rna2866, rna2866 (mRNA) Nannochloropsis gaditana

Overview
Namerna2866
Unique Namerna2866
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1019
Alignment locationCM002460.1:109158..109890 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102645g1.8483.mrna
Orig protein idgnl|cribi|Naga_102645g1.8483
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:109158..109890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102645g1gene2742Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2866rna2866-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27815.1cds2858Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2866 ID=rna2866|Name=rna2866|organism=Nannochloropsis gaditana|type=mRNA|length=1019bp
TCCCCTGCCCCTTGAACCCTCCTCCCTGTCGGGGGCACAATCTGCGCATC
CCATGAAAAGACTCAGGCGTGTAACTATACAGTACTTATTCCCTCTCTCT
CTCCTTCTATCCCCTTGCCTTTTCGGTTCTTCCCCTGTCACAGGAGCTGT
CGCTCGTCGCGGGAGGGCTAGGGTCCACTGCCCTCAGCGAGCTCTCCTCC
CTCCACCAGGCCCTCTCCAGCCTCCTGCTCGTGGACGCCGCTGCGGAGGG
AGGGAAGGAAGGAGGGAAGGAAGGAGGGAAGGAAGGACGGAAGCGATGGA
AGAGGGACCTGCCCGCCTCCGTCGTGACCATGTCCGCGGGCAGCTGCGAC
TTGAAGTTGTTAAGGGTACTTCAAACCCTGATGGGTCTGTCCGAGAAGGA
AGCGGAACGGGAGGAGGACGATGAGGAGGAAATGGAGGGCGCGGGAGCAG
GCAGACTGCCAGGACACGGGGAGCAGGCAGAAGGAGGAGGGGAAGCGGGC
CCCTCGCCCTCCCTCCCTACCTCTACCTCGCCCTCCCTCCCTCCCTCTAC
TTCGCCCTCCCCCGCGTCCCACATGGGCGTGGTCCTCCTCCGAAAGCTGC
AGCTCGAGCCCCTGTGGGAGTCCTTGAGTGAGTGTCTGTCGGTGGTGGCG
GCCTTGGAAGGGATCTCGGAAGGGAGGGGAAGCAGCGGAGAAGGCGGGGC
GAGCCCGGGGGAGGCATTGGGGAGGGAGAGCACGGAGCCGTTGGACGGAG
AGGGGGGAGACGGCGAGGAAGGCGAGGGCGGGGGGCGGAAAGCCTCCTTG
ACCACGTCTTCCTCCATGGCAGGACTCTTGGCGAAGATGTTGCCTTTGCT
GGAGGCCTTCTTCTTGTGCAACGCCTGGGAGGTGATGACGGCGCACAAGA
AGAAACAGAAGGAGGAAGCCCGCAGGGAGTCGTGGGGCCCCCGGGAACGG
GAGAGAGAGCGCGCGAGGGAGCGTCGGCGGGCACAGCAACTGCAGGAGAG
GGAACGTCGAGGTGTGTAG
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protein sequence of rna2866

>rna2866-protein ID=rna2866-protein|Name=rna2866|organism=Nannochloropsis gaditana|type=polypeptide|length=103bp
MSLGAYSPMPSLLGLREQESLLPDTDQQVQEAQVPTGAPLAAPGPTANGL
RRLLPTALAPHSGRDAWEASSLFLRRGGCVLRLSSFPFPPSLLLAFPRPQ
LAS
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mRNA from alignment at CM002460.1:109158..109890+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2866 ID=rna2866|Name=rna2866|organism=Nannochloropsis gaditana|type=mRNA|length=733bp|location=Sequence derived from alignment at CM002460.1:109158..109890+ (Nannochloropsis gaditana)
GCAGCCTCCTCTTGAACGCCCTCATCCGTCAGAATCCGTCTCTGCTCGAC
AAGGGGCTATGTCCCTTGGTGCTTATTCCCCAATGCCGAGCCTTCTTGGA
CTTCGAGAACAAGAAAGCTTACTTCCGGACACAggtcctgccctcctcct
ccctcctcccccccccccaccactttccttccctccattctctTTCAATG
CACTCTCCCTTATTTCTCCCACTCTTCTACGTCCTGAACCTCACCACtgt
tttctccctccctccctccctccctccctaaacgccctcccgtcttttcc
tccctcactggCTCCCGCCCCTCAGATCAACAAGTTCAAGAAGCACAAGT
ACCGACGGGCGCACCCCTTGCAGCTCCGGGTCCGACGGCAAATGgtgaga
agaaggcgggagagaggaaggggcgtggaaggggaagagagggagggagg
gagggagggagggagtgaggaagggtAGGAGAGGAGCTGTCCTGCTCGCC
GCTCATCccatccatcctttcccgtAGGTTTACGACGACTCCTTCCAACA
GCTCTCGCTCCGCACAGCGGACGAGATGCGTGGGAAGCTTCAAGTCTCTT
TCtacggcgaggagggtgcgtgcttcgcctttcttctttcccgttccctc
cctccctgcttcttgctttccctcGTCCACAATTAGCCTCCTGAATGCCT
TCGATCATTTCCTCAATttcttgcctcccttcc
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Coding sequence (CDS) from alignment at CM002460.1:109158..109890+

>rna2866 ID=rna2866|Name=rna2866|organism=Nannochloropsis gaditana|type=CDS|length=936bp|location=Sequence derived from alignment at CM002460.1:109158..109890+ (Nannochloropsis gaditana)
ATGTCCCTTGGTGCTTATTCCCCAATGCCGAGCCTTCTTGGACTTCGAGA
ACAAGAAAGCTTACTTCCGGACACAgATCAACAAGTTCAAGAAGCACAAG
TACCGACGGGCGCACCCCTTGCAGCTCCGGGTCCGACGGCAAATGGTTTA
CGACGACTCCTTCCAACAGCTCTCGCTCCGCACAGCGGACGAGATGCGTG
GGAAGCTTCAAGTCTCTTTCtacggcgaggagggtgcgtgcttcgccttt
cttctttcccgttccctccctccctgcttcttgctttccctcGTCCACAA
TTAGCCTCCTGAATGTCCCTTGGTGCTTATTCCCCAATGCCGAGCCTTCT
TGGACTTCGAGAACAAGAAAGCTTACTTCCGGACACAgATCAACAAGTTC
AAGAAGCACAAGTACCGACGGGCGCACCCCTTGCAGCTCCGGGTCCGACG
GCAAATGGTTTACGACGACTCCTTCCAACAGCTCTCGCTCCGCACAGCGG
ACGAGATGCGTGGGAAGCTTCAAGTCTCTTTCtacggcgaggagggtgcg
tgcttcgcctttcttctttcccgttccctccctccctgcttcttgctttc
cctcGTCCACAATTAGCCTCCTGAATGTCCCTTGGTGCTTATTCCCCAAT
GCCGAGCCTTCTTGGACTTCGAGAACAAGAAAGCTTACTTCCGGACACAg
ATCAACAAGTTCAAGAAGCACAAGTACCGACGGGCGCACCCCTTGCAGCT
CCGGGTCCGACGGCAAATGGTTTACGACGACTCCTTCCAACAGCTCTCGC
TCCGCACAGCGGACGAGATGCGTGGGAAGCTTCAAGTCTCTTTCtacggc
gaggagggtgcgtgcttcgcctttcttctttcccgttccctccctccctg
cttcttgctttccctcGTCCACAATTAGCCTCCTGA
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Synonyms
Publications