rna2845, rna2845 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2845
Unique Name	rna2845
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2511
Alignment location	CM002460.1:50125..52761 +

Link to JBrowse

Properties


Property Name	Value
Product	ankyrin unc44
Orig transcript id	gnl\|cribi\|Naga_100074g6.800.mrna
Orig protein id	gnl\|cribi\|Naga_100074g6.800
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:50125..52761 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100074g6	gene2722	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2845	rna2845-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27842.1	cds2837	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:50125..52761+
coding sequence from alignment at CM002460.1:50125..52761+

mRNA sequence

>rna2845 ID=rna2845|Name=rna2845|organism=Nannochloropsis gaditana|type=mRNA|length=2511bp
CGGGCATGTTTTTCAAAACATCCGATTTGATCCACCCGATACATTTCTTC
CCTAATGGCTGTACTATGCGCAACCGAGGAACGGGCATGGAATGGGTATA
AAGCGGAAGGAAATACAAAGTCTTGCCGGCGTTCGCATGGCAAGCGGTGT
TTCGCCCTGTACTCAACTTCAATCGCATCTTTGCGTTTAGCATGTGTTAA
AAACGGTTCAACATTCGCCCGCCTTGTATATTTCCATGAAATCTACCGAC
ATTCACAGCGACCATGGATGTCGCAGACGAAAACAGACAAGGAGACAATA
CCCCCACAAACGCGAGCAGCAGTCTTCGAAGCAGCCGAAGTGGCAGTATG
GACGGCGGTAGCAACTCCCACGATGATAATAGTGAAGAAGCCATCCTTCC
ACTCCCACCACAAGCTCCATCGACCCGTAGGCTGGTTCTAAACACCCGAC
AAAATTCAATTCACACGTATGAAAGCGAAAGGCAAGCCTCAAGATTGGAA
GAGGGAGGAGGCGAAGGAGGAGATGGTGGAGAGGGAGGGGAAGGAGGAAG
CACCGGCAGAAAAGCAACTACCCCGACACAAAAACTGGCGTCCTTTTTCA
GTATCGGAGAGGGAGGAGGGTTGGGTTCACTTTCGCCTCGCTCCCGGCTT
TCTCGTCTATCCCCCAGAGGGTCCTTTCGGATCTCTCCTCGCAATTTTTT
AAAGTTGAACAAGCGGCGGCCGATGGCGCTCAAAACCGAGGGCTCGTCTT
TCGAGAACATTCCCCCTCCTCCTGGCTTGACCTCTCAACACACAAAACTT
ATCAGTGAGAACAATAGTTATTGCCGATGGGCGGAGGAAGAAGCCCGGTA
CACGGATCCCGAGCAGCTCGTGTCGCCCTGGTCGTCCCTGAACGTGGCCA
TCACTCTGGGTGCCTTCCTCTTTCAGCTGACCAGCACCTTCTTCTCCGTT
CCTCTCGCCTTCTACGTGATCAAGAACCTGGGCATGAACGCAGCGGCCAT
CAATGTGGCACAACAAATGACGCAACTCCCTCAAGCCCTACAAATACCCA
TCGGCCTTCTCACGGATTGCGTGCCCATCAAAAAGCGACGGCGCAAGTAC
TATGTTCTACTCGGCTGGCTCCTCCATATTGCTTCCATGACTGCGCTAGC
CATAGTCGGCGAACCAGATATCTCCTCCCTCGTTGGACTTATCTTTCTAT
CCTTCCTAGGCGGACAAATTATGGACCTGTCCCAACGGGCCCTGATCGTC
CAGCGTTCTCGACACGAAAACCTGGAGCGAAAGGGGGTGTTGATGGTGAC
CGTGAACCTGGCATGGACGTGGGGCAACATGCTGGGCTTTGTGCTCGGCA
CCTTTTGCTACGAGAGCAACTTTCAAAACGGGGGCGGAATGAGTCTAGCC
AATATCGCGACTTTCAACGCCGCGGTAGGCGTGGCTTTCTTGCCATTCCT
GTATACACTCTACGACCCCAAGATCAACTCGATCACCAAAACGCGGCCCA
TTCGGGAGGAAATGGCGGACGTATGGTCGATGGTGCAGCGGAAGAGCGTC
CTCATGCCTATGCTTTTCGTCGGGATTTTCCAAATCTTTTGGGTTCCGAA
CAGTGCCTGGTCTGTCTTTTTGATCGAAGGACTGAACTTCTCAGAGTGGC
ATATCGGCCTGATGGGTCTCCTCGGAAGTGTCCTGGGTACGGGAGGGAGG
CAGGAATGGAGGGAGTGTAGAACCAAAGGGGGAAGTTTTTCAGACTCTGC
TCGGGTTTACCAGACCACTTTTAAGACTTGTCCTTCATATAGCCATTCCT
CGGTGGCTTCCCTTTCCTCCCCCCATCTCCCTGTCGCTTTACGTGGTGTA
GGTGCATGCGGGGCGGCTCTCTACCGCCTTTGTCTTATGAAGACGAATTG
GCGCAAGATCTTCGTCTTCACCTCTTTTATCATGGCCGGAATGAATAGCC
TCACGCTCCTCCTCGTATTTCGTGTCAATTTACGGGTACCGCCATCATCT
CTCCCTCGATTCCTCCCTCGCTTTCTTTGTCTCCCTCTCGTCACATCCAC
TCCTTGGTCGCCTCTCTTTTCCCTCTGAATCCTTGTCCAGCCATCTATTC
TTCTTCGCTCTCTCTGGGCTCGGATTTCATTTTTACGGCCGTCCCCTCCT
TTTTTCTCTTCTCGCCTTTTCTTCCTCCTTCCGTTCTTTTTCCACACAAA
GTGGGGCATTTCCGACTACTTTTTTGCGATGGGCGACAATTTAATCGAGT
CGATGGTTGATGGTTTCCATATCATGCCGATAAGTAAGGAGAGAGGGGAA
ATGGGCGAAAGCGAGAAGAGGAAGAAGGGAGGGGGGACATTATTGGAGTC
ACAGACACTCCCCTTCATCAGATACAGAATTGATCGCAGAGCAAATTGCG
AGGTCAACATCTTCTTCTTCGTAACCTTCCCTTGGTATCTGAACCGAATC
ATCATGCTCATGCTGAACTCGCCATTCCCCCTCCGGTCCCTTTCGTTCTC
TTTCCTATTCC

protein sequence of rna2845

>rna2845-protein ID=rna2845-protein|Name=rna2845|organism=Nannochloropsis gaditana|type=polypeptide|length=667bp
MNGAGNCINPSPAREEEIPSFRLSQPNSSPKNPRTSQRLKCMLAELVLQA
KLECNSNYSVSKEDNEGIEEEEGDHNLGGLTEETIERLCKSEYANDVLRI
CQKMNGSSLNTNGGRESIGSPLENFKGTGSTIFSDIDDRQDLSNSTLTIT
TKGGSGLPMKRSTSERVSNIETFLTEDRGRSSSEGVTKSFPSDPSSSRRS
STSSSCLSSLCPKPEEFSVSRMTSAIEEGNIDRVIHLLGQYRRLPTPSTT
NNSPDRRPIPNFFHYALTLRQEGVALSLLQHEGSSSPMIDAKDPQGRTSL
MLAVIYNLLGVVKALMLPPSTLATASSSPSSSNLSSSSASAPRSSLCLLS
RTRQRRRSLTPLDLRAVSIQGHRATCYAALNGHIDILEFLLTHMSGGDSS
SNFVTCIQSQSAPCGHALLHHAVQGNHYRTIKWLVQKGANVNVPTKGSAF
EEGHKKWTPLHCAIHAFLEAKKEAAIIREEAGRAGPLGGRDRGPGNRGGG
LFSSPPFKTLTPTATLSPAGHLLQSPSLRASFSFSSPASPSSFSSPARTP
SQRRENDREESEDKEKKALKIIRWLIEEGKADMIVKDVHGRTPYDIFIGS
TLYQRENSGSYNSNEMSPGRPGRRRDGGREITSMKRVGKYLVLMQKKQRA
VDAAMGELFDGENWDIG

mRNA from alignment at CM002460.1:50125..52761+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2845 ID=rna2845|Name=rna2845|organism=Nannochloropsis gaditana|type=mRNA|length=2637bp|location=Sequence derived from alignment at CM002460.1:50125..52761+ (Nannochloropsis gaditana)
AGGGTCTGATATTTCAAAGGGAATGCAAATATGAATGGCGCTGGAAATTG
TATAAATCCATCCCCAgcgcgggaagaagagatacCTTCTTTTCGGCTGT
CCCAGCCCAACAGTTCCCCCAAAAATCCACGTACCTCTCAACGATTGAAA
TGTATGCTAGCAGAGCTAGTCCTACAAGCCAAATTAGAATGCAATAGCAA
CTACAGTgtgagcaaggaggacaatgAAGGCatagaagaagaggaagggg
accATAACCTAGGTGGGCTGACGGAGGAGACAATAGAGCGACTTTGCAAA
TCTGAATATGCTAACGATGTGCTCAGAATATGTCAAAAGATGAATGGAAG
CAGTCTAAATACTAATGGTGGCAGAGAAAGCATTGGCTCGCCGTTAGAAA
ATTTTAAAGGGACAGGAAGCACTATCTTTTCGGATATCGATGATCGGCAG
GACTTATCGAACAGTACCCTCACCATCACTACAAAGGGTGGTAGTGGCTT
GCCAATGAAACGCAGTACGAGCGAGCGAGTCTCAAATATAGAAACTTTTC
TGACAGAAGATAGAGGCCGCAGCAGTAGTGAAGGTGTCACCAAgtctttt
ccctccgacccttcctcctcccggcgctcctccacctcgtcctcttgCCT
TTCTTCACTTTGTCCTAAGCCTGAAGAATTTTCCGTCTCCCGCATGACAT
CTGCAATTGAAGAAGGAAATATCGATCGTGTTATTCACCTTCTTGGACAA
TACCGCCGTCTACCTACGCCTTCTACGACCAACAACAGTCCAGACCGTCG
TCCCATTCCTAATTTTTTCCACTACGCTCTGACGCTTCGTCAAGAAGGGG
TAGCACTCTCTCTATTGCAGCATGAAggttcgtcctcccccatgaTTGAT
GCCAAGGATCCACAAGGGAGGACCAGTCTCATGCTGGCCGTCATCTACAA
TCTTCTTGGGGTCGTCAAGGCACTGATGTTACCCCCATCCACATTAGCGA
CTGCCTCCTCGAGTCCATCCTCGTCCAAcctatcttcctcctccgcatct
gctccccgctcctccctctgcctcctttcccgcacCCGTCAGCGCCGCCG
GAGCCTCACACCTCTGGACCTACGGGCGGTCTCCATCCAAGGACATCGAG
CAACATGCTACGCGGCGCTCAACGGTCACATCGATATTTTGGAATTTTTG
CTCACGCACATGAGCGGCGGAGACAGCTCTTCGAACTTTGTCACCTGCAT
TCAATCTCAGTCTGCGCCTTGCGGTCATGCCTTGCTGCATCATGCTGTAC
AAGGTatactttctttcccccatcATTCTATCAAACTCTGTTCTTCTGCT
GTGCCGTATTGAATCCCTTGTGCTTATCTTCTCGTGCGATACGGGCTCTG
GCTCTGCCGCTCCCGTCTTTCAAGATTCTTATTGCTACCTTcgcattctt
tccctccttttgtaACCTCCGCATGTAAGGCTATAAAAAAGTGTACAGTA
TAAGTGAATGGTATCCTATCTTGGTCAATACGCAAGCCCTATTTTGACCA
TTCCAATCCTTCTTTTGTGCCGCTTTTTCTCCACAAATGGGCATCGCTTT
TTATCAGCAAGCGATCTACGCCTTTCTTAATCCtttgctcttccttccta
caCATCTTTCCTAACCTTTAGGCAATCACTACCGTACTATCAAATGGCTA
GTACAAAAAGGTGCAAATGTGAACGTGCCGACCAAGGGCAGTGCTTTTGA
GGAAGGGCACAAGAAATGGACTCCATTACATTGTGCGATACACGCTTTCT
TGgaagcaaagaaagaagcggCGATAATCCGGGAAGAAGCTGGAAGAGCT
GGGCCATtaggaggaagagatagAGGACCTGGGAATAGGGGAGGCGGATt
attctcctccccgccattCAAGACCTTGACACCTACGGCAACGTTATCTC
CGGCTGGTCATCTCCTTCAATCGCCCTCTCTTcgtgcctccttttctttt
tcttctccagcatctccttcttcattcTCATCGCCTGCCAGAACGCCGTC
GCAGAGACGAGAgaacgacagggaggaaagtgaggatAAGGAGAAAAAAG
CTTTAAAAATAATCAGATGGTTGATCGAGGAAGGTAAGGCTGACATGATT
GTTAAAGATGTGCACGGTAGGACTCCTTACGATATTTTTATCGGAAGTAC
GTTGTACCAACGTGAAAATTCCGGCAGTTACAATAGCAATGAGATGAGTC
CAGGCCgaccgggaaggaggagagatggaggaagggaaatcACGTCTATG
AAGCGGGTGGGAAAATATCTCGTACTCATGCAAAAGAAACAGCGAGCAGT
CGACGCGGCGATGGGTGAGCTGTTCGATGGGGAGAACTGGGATATCGGGT
AGTCAAGAGAGTATCGGAGAAAATTGAGGATTGAGATGCCGGAATCGAGA
CACTGTCGGATTTTAAGGAATGGCTTACAAAATACTTTTTTCTagaagga
aaaatgcagAAATTTGGAAATAATAGTTTTGTGCGTATCAAGTAAGCAAA
CAGATTCACTTTTTTTGGTGAACAAACTAGTCTTGGTGATTAAAAGATAA
CAATTTCCGACTTTATTATTATATATCGACTTGTAAA

Coding sequence (CDS) from alignment at CM002460.1:50125..52761+

>rna2845 ID=rna2845|Name=rna2845|organism=Nannochloropsis gaditana|type=CDS|length=4008bp|location=Sequence derived from alignment at CM002460.1:50125..52761+ (Nannochloropsis gaditana)
ATGAATGGCGCTGGAAATTGTATAAATCCATCCCCAgcgcgggaagaaga
gatacCTTCTTTTCGGCTGTCCCAGCCCAACAGTTCCCCCAAAAATCCAC
GTACCTCTCAACGATTGAAATGTATGCTAGCAGAGCTAGTCCTACAAGCC
AAATTAGAATGCAATAGCAACTACAGTgtgagcaaggaggacaatgAAGG
CatagaagaagaggaaggggaccATAACCTAGGTGGGCTGACGGAGGAGA
CAATAGAGCGACTTTGCAAATCTGAATATGCTAACGATGTGCTCAGAATA
TGTCAAAAGATGAATGGAAGCAGTCTAAATACTAATGGTGGCAGAGAAAG
CATTGGCTCGCCGTTAGAAAATTTTAAAGGGACAGGAAGCACTATCTTTT
CGGATATCGATGATCGGCAGGACTTATCGAACAGTACCCTCACCATCACT
ACAAAGGGTGGTAGTGGCTTGCCAATGAAACGCAGTACGAGCGAGCGAGT
CTCAAATATAGAAACTTTTCTGACAGAAGATAGAGGCCGCAGCAGTAGTG
AAGGTGTCACCAAgtcttttccctccgacccttcctcctcccggcgctcc
tccacctcgtcctcttgCCTTTCTTCACTTTGTCCTAAGCCTGAAGAATT
TTCCGTCTCCCGCATGACATCTGCAATTGAAGAAGGAAATATCGATCGTG
TTATTCACCTTCTTGGACAATACCGCCGTCTACCTACGCCTTCTACGACC
AACAACAGTCCAGACCGTCGTCCCATTCCTAATTTTTTCCACTACGCTCT
GACGCTTCGTCAAGAAGGGGTAGCACTCTCTCTATTGCAGCATGAAggtt
cgtcctcccccatgaTTGATGCCAAGGATCCACAAGGGAGGACCAGTCTC
ATGCTGGCCGTCATCTACAATCTTCTTGGGGTCGTCAAGGCACTGATGTT
ACCCCCATCCACATTAGCGACTGCCTCCTCGAGTCCATCCTCGTCCAAcc
tatcttcctcctccgcatctgctccccgctcctccctctgcctcctttcc
cgcacCCGTCAGCGCCGCCGGAGCCTCACACCTCTGGACCTACGGGCGGT
CTCCATCCAAGGACATCGAGCAACATGCTACGCGGCGCTCAACGGTCACA
TCGATATTTTGGAATTTTTGCTCACGCACATGAGCGGCGGAGACAGCTCT
TCGAACTTTGTCACCTGCATTCAATCTCAGTCTGCGCCTTGCGGTCATGC
CTTGCTGCATCATGCTGTACAAGGCAATCACTACCGTACTATCAAATGGC
TAGTACAAAAAGGTGCAAATGTGAACGTGCCGACCAAGGGCAGTGCTTTT
GAGGAAGGGCACAAGAAATGGACTCCATTACATTGTGCGATACACGCTTT
CTTGgaagcaaagaaagaagcggCGATAATCCGGGAAGAAGCTGGAAGAG
CTGGGCCATtaggaggaagagatagAGGACCTGGGAATAGGGGAGGCGGA
TtattctcctccccgccattCAAGACCTTGACACCTACGGCAACGTTATC
TCCGGCTGGTCATCTCCTTCAATCGCCCTCTCTTcgtgcctccttttctt
tttcttctccagcatctccttcttcattcTCATCGCCTGCCAGAACGCCG
TCGCAGAGACGAGAgaacgacagggaggaaagtgaggatAAGGAGAAAAA
AGCTTTAAAAATAATCAGATGGTTGATCGAGGAAGGTAAGGCTGACATGA
TTGTTAAAGATGTGCACGGTAGGACTCCTTACGATATTTTTATCGGAAGT
ACGTTGTACCAACGTGAAAATTCCGGCAGTTACAATAGCAATGAGATGAG
TCCAGGCCgaccgggaaggaggagagatggaggaagggaaatcACGTCTA
TGAAGCGGGTGGGAAAATATCTCGTACTCATGCAAAAGAAACAGCGAGCA
GTCGACGCGGCGATGGGTGAGCTGTTCGATGGGGAGAACTGGGATATCGG
GTAGATGAATGGCGCTGGAAATTGTATAAATCCATCCCCAgcgcgggaag
aagagatacCTTCTTTTCGGCTGTCCCAGCCCAACAGTTCCCCCAAAAAT
CCACGTACCTCTCAACGATTGAAATGTATGCTAGCAGAGCTAGTCCTACA
AGCCAAATTAGAATGCAATAGCAACTACAGTgtgagcaaggaggacaatg
AAGGCatagaagaagaggaaggggaccATAACCTAGGTGGGCTGACGGAG
GAGACAATAGAGCGACTTTGCAAATCTGAATATGCTAACGATGTGCTCAG
AATATGTCAAAAGATGAATGGAAGCAGTCTAAATACTAATGGTGGCAGAG
AAAGCATTGGCTCGCCGTTAGAAAATTTTAAAGGGACAGGAAGCACTATC
TTTTCGGATATCGATGATCGGCAGGACTTATCGAACAGTACCCTCACCAT
CACTACAAAGGGTGGTAGTGGCTTGCCAATGAAACGCAGTACGAGCGAGC
GAGTCTCAAATATAGAAACTTTTCTGACAGAAGATAGAGGCCGCAGCAGT
AGTGAAGGTGTCACCAAgtcttttccctccgacccttcctcctcccggcg
ctcctccacctcgtcctcttgCCTTTCTTCACTTTGTCCTAAGCCTGAAG
AATTTTCCGTCTCCCGCATGACATCTGCAATTGAAGAAGGAAATATCGAT
CGTGTTATTCACCTTCTTGGACAATACCGCCGTCTACCTACGCCTTCTAC
GACCAACAACAGTCCAGACCGTCGTCCCATTCCTAATTTTTTCCACTACG
CTCTGACGCTTCGTCAAGAAGGGGTAGCACTCTCTCTATTGCAGCATGAA
ggttcgtcctcccccatgaTTGATGCCAAGGATCCACAAGGGAGGACCAG
TCTCATGCTGGCCGTCATCTACAATCTTCTTGGGGTCGTCAAGGCACTGA
TGTTACCCCCATCCACATTAGCGACTGCCTCCTCGAGTCCATCCTCGTCC
AAcctatcttcctcctccgcatctgctccccgctcctccctctgcctcct
ttcccgcacCCGTCAGCGCCGCCGGAGCCTCACACCTCTGGACCTACGGG
CGGTCTCCATCCAAGGACATCGAGCAACATGCTACGCGGCGCTCAACGGT
CACATCGATATTTTGGAATTTTTGCTCACGCACATGAGCGGCGGAGACAG
CTCTTCGAACTTTGTCACCTGCATTCAATCTCAGTCTGCGCCTTGCGGTC
ATGCCTTGCTGCATCATGCTGTACAAGGCAATCACTACCGTACTATCAAA
TGGCTAGTACAAAAAGGTGCAAATGTGAACGTGCCGACCAAGGGCAGTGC
TTTTGAGGAAGGGCACAAGAAATGGACTCCATTACATTGTGCGATACACG
CTTTCTTGgaagcaaagaaagaagcggCGATAATCCGGGAAGAAGCTGGA
AGAGCTGGGCCATtaggaggaagagatagAGGACCTGGGAATAGGGGAGG
CGGATtattctcctccccgccattCAAGACCTTGACACCTACGGCAACGT
TATCTCCGGCTGGTCATCTCCTTCAATCGCCCTCTCTTcgtgcctccttt
tctttttcttctccagcatctccttcttcattcTCATCGCCTGCCAGAAC
GCCGTCGCAGAGACGAGAgaacgacagggaggaaagtgaggatAAGGAGA
AAAAAGCTTTAAAAATAATCAGATGGTTGATCGAGGAAGGTAAGGCTGAC
ATGATTGTTAAAGATGTGCACGGTAGGACTCCTTACGATATTTTTATCGG
AAGTACGTTGTACCAACGTGAAAATTCCGGCAGTTACAATAGCAATGAGA
TGAGTCCAGGCCgaccgggaaggaggagagatggaggaagggaaatcACG
TCTATGAAGCGGGTGGGAAAATATCTCGTACTCATGCAAAAGAAACAGCG
AGCAGTCGACGCGGCGATGGGTGAGCTGTTCGATGGGGAGAACTGGGATA
TCGGGTAG

Synonyms

Publications