rna2793, rna2793 (mRNA) Nannochloropsis gaditana

Overview
Namerna2793
Unique Namerna2793
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1844
Alignment locationCM002459.1:1232198..1233039 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100288g4.9956.mrna
Orig protein idgnl|cribi|Naga_100288g4.9956
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1232198..1233039 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100288g4gene2673Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27888.1cds2785Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2793rna2793-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2793 ID=rna2793|Name=rna2793|organism=Nannochloropsis gaditana|type=mRNA|length=1844bp
CTTCTCATATTTTCTATGTCCACATCAGATTTACTTTAAGGTTATTCCAT
GCTTTTATTTTCTGGAAGTTGCTTGCATTGGAGTCCTGTGTTGGCCTCTC
TGTCGGCCTTTCTTTTCGTATTTCAGGTCGTGGCGGAACCTAGTATTGAA
GCCTTAGCTGTAAGGGAATTTGAAGGATGGATGTCGCATCATGACAAGGT
TTATTCCTCTGCAGGTGAAAGAGAGCAGCGCTTTCAAAATTGGTTGCAGG
CTTACGAAAGGGTGCGTCGTCATGCTCATCCCCACTATTCGCTGGGACTC
AACGAGATGAGCGATTGGAGTCCCAAAGAACACGCCAAACGCTTGCATCG
ACGGGATCGTCATGGAAATCACATGCTTGGGTTTAACTTAGTAGCGGGAT
GGCGACGGAGGTTTGTGGAGGAGTTTGGAAGCAATCATCCTCGAATTTTT
GACGGCCGATCCGACCCGCCACCCCCGCCTGAAATTGACTGGAGGGATGA
GAAGCGGAACCCCAAGCGTGTGCATGGTGTGACACGCATACGCAATCAAT
ATTACTGCGGTGGATGTTACAGTTTGGGGGTGGTGGCGGCGGTGGAGGGT
GTGGTAGCAGCCGATCGAGGCTTTCTTAATGAGTTGAGCGACGAGCAAAT
TTTGGACTGTGATAGAGTCAATCATGGGTGCGAAGGTGGTGACCCTCAGC
AGGCTTTGCAGTACGTCATGACTGAGCCTTTAGTACTAGCGGCTGACTAT
CCTTTTGACGCAGGTGCCGGAAATGTGGGTGAGTGCGCAGCAAAGCAGGC
GCCGCCTGCATCTCAGATCCGAAGTTACTTGTACGTGCAACCCTGTGATG
AAAGAGTTCTTATGCAAGCTGTGGCTAGGAGCCCTGTGGTAGTAGCAATC
GATGCCTCCTGTGACGCGTTTTTGCAATACGCGGGAGGGGTGCTTTCGGA
CTCTTGCGTGAACGTGAGACTTGGCACGAGGGCCGTTGATGGTGTGTGTG
AGGATGCTCTTAACCATGCAGTGGCCATCGTCGGGTACGGAACCGACGAG
AAAACTGGCTTAGACTACTGGATCATCAAAAATAGCTGGGGAGTGACTTG
GGGAGAGAAAGGTTTTGCTCGCGTGATGCGAGGTGAATCCGAGGCAACTG
GTTGGACGACAAAGTGCGGTTTAGGGTGCTTGGAATACTACAATTTCCTG
CCCACCGGCGGGGTCGCGTTCATGAATGGGACACTTCAGTCGGATGATAA
CTTCCTACATGGAGTAGAAGGGACCGCAAGTCAAGCGAAGGAAAATTTCG
GGGATATGATGTTGGGGTTGGCTTGCGCCTTGGCAGTCTGCCTCACTATT
CTGGCTGCATGGGGAGGGCAGCGCCAGCTCCGACGTATGAACTCACAAGA
AAAAGAAAGTACAGTCGAAGACACTGGTCGTGCCAACACTTTCTTGAGAG
AACCTTTGCTGCAATTAGAAGAGGAGAAGAAGTCCAATTCTGTTGAAAAT
TAAGAAAACACAAATGCAGCTATAAGGACTGAAGGACTAACATGTACATG
ATGTATATTGAAACCATCTTTCGCCATCATCGTTCCCGAGAAATGAAGTA
AATAGCACTCTCAAATACATCGTTGACCACAGAATATCATTCACCAGGAG
CTTATCACCTGAAGTTTTCAGTGTGATGGCTGTCGGGCATGTCTTCTGGT
GCAGCGATGGAAGAGAATTAAGCAGGTGCCAATGGTAAAGGCTTGAGGGA
ATTACGTTTGTATCACTCACCGGGCGATCGGTACTTCTGGTGTGGCAGCT
TCTGCTGCTTATTGTTTAAGAAGTATTTACGACGATCCCAGTGC
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protein sequence of rna2793

>rna2793-protein ID=rna2793-protein|Name=rna2793|organism=Nannochloropsis gaditana|type=polypeptide|length=121bp
MRYPQSEVLNRPAISRKTVGGKPMSKIETCVKGSSVRVSVTSPFRMKILW
LMRFAPATMPGAARDACICLRVHRCGCLGLSLLICSSKLLIELWPIKFKP
GLKSGSTSLRAGGAGRGLARL
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mRNA from alignment at CM002459.1:1232198..1233039-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2793 ID=rna2793|Name=rna2793|organism=Nannochloropsis gaditana|type=mRNA|length=842bp|location=Sequence derived from alignment at CM002459.1:1232198..1233039- (Nannochloropsis gaditana)
GCAGCTTGACCTTGAAGCCGTAGCGCCCTCAGAAGAGCGTGGGCCGGTGG
TAACAGATGAGGTATCCGCAGAGCGAGGTGTTAAATCGTCCAGCGATCTC
GCGCAAGACCGTTGGCGGGAAGCCGATGTCGAAGATAGAGACGTGCGTGA
AGGGGTCCAGCGTTCGGGTTTCCGTCACGTCGCCGTTTAGGATGAAGATT
TTGTGGTTAATGCGGTTTGCTCCCGCGACCATGCCTGGTGCTGCCCGGGA
TGCCTGCATCTGCCTCCGCGTCCACCGCTGCGGCTGCCTGGGCCTATCGT
TATTGATCTGCTCCAGCAAGCTCTTGATTGAGCTCTGGCCGATCAAGTTC
AAGCCTGGCTTGAAGAGCGGGTCCACAAGCCTCCGGGCGGGCGGTGCGGG
GAGGGGGTTGGCGCGTTTGTAGAAGTAGGCCCTGTGGCCCTCTCTGGAAC
CGTGCATTGACGTCTTGATCTGCGTGAGCAGGCTGACGTCGAATCCGTAG
CGCTCGGCGATGAGCTTGGGTCGGTGGTAGCAGATCAGGAAGGGGTAGTG
GGAGGCGTTGAACGGGCCCGCGATCTCGTAGAAGAGCGGGGGGAGTGCTA
TTATCACGTTCTACTACCTTGATATGCATGCCGGAGACGGAGCATATTAC
GCGAAGGCCATTGAAGCAAACACCGATTAATGCGGATAAGGAGCCGTTGG
ATAAGAGTGCGCGAAATTTGATCTTGGCGAGATGTGTTTCAAGGATGGTT
GTGGAGGATCTTACAGGAGACATGTACAGGGAGCTTCTACAGTATCTCGG
AAGTTCCTGCAAGAAAGAATAAGAATGAATACGACGAAAATA
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Coding sequence (CDS) from alignment at CM002459.1:1232198..1233039-

>rna2793 ID=rna2793|Name=rna2793|organism=Nannochloropsis gaditana|type=CDS|length=366bp|location=Sequence derived from alignment at CM002459.1:1232198..1233039- (Nannochloropsis gaditana)
ATGAGGTATCCGCAGAGCGAGGTGTTAAATCGTCCAGCGATCTCGCGCAA
GACCGTTGGCGGGAAGCCGATGTCGAAGATAGAGACGTGCGTGAAGGGGT
CCAGCGTTCGGGTTTCCGTCACGTCGCCGTTTAGGATGAAGATTTTGTGG
TTAATGCGGTTTGCTCCCGCGACCATGCCTGGTGCTGCCCGGGATGCCTG
CATCTGCCTCCGCGTCCACCGCTGCGGCTGCCTGGGCCTATCGTTATTGA
TCTGCTCCAGCAAGCTCTTGATTGAGCTCTGGCCGATCAAGTTCAAGCCT
GGCTTGAAGAGCGGGTCCACAAGCCTCCGGGCGGGCGGTGCGGGGAGGGG
GTTGGCGCGTTTGTAG
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Synonyms
Publications