rna2842, rna2842 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2842
Unique Name	rna2842
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2527
Alignment location	CM002460.1:36696..38094 -

Link to JBrowse

Properties


Property Name	Value
Product	oxidoreductase nad-binding domain-containing protein 1 precursor
Orig transcript id	gnl\|cribi\|Naga_100074g4.796.mrna
Orig protein id	gnl\|cribi\|Naga_100074g4.796
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:36696..38094 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100074g4	gene2720	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27838.1	cds2834	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2842	rna2842-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:36696..38094-
coding sequence from alignment at CM002460.1:36696..38094-

mRNA sequence

>rna2842 ID=rna2842|Name=rna2842|organism=Nannochloropsis gaditana|type=mRNA|length=2527bp
GTTTCTCGGTGCTGCTAACATGTCTGCCGCCCCTCCGAAAAACTAATCAG
GCGGTTTCACGTTTGGATACGGGCTGACAGGTTGCTTTGAAGCTAATATT
ATTTTTCCCCTCTACCTATCTGTGGTTATAGGACGCGTAAGTACCCCGAA
AAGTAGCGAGTTTCACTTCGGATGTCGCATCAACCAATCCTGCCCCCCCT
TAATGACCCCGCTGTAGCAGCACTCAAACCGGTTACACAATGCTACAAGG
ATCTACTAGCCTCTCTTCAGGTCACGTGTCTTCTATACACACTTCAAGGA
CATGCCTTGCGCACTTCTATCGAAGCACAGACGATACCGATAGCCGATGT
TGCCACGCTGCTTGAGTCCTGCTCAACTCTACAGGACCTGATATCTTTCG
CCTCGACTTCATTCCCATGCCGTAATGCAGATAATAAGGATGGTCGTTGC
ACAAATCAAACAAATGAGAGCATGACATCCGCATCGCGAATGATGGGAGC
CCTCTCTCTCCGCGTTGCTCCCTCGCCTCATCCATCCGCATCATTTGTGC
ACCCAACACCTCGAGACGACTGTCAAAGACCCACCTGCGCCCACAATTCC
CACGCACCCCTTCCTACCAGTATCTCCATCGGCTCTTTACCGGACTCTGT
GCTCATTAATGTTATATCCTACCTTACCGGCGGAGCGCGGGAGACTACGG
ACCCAGCAGGTGGCCATGTCAGCCATGCATTTCACAACCTTTCACACAAA
GAAATCCGCGTTCAGCTAGGCGACATTCGAGCTGTCGCTTTGCGCTGGTC
GGTGGTGGGAACCGCGGACGAGCTATGGGAGCCTGTTGTCCTCGCCCTCT
GGCCTGTGACCCAAAGCCTTTCTCCCTCCCTCCTCCCCTCCCTCTCTCCC
TCCATGTGCCGGTCGTCGCTTGAAGGGCCCAGCGCCAACGGTTCTGCTTC
TCTAGGATTGTATCCCTCGTGGCGTTTTCATGGCACCCATTCCTTCCATG
AGTTATGCCTGCGGCGCGGAAGAGCGATCGTAAACCCGGGCCTGTGCCTA
GTGACCCCTCAGTGGTCGGCAAGGTACCGTCTCCACTTCCACATTTTCGA
AGAGCGTCATAGCATCCCTCTCTTCTCGGGCGAAGGTCCGCTGGTCTGTC
AAGAGTGGCAGAACCATCACGAACATCGTACCATCCTACGCTTGGGCCCG
GGGGCGGCGGTAGTGACCACTACCTTTTCCGCCAGTGGCTGTGGAGGAGG
CGTGGGGGGAGGAGACGTAGAAGGGGATGGAAGTGCAGGGGGCAGGGGCG
GCAGGCGCCAGAGGGTGGAGCGGTGAGTCGACTTCGGCGTCTTGGGCTGT
AATATCTACTCTGCTTGCTAGATTGAAGATTATTGTTGTGTTGTTGAGAT
ATGAACCCATCGGCCCTTTGATTTGTCGAGATTGAAGAGCCTTTCACGAC
AGTTGGATGCTCGACTTTTGCCACATCGTTTGAGACTCCCTGGCATATCT
ACTCAATTACTGTCTCACTTCTACATTACCTGCCTCCCTTCCTCTCTTCC
TATCTCCCGCCTTCCTACCCTTTCTTTCTCTCTTTCTAGTTTTTTGACCT
ATGGAGTCGCAATCCGCGTGACCGTTATAGAGGCAGCTTCAGGAAGGGAG
GCGCTCATCTACCAGTCTTCGTCCCGGACAGATCGACATTGCCAAGAAGC
CGCCCCAGGCTGGCCCGTACCCCCTCACTCCATCGCAGTGACCGACCGCG
CCGAAAGCTGGATGTCTGGAAAAGGAGGGGGGGCGTCCCTCCCGCCATTG
CGCTCCCTGTTTGACTTCACCGTCATTCCTGTGGGCATGACGCCGTCGGA
GGGAGGGCGAGGCTCTGGCCGGGAAGGAGGGTGGGAACGGCGGTGCCTGT
ACAAAGTGCATGCCGCGCGGGTTGACCCGCCTGTCAACACGATTGCTCAC
ACAGGCATCGTCGGGTTGGTGTTTCTCGGCCACGTCCATGAAGTTGGCCT
TCTCCTCGCGTCTTTGCAGTGGGCGTAATCGACCCGCCTCCTCTCTTCGT
CTGATAGGACCCCGCAGGGTGAACTGCCTCTGGATCCGATTTTTTTTCGG
ACTGAGGATAAGGCTGGGGTTATGGCTGGCGATTTCGATGATTGTATTGA
TCGGCCTTGTTTAAAAAATTCATGCCGTAAAAATGAGGTTACATAAAAGG
TGCCTCACATGTCAAAATCAGGGTGAAGAGAGAGCAATGTATGCCGCAAA
GTAACCTCTTTGTCTCGAACCTTAATTGTTCGATCTCCTTCAGGCAATGC
GTCCCTTCCACCATTCCTTTGCCACCACGTGCTCCAAGTTTTAGTATACA
TACACATACATTCTGGTCCTCTATCTACCACCATTTCTCCGCCACCACCT
GCGACGCCTCCAAGCAGCACCTTCCTTCCCGCGCTCCTTCGGCTTTTAGC
TTTCCCAGCAGCATGTCCTCCACGTCGTCGATCATCTTCGCCGGTCCACA
AACGTACACTAGGGCCTTTTTTCGTCC

protein sequence of rna2842

>rna2842-protein ID=rna2842-protein|Name=rna2842|organism=Nannochloropsis gaditana|type=polypeptide|length=408bp
MTFLMRGSSPCMKDITSLSSSHSELSNVLLSPPGMQRRAVLKPVLASSTY
PSRHLRHCSCCHHTSSTPSLHSSSPAPAENRPSASLPDDPSITHACVTGI
HTLSPTVRQLDLRLLCNKELPARDPFSFVAGQWVDFFVPSLPHCGGFSMV
SPPEILPRLSLAIKGSSLSRSLHARWAHSTVAEGDVVGLRVGGGFHFQMT
EAHWVEGTRLTLFAGGVGINPMMSILAHVVSWIERKEVKSKEGREEGERL
TGEGALDDRIARGLGVEENCAVRVQAPFRVALVYSAATRAELLFEEQIQK
WAEQHSEWFTVLFIVTREKGEGKEREGGGEGGQLRYREGSRMDEKVIWDA
VEGGEGIRGRKKALVYVCGPAKMIDDVEDMLLGKLKAEGAREGRCCLEAS
QVVAEKWW

mRNA from alignment at CM002460.1:36696..38094-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2842 ID=rna2842|Name=rna2842|organism=Nannochloropsis gaditana|type=mRNA|length=1399bp|location=Sequence derived from alignment at CM002460.1:36696..38094- (Nannochloropsis gaditana)
CCCTACCCCCCTCATGTCCTTGTCTAGCTCCAACAGCCAAGACTTGACGA
ATCACCCATGACTTTCCTCATGCGAGGGTCTTCTCCTTGTATGAAAGATA
TAACATCCTTATCGTCCTCACATTCAGAGTTATCCAATGTTCTTTTATCC
CCTCCAGGCATGCAGCGGCGCGCAGTCCTCAAGCCTGTCCTAGCCTCCTC
TACTTATCCTTCTCGACACCTCCGTCACTGCTCCTGCTGCCACCACACGT
CCTCGACCCCCTCGTTGCACTCATCCTCGCCGGCCCCTGCGGAGAATCGT
CCTTCCGCATCCCTTCCTGACGATCCCTCCATCACGCATGCCTGCGTCAC
GGGCATACACACCCTCAGCCCCACTGTGCGTCAACTCGACCTACGTCTCC
TGTGTAACAAGGAACTCCCAGCTCGGGATCCTTTCTCTTTTGTGGCAGGA
CAGTGGGTAGATTTTTTTGTCCCCTCCCTGCCGCACTGCGGCGGCTTTTC
CATGGTCTCTCCCCCGGAAATCCTACCTCGTCTCTCTCTCGCTATCAAAG
GCTCTTCCCTCTCCCGCTCCCTACATGCGCGGTGGGCCCACAGTACCGTG
GCCGAAGGAGACGTGGTGGGACTTCGGGTTGGGGGAGGCTTCCATTTTCA
AATGACGGAGGCTCATTGGGTAGAAGGAACGAGGCTGACTTTGTTTGCGG
GGGGCGTAGGAATCAATCCGATGATGAGCATCTTGGCGCACGTAGTCTCG
TGGATCGAGCGCAAGGAGGTGAAAAGCAAGGAGGGACGGGAGGAGGGAGA
GAGATTGACCGGAGAGGGTGCGCTGGACGATAGGATTGCCAGAGGTCTGG
GGGTTGAGGAAAATTGCGCTGTAAGAGTCCAGGCGCCCTTCCGCGTCGCT
CTAGTCTACAGTGCAGCGACGCGGGCGGAGCTGCTGTTCGAGGAACAAAT
TCAAAAGTGGGCAGAGCAGCATTCGGAATGGTTCACGGTCTTGTTTATCG
TGACGCGAGAGAAAGGAGAGGGAAAGGAGAGAGAGGGAGGGGGGGAGGGA
GGGCAGTTGAGGTATAGGGAGGGATCTAGGATGGACGAAAAGGTAATATG
GGACGCAGTTGAGGGTGGCGAAGGTATAAGAGGACGAAAAAAGGCCCTAG
TGTACGTTTGTGGACCGGCGAAGATGATCGACGACGTGGAGGACATGCTG
CTGGGAAAGCTAAAAGCCGAAGGAGCGCGGGAAGGAAGGTGCTGCTTGGA
GGCGTCGCAGGTGGTGGCGGAGAAATGGTGGTAGATAGAGGACCAGAATG
TATGTGTATGTATACTAAAACTTGGAGCACGTGGTGGCAAAGGAATGGTG
GAAGGGACGCATTGCCTGAAGGAGATCGAACAATTAAGGTTCGAGACAA

Coding sequence (CDS) from alignment at CM002460.1:36696..38094-

>rna2842 ID=rna2842|Name=rna2842|organism=Nannochloropsis gaditana|type=CDS|length=1227bp|location=Sequence derived from alignment at CM002460.1:36696..38094- (Nannochloropsis gaditana)
ATGACTTTCCTCATGCGAGGGTCTTCTCCTTGTATGAAAGATATAACATC
CTTATCGTCCTCACATTCAGAGTTATCCAATGTTCTTTTATCCCCTCCAG
GCATGCAGCGGCGCGCAGTCCTCAAGCCTGTCCTAGCCTCCTCTACTTAT
CCTTCTCGACACCTCCGTCACTGCTCCTGCTGCCACCACACGTCCTCGAC
CCCCTCGTTGCACTCATCCTCGCCGGCCCCTGCGGAGAATCGTCCTTCCG
CATCCCTTCCTGACGATCCCTCCATCACGCATGCCTGCGTCACGGGCATA
CACACCCTCAGCCCCACTGTGCGTCAACTCGACCTACGTCTCCTGTGTAA
CAAGGAACTCCCAGCTCGGGATCCTTTCTCTTTTGTGGCAGGACAGTGGG
TAGATTTTTTTGTCCCCTCCCTGCCGCACTGCGGCGGCTTTTCCATGGTC
TCTCCCCCGGAAATCCTACCTCGTCTCTCTCTCGCTATCAAAGGCTCTTC
CCTCTCCCGCTCCCTACATGCGCGGTGGGCCCACAGTACCGTGGCCGAAG
GAGACGTGGTGGGACTTCGGGTTGGGGGAGGCTTCCATTTTCAAATGACG
GAGGCTCATTGGGTAGAAGGAACGAGGCTGACTTTGTTTGCGGGGGGCGT
AGGAATCAATCCGATGATGAGCATCTTGGCGCACGTAGTCTCGTGGATCG
AGCGCAAGGAGGTGAAAAGCAAGGAGGGACGGGAGGAGGGAGAGAGATTG
ACCGGAGAGGGTGCGCTGGACGATAGGATTGCCAGAGGTCTGGGGGTTGA
GGAAAATTGCGCTGTAAGAGTCCAGGCGCCCTTCCGCGTCGCTCTAGTCT
ACAGTGCAGCGACGCGGGCGGAGCTGCTGTTCGAGGAACAAATTCAAAAG
TGGGCAGAGCAGCATTCGGAATGGTTCACGGTCTTGTTTATCGTGACGCG
AGAGAAAGGAGAGGGAAAGGAGAGAGAGGGAGGGGGGGAGGGAGGGCAGT
TGAGGTATAGGGAGGGATCTAGGATGGACGAAAAGGTAATATGGGACGCA
GTTGAGGGTGGCGAAGGTATAAGAGGACGAAAAAAGGCCCTAGTGTACGT
TTGTGGACCGGCGAAGATGATCGACGACGTGGAGGACATGCTGCTGGGAA
AGCTAAAAGCCGAAGGAGCGCGGGAAGGAAGGTGCTGCTTGGAGGCGTCG
CAGGTGGTGGCGGAGAAATGGTGGTAG

Synonyms

Publications