rna2859, rna2859 (mRNA) Nannochloropsis gaditana

Overview
Namerna2859
Unique Namerna2859
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length417
Alignment locationCM002460.1:93766..94222 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_103048g1.4733.mrna
Orig protein idgnl|cribi|Naga_103048g1.4733
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:93766..94222 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_103048g1gene2735Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2859rna2859-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27822.1cds2851Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2859 ID=rna2859|Name=rna2859|organism=Nannochloropsis gaditana|type=mRNA|length=417bp
ATGGCGACCTTTCCTGGGTCTTCAAGCACGAAGAATGAGCCGCCTTCTTG
TATGCAGCCTTTGCTGCACGCCTTGGCGGACGTCGAGGCTCAGAAAGGGC
GACAGCGGCAGGACGAAGCACTCAGAGAAGTCCTTCGCCATTTCCAAGCG
TGGGAGTACGAAGAGAAGGCGGACCTGCAGCAGGACTGGCAACCTGCCTT
AGAGTTGCTTCATACCTCTCTCACCCATACCCTGGCCTCGCACCCGTCCC
TGGTCCTGGTTCCCTCTCCCAGCTCCCCCGTCGCCTCCCCCTCCGCCTTC
ACGGTCACCCCCCCGGGAAAAAAACGGGAGAAAGAGCCTTTTGGCTTTCC
CGTCCTCACCCCTTTGCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTTCCTTGA
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protein sequence of rna2859

>rna2859-protein ID=rna2859-protein|Name=rna2859|organism=Nannochloropsis gaditana|type=polypeptide|length=74bp
MSESHFLPPSLRWRFQNEITLTPPPSSSGPSSLPPSLPPSLVTLERKAVH
LDPRPLSLIFLDVLGDAIRGGRGR
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mRNA from alignment at CM002460.1:93766..94222+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2859 ID=rna2859|Name=rna2859|organism=Nannochloropsis gaditana|type=mRNA|length=457bp|location=Sequence derived from alignment at CM002460.1:93766..94222+ (Nannochloropsis gaditana)
ATGTCTGAgtcccacttcctccctccctccctccggtgGCGATTTCAAAA
TGAAATCACCCTcacaccccctccctcctcctcgggcccgtcctccctcc
cgccctccctcccgccctccctcgtgacCTTGGAGCGGAAAGCCGTCCAC
CTggaccctcgccctctgaGTCTGATTTTTCTGGACGTTTTGGGCGATGC
GATCCGTGGcggtaaggaaggagggagggagggcaagaaaaggaACGAGA
AGGAGCACATTCAGCAAGCAGAGATGCCAGTTTTGCTCatgctcttccct
ccctctctcctccctccctccctccctcccgcccgcctggCCCCAgaccc
tcctgccctcttccccagcttccccgcctccaaactcttcctcctcttcc
atcggCTCCGGCTGGCTCGGGCCTTCGCCTCGCCCGTTTCCAGGGCGCGG
GCGGTGA
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Coding sequence (CDS) from alignment at CM002460.1:93766..94222+

>rna2859 ID=rna2859|Name=rna2859|organism=Nannochloropsis gaditana|type=CDS|length=450bp|location=Sequence derived from alignment at CM002460.1:93766..94222+ (Nannochloropsis gaditana)
ATGTCTGAgtcccacttcctccctccctccctccggtgGCGATTTCAAAA
TGAAATCACCCTcacaccccctccctcctcctcgggcccgtcctccctcc
cgccctccctcccgccctccctcgtgacCTTGGAGCGGAAAGCCGTCCAC
CTggaccctcgccctctgaGTCTGATTTTTCTGGACGTTTTGGGCGATGC
GATCCGTGGcgGGCGCGGGCGGTGAATGTCTGAgtcccacttcctccctc
cctccctccggtgGCGATTTCAAAATGAAATCACCCTcacaccccctccc
tcctcctcgggcccgtcctccctcccgccctccctcccgccctccctcgt
gacCTTGGAGCGGAAAGCCGTCCACCTggaccctcgccctctgaGTCTGA
TTTTTCTGGACGTTTTGGGCGATGCGATCCGTGGcgGGCGCGGGCGGTGA
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Synonyms
Publications