rna2804, rna2804 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2804
Unique Name	rna2804
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	4402
Alignment location	CM002459.1:1267657..1268069 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100094g13.6808.mrna
Orig protein id	gnl\|cribi\|Naga_100094g13.6808
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:1267657..1268069 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100094g13	gene2684	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2804	rna2804-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27873.1	cds2796	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:1267657..1268069+
coding sequence from alignment at CM002459.1:1267657..1268069+

mRNA sequence

>rna2804 ID=rna2804|Name=rna2804|organism=Nannochloropsis gaditana|type=mRNA|length=4402bp
GTATTAGTTTTCACTCCTGTTATCTCTTGCAATGGAATTATATGTCGAAC
CGACCCGTGGGGTTGACCTTTTCAGCTATTTTCTATAAAGGATGTGGGAA
GATGTGACACGCGTACACGAAGTACGTTCTTACACCGGCAACTTGTCTCC
GGACGGTACCTTCTCATAATACGATGGCAAGCATCACACTTCAGACAATC
TCATTTCGCTTTTATTACCTTCTTTATCTTTTTGGCTGTAATATCATAGT
ATTTGGCGTAGCGGAAAGGCCTCTTGGCCTTCGAAGGCCACACAGCTTCA
CTCGCGATTTGACCTGAATTCATTGCATCGTCTTGGACTGGACTACCGCG
AGCAGACGCGAAACGATTACACCATCGGAACAAGTACAACATATATTCTG
GTTTTTGTTTCACGTCTGTGACACATTTGCCTGCGCCCGCTTTAGGACGA
AGGAGCAAGGCAGCACAGCGGAAGAGCAAAAAAGCCGTCCGTTGTAATCC
TCGACTTACCTGGCTCACAGTGGCATCTGCATGCAAAGAGGCTAAGCAGC
ACGTGCTTTGACAAGATGGAAATGGACTGCCAAATGGGCGAGGGCCCCGT
TCGGACATGTGAGCGGGGACCATACGTCTACCATTTTGACTCCTTCTTCA
AGGGGCCGTCCGTGCCAAGATTGAACCCGTGCGTGATCTGTTTGGAACCG
ATCGAAGAAGGCGCAGATTTAACGTCATTATTGGGGTGCGAAGATCGTCA
TCACTTTCATGCCAATTGCATCAATTCCTGGTTGGAACGGAATGCCACCT
GTCCCACATGCCGGAAAGGGGCCACCCGGTTTCCTTTCCTGCGACGCATG
GCAGAGTCTCCCTTGGACCCGTCGGTCCAGTACCAGGGGCTCCTCGCCAT
CGTCAAGACCGCTTCCGTCGAAGGACCACCACAGTATTCGATCCAAAACG
TCACTCGTCTCGGCGAGCTGGGGGCCTGTCGTCTCGTCGTGACGGCAATG
CAGACTTTCAGCGGGGATCGCTGCATCCAATTAATGGGTTTGGAAGCAAT
CGAAGCCCTGGCTGCCAAAAGCGAAGGGGCAAGGGCGAACTTCCAACAGG
AGTCAGCTGAAGAGCTCTTCACGCGCATTTTTGAGATGCATACCGACGAC
AAGGACTTACAAGCCGCCGCTTGTCAGGCACTCGTGGGTCTAGCCACCGG
CCATCCTGAATGGCAGAACCGTCTGGGCCTCGCAGGTCTGTGCTCTCGCG
TCACTGAAAGCCTCCGTCAATGGCCCGACGACTATGGGATCCAACTCTCA
GGCCTTTACGCTCTAAATGCCCTTCTCTCCCGGCATGAGGCCAACACCCA
GAGGGTTTTCGAAGCGGGCGCCGGCGCCATCCTGGTCCAGATGATGAAGA
CCTTTTGGAGGGACTTGGACGTGTTAGACGGGGCTATCACGGCCATCTAC
AGCCTATCCTCTCGCGGGGCCGTCGAACGAAGCTGTCTGGGGCAGCTGGA
TTGTTGCCGCGTTCTATTGGCGGTCATGGCCGCTCATCCTGACGCGAGAG
ACCTGCAGGTCAAATGCTGCTTCGCCATCGCCAAACTTGCCTGGCAGCAC
GCGGAGAATCGGCATCGATTGGTGGCCCTGAAGGCGGCGTTGGTTGTGAC
ACAAATCTTTAACAAGCACCCGTTCGACGTGGCGATCCACGTGGCGGGTT
CAGCGGCCATGGTTGCGCTCTACATGCCTTTGGCTCTGGCACAGCGTTTG
GCAGAAAAAGCCACCACCATTCTTTTGAACAAGACTGCCTTCCTTCTCAC
CTCCCCCTCGGCGCAGCACAAGTTCCACCATCACCCTCCCTCCGTCCTGG
CAAACGGTTCGGAACCTCCGCCCTTCCAGCAGGCGGTGGGGTGGAACAGG
GAAAATCCGGCCAAGGAGAGGCCGACCGATCTCAATGGGCCAACGAGGGA
TGGGGACGGGATGGCTGAAGCACAGGCCTTCCAGGCTTTGGTGCGTGCAC
TGGCCACCATCCCGGCCGAGTCAGAACTGGAAATTTCTGCCTCGCCCGCC
CTTCTCTTCTTACTGGAAGTAGTCAATGGCCGCCACCCACTACTTGATGA
CCAGCCCACGGCATCCAATTTTGTTGCCGCGATGGAGAACTATGCGCGCG
ACGAAGACTCGCAAGACATTTATCTGGAAGTAGCGATTCTTATTACAGAC
GCGAGTCCCACGGCCAGGGAGATGCTTTTGCAGTCCGGAATCACCCGCTG
CGTGCTCGACTTAATGAAACGATACCTGTCCGTGGCGTCCCTGCAAGAAA
AATGCTGCATGGTCCTCGCAACTTTGACGGAGGAAAGTCCTGAGACAGTG
GAACGTGTCTGGAACGAGCAGATGATGGCGGCCTTGGTCGACGTGGTAAA
GGCGCACCCCAGCCAGCCTGTTCTGCAACACTTTGCACTCTCTTGCCTTC
AGAATCTCGCGGAAGACGGAAGCCCTTTACAACGGTCCTCCTTGATCACT
CCCAGCGTCCTCTCTCTGGTAGCACTCTCCCTTGCCCTGCATCCTACGGA
CGAGGACATTGGCAGTGCGGCCTTGGGCTTGATCGTCTCCCTAGCAGCTC
AGGAAATGGATTCGCCGGGCCAGATCCGCACCTGCCAGCACGCATCCAAT
CTCCACACTAATGGAAATGGCAACGGCTCCCACGATCAGGCCAATGGCCA
CGCGGAGGTCAAAGCGGAAGGTGATGGTGACATCGCGGCCAGCACCCTCC
CTGTTCCCTCGGGACCGTCCTACGTGCGTGCAGTGCTCTCCATTCTCAGG
GCGGTATGGAAGCAGATCCATTCCTCTTCCTCCGTCGCTTCCTCCCACTC
CTCCTACTCCTCAAACGTATTGGACGAGAAGGAAATTACGCGCCTCTCGG
CTCTGGGAATCTTGAAATGGCTGACTTTGGTGGCAAGGGACTGTGCCCCT
GACGAAGTTGCCATATTGAGCGACGACGCGTCGGTACATACCATGTTCGA
GGAGGTTGCGGGGGGCCTGGCAATCAGCCACCCTCGTTCCCACTCCCACG
CCCCTTCGACACTCATGCTCCCACCTCCCCCCGCCCCGCCTTCCCTGCTG
TCCCAGAAACGGTCCCGTCTGAGTTCCCTCCCGAATACCGCCGCCGCGTC
CTCCTCTCTTATAGACACCGCGGAAATGCACGCGAAACGCTTGTGCTTGG
ACTTGGTAGCTTCCCTCCCCCAGAGGGACTTGGAGACTTCCTGGCCTCGT
GCTTGCGGGGCGGTAGTGGGAGGACTACAGGAAGGGAAAGGGAGGGGAGC
GGTCACCCTCAGCGCCTTGGCGGGGGTGGTGGCACTTGCGGAAGGGAACG
AGCAAAACAAGAGCGTCCTTCAGGGACTGGGAGCAGGGAAGGGATTGAGT
GCCGTGGCCGCAGTGGTCGAGACGAGGGAGAGGGAGCTGTTGACTAAGGC
ACAAGAAGCGTTGCGGTAGCAGGGGAATGTGTAGTGAGTGAAGGAATGTT
GCCTGGGTAGGGTGTACATAGTAAGCAAACAGATCGGAGGTAGCCAACGT
TCAGGGCGGGGCCGAACGGGGCAAGAAAGCCGCGCTTGCGTGGACTAGAA
AGTGAGATATTGGTAGAATTTAGAAGGCAGTTTCTATAGCAAGGATGTGG
GACAAAGACGGGAGGAAATGCTAATGCAGCAATCCTCCAATATGCCTTGG
AAGGTAGCGCCTAGGGTTGCGAAGCCCTGTGGCGCCTGTCGATCATGGAT
ATCTTTTTTGCAGTCTAGGATGTACCGACCATAACTTTGTTTTGTGCCGA
CGAGGGAGAAGGAAAGGGCCACGTTGGGTGTCTGGATTTGATAGGGAAGC
GACTTCTTGGCGTATATGTGAGCGTGCAGCCGGCTTACTTGCGTAGTTGG
GTGCCTTCGATGATGCACCGGTATGGTGACTCAGACAATGATGATGATCG
CGATCTTTTTGTTTTGATTATAACGCGTTGTCTCTGTGTCTGGGGTCAAC
ATTCGAAGACAAAGGAAAGGAACAAATTCCAGCGCTATGATTAGCTTAGG
CTCTTACGACAATTTAATGAGTTTGTCAAACCTGCGTGTACCTTACAAAT
TTGAATGATATGTTCTGCAGGTGTGGAAAGCCGTACTAGCGGCACAGCCG
TCTTGTCGACACATCCCGCAGGAGTTCTTTTCCATGCCCCCTTCCTCGTA
AGCCCCTTCCTCGTAAGCAAATTGCACCAGACTATGCCCTTTTATTCTTT
ATTTGATTTGCCTTAAGCTGGTGTCATCACTGCTGGTAGAGATTGATATA
TATTCCGTTACATGTACACAGTTGTCCAGGACGACTTCGGAAATCGCTTT
CATGCAACACGTCACTTAAAATTTTGATTTCAACGTCAGAAGCTACAAAT
TA

protein sequence of rna2804

>rna2804-protein ID=rna2804-protein|Name=rna2804|organism=Nannochloropsis gaditana|type=polypeptide|length=122bp
MHFMRRNGVARRTFPTIFPADTFRTFAMSDFLPGLICLRTFHRSARRFVL
DTSNLVMFCFRTSDVTLDTQDLSAMQINYHFEHNRWAQKKISRDPGNLRN
TEILCPMFLAFHSSPVAPRVAY

mRNA from alignment at CM002459.1:1267657..1268069+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2804 ID=rna2804|Name=rna2804|organism=Nannochloropsis gaditana|type=mRNA|length=413bp|location=Sequence derived from alignment at CM002459.1:1267657..1268069+ (Nannochloropsis gaditana)
ATGCACTTCATGAGGCGCAACGGTGTGGCGCGTCGCACTTTCCCTACTAT
TTTTCCGGCCGATACCTTCAGAACTTTTGCCATGAGTGACTTTTTACCGG
GCTTAATATGTCTGTAGCTGAAGCCTTTTTAGGATATCATTTGGGCGCAG
TGTAAAGCCGCACGTTTCATCGGTCTGCAAGACGTTTTGTCTTGGATACC
TCCAATTTGGTTATGTTTTGTTTCCGCACGAGCGATGTTACACTAGATAC
ACAAGATTTATCAGCAATGCAAATAAACTATCATTTTGAACATAATCGAT
GGGCACAGAAAAAGATAAGCCGCGACCCCGGAAATTTGAGAAATACAGAA
ATTCTGTGTCCCATGTTTCTGGCATTCCATTCATCACCCGTGGCACCACG
GGTAGCATACTAG

Coding sequence (CDS) from alignment at CM002459.1:1267657..1268069+

>rna2804 ID=rna2804|Name=rna2804|organism=Nannochloropsis gaditana|type=CDS|length=738bp|location=Sequence derived from alignment at CM002459.1:1267657..1268069+ (Nannochloropsis gaditana)
ATGCACTTCATGAGGCGCAACGGTGTGGCGCGTCGCACTTTCCCTACTAT
TTTTCCGGCCGATACCTTCAGAACTTTTGCCATGAGTGACTTTTTACCGG
GCTTAATATGTCTCCGCACGTTTCATCGGTCTGCAAGACGTTTTGTCTTG
GATACCTCCAATTTGGTTATGTTTTGTTTCCGCACGAGCGATGTTACACT
AGATACACAAGATTTATCAGCAATGCAAATAAACTATCATTTTGAACATA
ATCGATGGGCACAGAAAAAGATAAGCCGCGACCCCGGAAATTTGAGAAAT
ACAGAAATTCTGTGTCCCATGTTTCTGGCATTCCATTCATCACCCGTGGC
ACCACGGGTAGCATACTAGATGCACTTCATGAGGCGCAACGGTGTGGCGC
GTCGCACTTTCCCTACTATTTTTCCGGCCGATACCTTCAGAACTTTTGCC
ATGAGTGACTTTTTACCGGGCTTAATATGTCTCCGCACGTTTCATCGGTC
TGCAAGACGTTTTGTCTTGGATACCTCCAATTTGGTTATGTTTTGTTTCC
GCACGAGCGATGTTACACTAGATACACAAGATTTATCAGCAATGCAAATA
AACTATCATTTTGAACATAATCGATGGGCACAGAAAAAGATAAGCCGCGA
CCCCGGAAATTTGAGAAATACAGAAATTCTGTGTCCCATGTTTCTGGCAT
TCCATTCATCACCCGTGGCACCACGGGTAGCATACTAG

Synonyms

Publications