequence (CDS) from alignment at CM002460.1:118563..119713-

>rna2872 ID=rna2872|Name=rna2872|organism=Nannochloropsis gaditana|type=CDS|length=2529bp|location=Sequence derived from alignment at CM002460.1:118563..119713- (Nannochloropsis gaditana)
GAAAGCTTCTGTGTACCTTAGAGGCGTCAACTGTAAAGCATCATGGCAAG
AAAAATATCCAGGCACACATACATACATAAACTGGGAAATAGCGATGGAA
GGGGGGAAGGAGAGGAGGAGGGAGGTAGGGAAGGAGGGAGGGAGGAACAA
AGTTCATGGCGCGTGCTTGAAATTCAGTAAAGAAGGTGCTGCGGACATCG
TGGAAGAAGCAAGAAGCAAAATCTTCCGAATCTCTTTCATTTATACGGTA
CCCATCCTGTCTGTATAATCTCCAGCGCCATTGCCTTCTTCGCCTTCTGT
GGAACGGCCCATGCCTCCCGGAAAGAACGTGCGGCTGAGAGGGCGGCCTT
GCGGAAGAACAGTCTGGCTGCGGGGGAGGAAGACGGAGCTTATTCCTACG
ACGAGGGGGAGGAGGAATACAAAATGGATGGGATGCAGGCGGTGGTGACG
AATCCATGCGTCCTGGGCGTGGCGGGCCTTTTCCTCGCCTTCCTGTTGGC
CTGCAACAGCATCAAGAACAAGGAGCGGAAGCACGTCACCGGCCTGCTTG
CCTCCGTCATGTTCTTCCAGTTCCTCGCGGCACTCGTGCGTCTTCGCCCT
CCCTCCTTCCTTCCCTCGGTCCCTCCCTCGTTTCCTCCCTCTTTCCCCTT
CCTCTCTCCCTCCTCCGTCCGACAAGCTTCCTCATACGCTCCCTCGCTCC
CTCCCTCCCTTCCTCCCTCCGTTTCTCCCTGCAGGGTTGCGTGGTGGCTT
GGGTGTGTCTGAACCAAATTGCCGCCTCCGACCTGGACGTAACGTTCCCC
GACGCCGACTTTTATTTCGGGAAGGGCTGGTTCGGCATGACAGGAAAGCT
TCTGTGTACCTTAGAGGCGTCAACTGTAAAGCATCATGGCAAGAAAAATA
TCCAGGCACACATACATACATAAACTGGGAAATAGCGATGGAAGGGGGGA
AGGAGAGGAGGAGGGAGGTAGGGAAGGAGGGAGGGAGGAACAAAGTTCAT
GGCGCGTGCTTGAAATTCAGTAAAGAAGGTGCTGCGGACATCGTGGAAGA
AGCAAGAAGCAAAATCTTCCGAATCTCTTTCATTTATACGGTACCCATCC
TGTCTGTATAATCTCCAGCGCCATTGCCTTCTTCGCCTTCTGTGGAACGG
CCCATGCCTCCCGGAAAGAACGTGCGGCTGAGAGGGCGGCCTTGCGGAAG
AACAGTCTGGCTGCGGGGGAGGAAGACGGAGCTTATTCCTACGACGAGGG
GGAGGAGGAATACAAAATGGATGGGATGCAGGCGGTGGTGACGAATCCAT
GCGTCCTGGGCGTGGCGGGCCTTTTCCTCGCCTTCCTGTTGGCCTGCAAC
AGCATCAAGAACAAGGAGCGGAAGCACGTCACCGGCCTGCTTGCCTCCGT
CATGTTCTTCCAGTTCCTCGCGGCACTCGTGCGTCTTCGCCCTCCCTCCT
TCCTTCCCTCGGTCCCTCCCTCGTTTCCTCCCTCTTTCCCCTTCCTCTCT
CCCTCCTCCGTCCGACAAGCTTCCTCATACGCTCCCTCGCTCCCTCCCTC
CCTTCCTCCCTCCGTTTCTCCCTGCAGGGTTGCGTGGTGGCTTGGGTGTG
TCTGAACCAAATTGCCGCCTCCGACCTGGACGTAACGTTCCCCGACGCCG
ACTTTTATTTCGGGAAGGGCTGGTTCGGCATGACAGGAAAGCTTCTGTGT
ACCTTAGAGGCGTCAACTGTAAAGCATCATGGCAAGAAAAATATCCAGGC
ACACATACATACATAAACTGGGAAATAGCGATGGAAGGGGGGAAGGAGAG
GAGGAGGGAGGTAGGGAAGGAGGGAGGGAGGAACAAAGTTCATGGCGCGT
GCTTGAAATTCAGTAAAGAAGGTGCTGCGGACATCGTGGAAGAAGCAAGA
AGCAAAATCTTCCGAATCTCTTTCATTTATACGGTACCCATCCTGTCTGT
ATAATCTCCAGCGCCATTGCCTTCTTCGCCTTCTGTGGAACGGCCCATGC
CTCCCGGAAAGAACGTGCGGCTGAGAGGGCGGCCTTGCGGAAGAACAGTC
TGGCTGCGGGGGAGGAAGACGGAGCTTATTCCTACGACGAGGGGGAGGAG
GAATACAAAATGGATGGGATGCAGGCGGTGGTGACGAATCCATGCGTCCT
GGGCGTGGCGGGCCTTTTCCTCGCCTTCCTGTTGGCCTGCAACAGCATCA
AGAACAAGGAGCGGAAGCACGTCACCGGCCTGCTTGCCTCCGTCATGTTC
TTCCAGTTCCTCGCGGCACTCGTGCGTCTTCGCCCTCCCTCCTTCCTTCC
CTCGGTCCCTCCCTCGTTTCCTCCCTCTTTCCCCTTCCTCTCTCCCTCCT
CCGTCCGACAAGCTTCCTCATACGCTCCCTCGCTCCCTCCCTCCCTTCCT
CCCTCCGTTTCTCCCTGCAGGGTTGCGTGGTGGCTTGGGTGTGTCTGAAC
CAAATTGCCGCCTCCGACCTGGACGTAACGTTCCCCGACGCCGACTTTTA
TTTCGGGAAGGGCTGGTTCGGCATGACAG
back to top
Synonyms
Publications