rna2841, rna2841 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2841
Unique Name	rna2841
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2840
Alignment location	CM002460.1:33800..36963 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100074g3.784.mrna
Orig protein id	gnl\|cribi\|Naga_100074g3.784
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:33800..36963 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100074g3	gene2719	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2841	rna2841-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27826.1	cds2833	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:33800..36963+
coding sequence from alignment at CM002460.1:33800..36963+

mRNA sequence

>rna2841 ID=rna2841|Name=rna2841|organism=Nannochloropsis gaditana|type=mRNA|length=2840bp
CAGCTCATCGAGTTGTGGCCGTGTGGTTGCACTTTATTGAATTCATGAGT
GACCGGCTTAATCCACCTCCGGGGCCGTTGCCTGGAAGTAGTACGTCATC
ATCCTTCTTCGTTTCTCGGTGCTGCTAACATGTCTGCCGCCCCTCCGAAA
AACTAATCAGGCGGTTTCACGTTTGGATACGGGCTGACAGGTTGCTTTGA
AGCTAATATTATTTTTCCCCTCTACCTATCTGTGGTTATAGGACGCGTAA
GTACCCCGAAAAGTAGCGAGTTTCACTTCGGATGTCGCATCAACCAATCC
TGCCCCCCCTTAATGACCCCGCTGTAGCAGCACTCAAACCGGTTACACAA
TGCTACAAGGATCTACTAGCCTCTCTTCAGGTCACGTGTCTTCTATACAC
ACTTCAAGGACATGCCTTGCGCACTTCTATCGAAGCACAGACGATACCGA
TAGCCGATGTTGCCACGCTGCTTGAGTCCTGCTCAACTCTACAGGACCTG
ATATCTTTCGCCTCGACTTCATTCCCATGCCGTAATGCAGATAATAAGGA
TGGTCGTTGCACAAATCAAACAAATGAGAGCATGACATCCGCATCGCGAA
TGATGGGAGCCCTCTCTCTCCGCGTTGCTCCCTCGCCTCATCCATCCGCA
TCATTTGTGCACCCAACACCTCGAGACGACTGTCAAAGACCCACCTGCGC
CCACAATTCCCACGCACCCCTTCCTACCAGTATCTCCATCGGCTCTTTAC
CGGACTCTGTGCTCATTAATGTTATATCCTACCTTACCGGCGGAGCGCGG
GAGACTACGGACCCAGCAGGTGGCCATGTCAGCCATGCATTTCACAACCT
TTCACACAAAGAAATCCGCGTTCAGCTAGGCGACATTCGAGCTGTCGCTT
TGCGCTGGTCGGTGGTGGGAACCGCGGACGAGCTATGGGAGCCTGTTGTC
CTCGCCCTCTGGCCTGTGACCCAAAGCCTTTCTCCCTCCCTCCTCCCCTC
CCTCTCTCCCTCCATGTGCCGGTCGTCGCTTGAAGGGCCCAGCGCCAACG
GTTCTGCTTCTCTAGGATTGTATCCCTCGTGGCGTTTTCATGGCACCCAT
TCCTTCCATGAGTTATGCCTGCGGCGCGGAAGAGCGATCGTAAACCCGGG
CCTGTGCCTAGTGACCCCTCAGTGGTCGGCAAGGTACCGTCTCCACTTCC
ACATTTTCGAAGAGCGTCATAGCATCCCTCTCTTCTCGGGCGAAGGTCCG
CTGGTCTGTCAAGAGTGGCAGAACCATCACGAACATCGTACCATCCTACG
CTTGGGCCCGGGGGCGGCGGTAGTGACCACTACCTTTTCCGCCAGTGGCT
GTGGAGGAGGCGTGGGGGGAGGAGACGTAGAAGGGGATGGAAGTGCAGGG
GGCAGGGGCGGCAGGCGCCAGAGGGTGGAGCGGTGAGTCGACTTCGGCGT
CTTGGGCTGTAATATCTACTCTGCTTGCTAGATTGAAGATTATTGTTGTG
TTGTTGAGATATGAACCCATCGGCCCTTTGATTTGTCGAGATTGAAGAGC
CTTTCACGACAGTTGGATGCTCGACTTTTGCCACATCGTTTGAGACTCCC
TGGCATATCTACTCAATTACTGTCTCACTTCTACATTACCTGCCTCCCTT
CCTCTCTTCCTATCTCCCGCCTTCCTACCCTTTCTTTCTCTCTTTCTAGT
TTTTTGACCTATGGAGTCGCAATCCGCGTGACCGTTATAGAGGCAGCTTC
AGGAAGGGAGGCGCTCATCTACCAGTCTTCGTGTACGCCCCCAAGCAACT
TTCCTCTATTTTCCACCATTCTCCTCGACATTCCATGCACTCTGCTCTCA
TCTTTCTCTCGCTTTTGGGCGTCGTCTCCATAGTCTTCTCCCCCGCTTCC
GTTTCCTCTATGTCATCATGAACCTCATTTCCCCCTCCCGTTGCCCCCAC
CCCCCCCTTCCCTCCCTCTGCCCCTCCTTAATAAGCCCGGACAGATCGAC
ATTGCCAAGAAGCCGCCCCAGGCTGGCCCGTACCCCCTCACTCCATCGCA
GTGACCGACCGCGCCGAAAGCTGGATGTCTGGAAAAGGAGGGGGGGCGTC
CCTCCCGCCATTGCGCTCCCTGTTTGACTTCACCGTCATTCCTGTGGGCA
TGACGCCGTCGGAGGGAGGGCGAGGCTCTGGCCGGGAAGGAGGGTGGGAA
CGGCGGTGCCTGTACAAAGTGCATGCCGCGCGGGTTGACCCGCCTGTCAA
CACGATTGCTCACACAGGCATCGTCGGGTTGGTGTTTCTCGGCCACGTCC
ATGAAGTTGGCCTTCTCCTCGCGTCTTTGCAGTGGGCGTAATCGACCCGC
CTCCTCTCTTCGTCTGATAGGACCCCGCAGGGTGAACTGCCTCTGGATCC
GATTTTTTTTCGGACTGAGGATAAGGCTGGGGTTATGGCTGGCGATTTCG
ATGATTGTATTGATCGGCCTTGTTTAAAAAATTCATGCCGTAAAAATGAG
GTTACATAAAAGGTGCCTCACATGTCAAAATCAGGGTGAAGAGAGAGCAA
TGTATGCCGCAAAGTAACCTCTTTGTCTCGAACCTTAATTGTTCGATCTC
CTTCAGGCAATGCGTCCCTTCCACCATTCCTTTGCCACCACGTGCTCCAA
GTTTTAGTATACATACACATACATTCTGGTCCTCTATCTACCACCATTTC
TCCGCCACCACCTGCGACGCCTCCAAGCAGCACCTTCCTTCCCGCGCTCC
TTCGGCTTTTAGCTTTCCCAGCAGCATGTCCTCCACGTCGTCGATCATCT
TCGCCGGTCCACAAACGTACACTAGGGCCTTTTTTCGTCC

protein sequence of rna2841

>rna2841-protein ID=rna2841-protein|Name=rna2841|organism=Nannochloropsis gaditana|type=polypeptide|length=384bp
MSHQPILPPLNDPAVAALKPVTQCYKDLLASLQVTCLLYTLQGHALRTSI
EAQTIPIADVATLLESCSTLQDLISFASTSFPCRNADNKDGRCTNQTNES
MTSASRMMGALSLRVAPSPHPSASFVHPTPRDDCQRPTCAHNSHAPLPTS
ISIGSLPDSVLINVISYLTGGARETTDPAGGHVSHAFHNLSHKEIRVQLG
DIRAVALRWSVVGTADELWEPVVLALWPVTQSLSPSLLPSLSPSMCRSSL
EGPSANGSASLGLYPSWRFHGTHSFHELCLRRGRAIVNPGLCLVTPQWSA
RYRLHFHIFEERHSIPLFSGEGPLVCQEWQNHHEHRTILRLGPGAAVVTT
TFSASGCGGGVGGGDVEGDGSAGGRGGRRQRVER

mRNA from alignment at CM002460.1:33800..36963+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2841 ID=rna2841|Name=rna2841|organism=Nannochloropsis gaditana|type=mRNA|length=3164bp|location=Sequence derived from alignment at CM002460.1:33800..36963+ (Nannochloropsis gaditana)
GTTTCTCGGTGCTGCTAACATGTCTGCCGCCCCTCCGAAAAACTAATCAG
GCGGTTTCACGTTTGGATACGGGCTGACAGGTTGCTTTGAAGCTAATATT
ATTTTTCCCCTCTACCTATCTGTGGTTATAGGACGCGTAAGTACCCCGAA
AAGTAGCGAGTTTCACTTCGGATGTCGCATCAACCAATCCTGCCCCCCCT
TAATGACCCCGCTGTAGCAGCACTCAAACCGGTTACACAATGCTACAAGG
ATCTACTAGCCTCTCTTCAGGTCACGTGTCTTCTATACACACTTCAAGGA
CATGCCTTGCGCACTTCTATCGAAGCACAGACGATACCGATAGCCGATGT
TGCCACGCTGCTTGAGTCCTGCTCAACTCTACAGGACCTGATATCTTTCG
CCTCGACTTCATTCCCATGCCGTAATGCAGATAATAAGGATGGTCGTTGC
ACAAATCAAACAAATGAGAGCATGACATCCGCATCGCGAATGATGGgagc
cctctctctccgcgTTGCTCCCTCGCCTCATCCATCCGCATCATTTGTGC
ACCCAACACCTCGAGACGACTGTCAAAGACCCACCTGCGCCCACAATTCC
CACGCACCCCTTCCTACCAGTATCTCCATCGGCTCTTTACCGGACTCTGT
GCTCATTAATGTTATATCCTACCTTACCGGCGGAGCGCGGGAGACTACGG
ACCCAGCAGGTGGCCATGTCAGCCATGCATTTCACAACCTTTCACACAAA
GAAATCCGCGTTCAGCTAGGCGACATTCGAGCTGTCGCTTTGCGCTGGTC
GGTGGTGGGAACCGCGGACGAGCTATGGGAGCCTGttgtcctcgccctct
ggcCTGTGACCCAaagcctttctccctccctcctcccctccctctctccc
tccatgtgCCGGTCGTCGCTTGAAGGGCCCAGCGCCAACGGTTCTGCTTC
TCTAGGATTGTATCCCTCGTGGCGTTTTCATGGCACCCATTCCTTCCATG
AGTTATGCCTGCGGCGCGGAAGAGCGATCGTAAACCCGGGCCTGTGCCTA
GTGACCCCTCAGTGGTCGGCAAGGtaagaggagaggagagagccTACAca
gcagagagggagagggaaaatgcgGACAAGAAAAgccaaaggaggagacg
aagggaaaAGTCAGAGCGGAATAACAGGGAAGGAGTACAGGCACAAGTGT
ACCGGCGTGATGCAGAGAGACAAGGGGAAGTCATcaacggagaaggagga
agggaggaaagaagagggatgCAGCAAAGGAGACATGCGAGTGTTTCCAT
TCCCGTTTTATAACCAAGGGCGAAGAGTAGTTGACCAACAGTGTTACTAG
TCAGATGCTGTCTGCAGTGGCGAGCGCAGCGCAACCAGACAAGAagttct
tcctccctcctacgcttctttcctctttttccctccccgcctttctcccT
ATCTCTGTTCCTTCTCTCATCTTCTATCGCTATCTTTCCATTTCTTTCCT
ATTACAGGTACCGTCTCCACTTCCACATTTTCGAAGAGCGTCATAgcatc
cctctcttctcggGCGAAGGTCCGCTGGTCTGTCAAGAGTGGCAGAACCA
TCACGAACATCGTACCATCCTACGCTTGGGCCCGGGGGCGGCGGTAGTGA
CCACTACCTTTTCCGCCAGTggctgtggaggaggcgtggggggaggagac
gtagaaggggatggaagtgcagggggcaggggcggcagGCGCCAGAGGGT
GGAGCGGTGAGTCGACTTCGGCGTCTTGGGCTGTAATATCTACTCTGCTT
GCTAGATTGAAGATTATTGTTGTGTTGTTGAGATATGAACCCATCGGCCC
TTTGATTTGTCGAGATTGAAGAGCCTTTCACGACAGTTGGATGCTCGACT
TTTGCCACATCGTTTGAGACTCCCTGGCATATCTACTCAATTACTGTCTC
ACTTCTACATtacctgcctcccttcctctcttcctatctcccgccttcct
accctttctttctctctttctagTTTTTTGACCTATGGAGTCGCAATCCG
CGTGACCGTTATAGAGGCAGCttcaggaagggaggcgctCATCTACCAGT
CTTCGTGTACGCCCCCAAGCAACTTTCCTCTATTTTCCACCATTCTCCTC
GACATTCCATGCACTCTGCTCTCATCTTTCTCTCGCTTTTGGGCGTCGTC
TCCATagtcttctcccccgcttccGTTTCCTCTATGTCATCATGAacctc
atttccccctcccgttgcccccaccccccccttccctccctctgcccctc
cttaATAAGCCCGGACAGATCGACATTGCCAAGAAGCCGCCCCAGGCTGG
CCCGTACCCCCTCACTCCATCGCAGTGACCGACCGCGCCGAAAGCTGGAT
GtctggaaaaggagggggggcgtccctcccgccattGCGCTCCCTGTTTG
ACTTCACCGTCATTCCTGTGGGCATGACGccgtcggagggagggcgaggc
tctggccgggaaggagggtgggaacgGCGGTGCCTGTACAAAGTGCATGC
CGCGCGGGTTGACCCGCCTGTCAACACGATTGCTCACACAGGCATCGTCG
GGTTGGTGTTTCTCGGCCACGTCCATGAAGttggccttctcctcgcgTCT
TTGCAGTGGGCGTAATcgacccgcctcctctcttcgtCTGATAGGACCCC
GCAGGGTGAACTGCCTCTGGATCCGATTTTTTTTCGGACTGAGGATAAGG
CTGGGGTTATGGCTGGCGATTTCGATGATTGTATTGATCGGCCTTGTTTA
AAAAATTCATGCCGTAAAAATGAGGTTACATAAAAGGTGCCTCACATGTC
AAAATCAGGGTGAAGAGAGAGCAATGTATGCCGCAAAGTAACCTCTTTGT
CTCGAACCTTAATTGTTCGATCTCCTTCAGGCAATGCGTCCCTTCCACCA
TTCCTTTGCCACCACGTGCTCCAAGTTTTAGTATACATACACATACATTC
TGGTCCTCTATCTACCACCatttctccgccaccacctgcgACGCCTCCAA
GCagcaccttccttcccgcgcTCCTTCGGCTTTTAGCTTTCCCAGcagca
tgtcctccacgtcgtcgatCATCTTCGCCGGTCCACAAACGTACACTAGG
GCCTTTTTTCGTCC

Coding sequence (CDS) from alignment at CM002460.1:33800..36963+

>rna2841 ID=rna2841|Name=rna2841|organism=Nannochloropsis gaditana|type=CDS|length=2310bp|location=Sequence derived from alignment at CM002460.1:33800..36963+ (Nannochloropsis gaditana)
ATGTCGCATCAACCAATCCTGCCCCCCCTTAATGACCCCGCTGTAGCAGC
ACTCAAACCGGTTACACAATGCTACAAGGATCTACTAGCCTCTCTTCAGG
TCACGTGTCTTCTATACACACTTCAAGGACATGCCTTGCGCACTTCTATC
GAAGCACAGACGATACCGATAGCCGATGTTGCCACGCTGCTTGAGTCCTG
CTCAACTCTACAGGACCTGATATCTTTCGCCTCGACTTCATTCCCATGCC
GTAATGCAGATAATAAGGATGGTCGTTGCACAAATCAAACAAATGAGAGC
ATGACATCCGCATCGCGAATGATGGgagccctctctctccgcgTTGCTCC
CTCGCCTCATCCATCCGCATCATTTGTGCACCCAACACCTCGAGACGACT
GTCAAAGACCCACCTGCGCCCACAATTCCCACGCACCCCTTCCTACCAGT
ATCTCCATCGGCTCTTTACCGGACTCTGTGCTCATTAATGTTATATCCTA
CCTTACCGGCGGAGCGCGGGAGACTACGGACCCAGCAGGTGGCCATGTCA
GCCATGCATTTCACAACCTTTCACACAAAGAAATCCGCGTTCAGCTAGGC
GACATTCGAGCTGTCGCTTTGCGCTGGTCGGTGGTGGGAACCGCGGACGA
GCTATGGGAGCCTGttgtcctcgccctctggcCTGTGACCCAaagccttt
ctccctccctcctcccctccctctctccctccatgtgCCGGTCGTCGCTT
GAAGGGCCCAGCGCCAACGGTTCTGCTTCTCTAGGATTGTATCCCTCGTG
GCGTTTTCATGGCACCCATTCCTTCCATGAGTTATGCCTGCGGCGCGGAA
GAGCGATCGTAAACCCGGGCCTGTGCCTAGTGACCCCTCAGTGGTCGGCA
AGGTACCGTCTCCACTTCCACATTTTCGAAGAGCGTCATAgcatccctct
cttctcggGCGAAGGTCCGCTGGTCTGTCAAGAGTGGCAGAACCATCACG
AACATCGTACCATCCTACGCTTGGGCCCGGGGGCGGCGGTAGTGACCACT
ACCTTTTCCGCCAGTggctgtggaggaggcgtggggggaggagacgtaga
aggggatggaagtgcagggggcaggggcggcagGCGCCAGAGGGTGGAGC
GGTGAATGTCGCATCAACCAATCCTGCCCCCCCTTAATGACCCCGCTGTA
GCAGCACTCAAACCGGTTACACAATGCTACAAGGATCTACTAGCCTCTCT
TCAGGTCACGTGTCTTCTATACACACTTCAAGGACATGCCTTGCGCACTT
CTATCGAAGCACAGACGATACCGATAGCCGATGTTGCCACGCTGCTTGAG
TCCTGCTCAACTCTACAGGACCTGATATCTTTCGCCTCGACTTCATTCCC
ATGCCGTAATGCAGATAATAAGGATGGTCGTTGCACAAATCAAACAAATG
AGAGCATGACATCCGCATCGCGAATGATGGgagccctctctctccgcgTT
GCTCCCTCGCCTCATCCATCCGCATCATTTGTGCACCCAACACCTCGAGA
CGACTGTCAAAGACCCACCTGCGCCCACAATTCCCACGCACCCCTTCCTA
CCAGTATCTCCATCGGCTCTTTACCGGACTCTGTGCTCATTAATGTTATA
TCCTACCTTACCGGCGGAGCGCGGGAGACTACGGACCCAGCAGGTGGCCA
TGTCAGCCATGCATTTCACAACCTTTCACACAAAGAAATCCGCGTTCAGC
TAGGCGACATTCGAGCTGTCGCTTTGCGCTGGTCGGTGGTGGGAACCGCG
GACGAGCTATGGGAGCCTGttgtcctcgccctctggcCTGTGACCCAaag
cctttctccctccctcctcccctccctctctccctccatgtgCCGGTCGT
CGCTTGAAGGGCCCAGCGCCAACGGTTCTGCTTCTCTAGGATTGTATCCC
TCGTGGCGTTTTCATGGCACCCATTCCTTCCATGAGTTATGCCTGCGGCG
CGGAAGAGCGATCGTAAACCCGGGCCTGTGCCTAGTGACCCCTCAGTGGT
CGGCAAGGTACCGTCTCCACTTCCACATTTTCGAAGAGCGTCATAgcatc
cctctcttctcggGCGAAGGTCCGCTGGTCTGTCAAGAGTGGCAGAACCA
TCACGAACATCGTACCATCCTACGCTTGGGCCCGGGGGCGGCGGTAGTGA
CCACTACCTTTTCCGCCAGTggctgtggaggaggcgtggggggaggagac
gtagaaggggatggaagtgcagggggcaggggcggcagGCGCCAGAGGGT
GGAGCGGTGA

Synonyms

Publications