rna28, rna28 (mRNA) Nannochloropsis gaditana

Overview
Namerna28
Unique Namerna28
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length550
Alignment locationCM002455.1:90519..91729 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101463g1.4142.mrna
Orig protein idgnl|cribi|Naga_101463g1.4142
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:90519..91729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101463g1gene26Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna28rna28-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30646.1cds28Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna28 ID=rna28|Name=rna28|organism=Nannochloropsis gaditana|type=mRNA|length=550bp
AACGGGTAATTTACAGGTAGTGTCCATATTGATGGAAGACAGTCCAGGAC
ACCAAGATGGCGAAAGTAGTGGCCTAAGGGACTCTTCACAGCCAGTTTGC
ACCTTCAAAAAGCCAGTTTTCAAGAAAAAAGGAGCAAAACAACAAAACAA
ACGGGCCCGCAAGCAAGCATCAGACTCGGGATCTGGAAGCTCGAGCGAGG
AAGCGGAGGAATCAGTCTTACTCCGAAAACAACAGAGCAATAATACGCGA
GGCGTCATCTCTACTACTGCAACCAAGTCCAGCGTCCTTCACACGTATGC
TTCCACCGGGACCGCCTCCCCACTGGCTGTCGCGGGAGGAGCCACCTATA
CAAGTGAGATCGACACCGAGCACGACCGGGACAACCGGGCGATGATGGAA
ATGGCCCTACGCGCTCAGCAGGAGGAGGAGGACGCGTCGGGGGCGGGTGG
GGAGAAAATTTATCGCGGACAGGTGAGGAGGGAGGGAGGGAGGGAGGTTG
GGAGGGAGGTTGGGAGGGAGGGAGAGAGGGAGGGAGGGAGGGAGGGAGGA
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protein sequence of rna28

>rna28-protein ID=rna28-protein|Name=rna28|organism=Nannochloropsis gaditana|type=polypeptide|length=191bp
MAVYKQRCLSCALFILLHISSFSAQILPSHPSLRIHRFPSSSSSSSSSSS
SSFFPPPSSSSSSSTSVPHSLHVEDTKEMRASPHDAPAPTSPGQPPPSFP
SHPMKPRGPGRATGVFEVLIVPHSHCDAGYKKTVEGYYLTEVLPSSPPSL
PPSLPPSPPLILSSPHSSLIYLVSGPNFGLIFLALPPFLFP
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mRNA from alignment at CM002455.1:90519..91729+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna28 ID=rna28|Name=rna28|organism=Nannochloropsis gaditana|type=mRNA|length=1211bp|location=Sequence derived from alignment at CM002455.1:90519..91729+ (Nannochloropsis gaditana)
atccccccttcctccccctctccccgatTCAAACAGATAGGAGGTCCCGT
ACCCGACTTtaaccctcctcctcctgcgacgACCACCACACAAGGAAATG
CGACACCGTCTTCGCACCTTTATGCAAACGATTGTGCTGGCTGACGGCTC
TTCTATTCGGACACCTACTTTCTTGAGTAAGAATCAACCGCGGGTGCTTT
TAGTGAAGGTAAGGGCCTGGCTCCCCTCCCAGAAAGGAAAGTAGAAAACT
AAGGTACACCCGTAAACATGTACACGTCTTTCAGGAAAATCTAGTAAAGG
CTTGTCGGGCACACAAACCTCATGTCTCATATCTTCCAATGCCCACTTCC
TCTCGATGTGCCACAGACGGACCCTCGGGCCCAGCAAATAGCGGCGGAAC
AGCGGagtagggagggggagcaggcccGAAGGACACAGCCAGCACCGCAA
GAAAAACAGGAATAAGACGGGTGTGTGACGTACGGAGAAAGTGTGCGTGG
GAAAATGTAGGGGAAAGACGCATAGACGAGCGAAAGGCCTGACATGCCCT
TTGGTTTCTCTGCTATAACTTTGcagaaaaaagaaagaaaggaaggcctG
TGGGCGTTCTTCGTGGCGTAAGCACACCTGGGAAGTGATGGCTGTTTACA
AACAGCGATGCCTTTCCTGcgccctcttcatcctccttcacatttcgtcc
ttctcggcccAAATCCTcccatcccatccctccctccgaatccatcgctt
tccttcctcctcctcctcctcctcctcctcctcctcctcctctttcttcc
cccctccctcctcctcctcctcctcctcaacctccgTTCCCCATTCTCTT
CACGTGGAGGACACGAAGGAGATGAGAGCTTCTCCACACGACGCGCCAGC
GCCTACCTCCCCtggccaacctcccccctccttcccttctcatcctaTGA
AGCCTCGAGGGCCGGGGCGGGCCACGGGAGTCTTCGAAGTCCTCATAGTC
CCTCACAGCCACTGCGATGCGGGGTACAAGAAGACAGTCGAGGGCTACTA
CTTGACCGAGGtacttccttcctcccctccctccctccctccctccctcc
ctccttcccctccgctcatcctctcttctccccatTCGAGTCTGATATAC
CTGGTCTCAGGCCCCAATTTTGGCCTGATTTTtctcgctcttcccccctt
cctctttccct
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Coding sequence (CDS) from alignment at CM002455.1:90519..91729+

>rna28 ID=rna28|Name=rna28|organism=Nannochloropsis gaditana|type=CDS|length=574bp|location=Sequence derived from alignment at CM002455.1:90519..91729+ (Nannochloropsis gaditana)
ATGGCTGTTTACAAACAGCGATGCCTTTCCTGcgccctcttcatcctcct
tcacatttcgtccttctcggcccAAATCCTcccatcccatccctccctcc
gaatccatcgctttccttcctcctcctcctcctcctcctcctcctcctcc
tcctctttcttcccccctccctcctcctcctcctcctcctcaacctccgT
TCCCCATTCTCTTCACGTGGAGGACACGAAGGAGATGAGAGCTTCTCCAC
ACGACGCGCCAGCGCCTACCTCCCCtggccaacctcccccctccttccct
tctcatcctaTGAAGCCTCGAGGGCCGGGGCGGGCCACGGGAGTCTTCGA
AGTCCTCATAGTCCCTCACAGCCACTGCGATGCGGGGTACAAGAAGACAG
TCGAGGGCTACTACTTGACCGAGGtacttccttcctcccctccctccctc
cctccctccctccctccttcccctccgctcatcctctcttctccccatTC
GAGTCTGATATACCTGGTCTCAGGCCCCAATTTTGGCCTGATTTTtctcg
ctcttccccccttcctctttccct
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Synonyms
Publications