rna2792, rna2792 (mRNA) Nannochloropsis gaditana

Overview
Namerna2792
Unique Namerna2792
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1300
Alignment locationCM002459.1:1230153..1231996 -

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Properties
Property NameValue
Productcysteine proteinase
Orig transcript idgnl|cribi|Naga_100288g3.9959.mrna
Orig protein idgnl|cribi|Naga_100288g3.9959
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1230153..1231996 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100288g3gene2672Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27891.1cds2784Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2792rna2792-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2792 ID=rna2792|Name=rna2792|organism=Nannochloropsis gaditana|type=mRNA|length=1300bp
CCTTCCCGGTTTTAAAATGCAGTCGGACTTGATGGCAAGCCTGTGTTGGT
TGTTCTGAAAACCGTGTTCTCCGTTCCATTTGCACCACGAACAGCAACAT
GGCCATCGTCGATTCCACCACCAACCCCGCGCCGACCAACACCAAAAAGG
GCCAAAAAAAGAGCGCGCCTGCGATTCCCGTGGAGACGGCGCCGGTGGGT
GAGACAGCCCCCGATGTCGTGTCTAACGCCGACAAACAAGAGGAGACAAC
CTCCACAGTCGAAGCAACCATTGCCCCCGAGGAGGATGCAGACCTCACCA
TGGAATTGCCCTATGTGGCCAAGGTAGCTTCAGATACCACTTCTGCGGTG
TTAGCCGAGTCGTATTTGTTGACGCAACGCGGTCTGGAGACACTCAAAGC
CATCGACAGCCGTGTAGGGGTGACGAAGCGTCTCATGGACTTGGACGAGA
GCATGGGGGTGAGCAAAAGGGTGCTCGCCACCGCGGAGCATTTGGGTGCC
CGTACGCAAGCCCTTGACGCGAAGTACCACGTGACCGCGAAGATCAAAGA
TACAGCTGAAAGCGTGAGCGAGAAGGCGCTCGAATACCCGTATGTGGCCT
CCGGGGCGGAAAAAACCGGAAAGGCTGTCAAATTCGTCGAGCGATGGAGC
CGTTCTACTTTGGCCAAGGCCCGCTCCAAGGTGGAAACGCGTAAGAACAA
GAAGGGGAAAACGGCCTCGCCCGTGCCGTTGACAGGAGAGGAGGAGGTGC
CCATCGACCTGGCGCGCAAGTAGTTGTGACGGGCTGGCCGCCCCTCGGGG
CTCGCACGAAGGAAGACACTTGCCATGCACGGGCATTGACGTGTGTCGAG
GATAGAGTTAGGTTATGTGTTTGAAGGATCTACGAGACGGCTTTCAAAAT
TAGCACGGAGGGCAGTAGCATCATTTGCCACCACACCACACGCTAGCTGC
CAAGGGTCACCAGCCAACAAACTGCTGGCTCCCAATTTTGAGACTTACAT
GACGCTGACGATCACGGGGATTACTGGAAAAAATCACGGAGGAAGGATGG
ATGAGGGCTTACGTTTATGTGTCGTGGGACGATAAGACCTTCTCTCTAAG
GGGTGGAGCAAGGCGGAACCCTTTGACGACATTCGTGAGCTCTGGGCATC
AAAGATGGGTTTGGCTTAGAGAGAGAGGCAATGATGCTGAAAAGGAGGCC
AGAGAGCGAACGCTAGAAATTCATGTCTTACCCGTTTAGTGAGCGACCAT
GAGCGCACCGTATCGTTCAGGAGCAGGTCACAACGATCACTCCTCTCCTA
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protein sequence of rna2792

>rna2792-protein ID=rna2792-protein|Name=rna2792|organism=Nannochloropsis gaditana|type=polypeptide|length=484bp
MLLFSGSCLHWSPVLASLSAFLFVFQVVAEPSIEALAVREFEGWMSHHDK
VYSSAGEREQRFQNWLQAYERVRRHAHPHYSLGLNEMSDWSPKEHAKRLH
RRDRHGNHMLGFNLVAGWRRRFVEEFGSNHPRIFDGRSDPPPPPEIDWRD
EKRNPKRVHGVTRIRNQYYCGGCYSLGVVAAVEGVVAADRGFLNELSDEQ
ILDCDRVNHGCEGGDPQQALQYVMTEPLVLAADYPFDAGAGNVGECAAKQ
APPASQIRSYLYVQPCDERVLMQAVARSPVVVAIDASCDAFLQYAGGVLS
DSCVNVRLGTRAVDGVCEDALNHAVAIVGYGTDEKTGLDYWIIKNSWGVT
WGEKGFARVMRGESEATGWTTKCGLGCLEYYNFLPTGGVAFMNGTLQSDD
NFLHGVEGTASQAKENFGDMMLGLACALAVCLTILAAWGGQRQLRRMNSQ
EKESTVEDTGRANTFLREPLLQLEEEKKSNSVEN
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mRNA from alignment at CM002459.1:1230153..1231996-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2792 ID=rna2792|Name=rna2792|organism=Nannochloropsis gaditana|type=mRNA|length=1844bp|location=Sequence derived from alignment at CM002459.1:1230153..1231996- (Nannochloropsis gaditana)
CTTCTCATATTTTCTATGTCCACATCAGATTTACTTTAAGGTTATTCCAT
GCTTTTATTTTCTGGAAGTTGCTTGCATTGGAGTCCTGTGTTGGCCTCTC
TGTCGGCCTTTCTTTTCGTATTTCAGGTCGTGGCGGAACCTAGTATTGAA
GCCTTAGCTGTAAGGGAATTTGAAGGATGGATGTCGCATCATGACAAGGT
TTATTCCTCTGCAGGTGAAAGAGAGCAGCGCTTTCAAAATTGGTTGCAGG
CTTACGAAAGGGTGCGTCGTCATGCTCATCCCCACTATTCGCTGGGACTC
AACGAGATGAGCGATTGGAGTCCCAAAGAACACGCCAAACGCTTGCATCG
ACGGGATCGTCATGGAAATCACATGCTTGGGTTTAACTTAGTAGCGGGAT
GGCGACGGAGGTTTGTGGAGGAGTTTGGAAGCAATCATCCTCGAATTTTT
GACGGCCGATCCGACCCGCCACCCCCGCCTGAAATTGACTGGAGGGATGA
GAAGCGGAACCCCAAGCGTGTGCATGGTGTGACACGCATACGCAATCAAT
ATTACTGCGGTGGATGTTACAGTTTGGGGGTGGTGGCGGCGGTGGAGGGT
GTGGTAGCAGCCGATCGAGGCTTTCTTAATGAGTTGAGCGACGAGCAAAT
TTTGGACTGTGATAGAGTCAATCATGGGTGCGAAGGTGGTGACCCTCAGC
AGGCTTTGCAGTACGTCATGACTGAGCCTTTAGTACTAGCGGCTGACTAT
CCTTTTGACGCAGGTGCCGGAAATGTGGGTGAGTGCGCAGCAAAGCAGGC
GCCGCCTGCATCTCAGATCCGAAGTTACTTGTACGTGCAACCCTGTGATG
AAAGAGTTCTTATGCAAGCTGTGGCTAGGAGCCCTGTGGTAGTAGCAATC
GATGCCTCCTGTGACGCGTTTTTGCAATACGCGGGAGGGGTGCTTTCGGA
CTCTTGCGTGAACGTGAGACTTGGCACGAGGGCCGTTGATGGTGTGTGTG
AGGATGCTCTTAACCATGCAGTGGCCATCGTCGGGTACGGAACCGACGAG
AAAACTGGCTTAGACTACTGGATCATCAAAAATAGCTGGGGAGTGACTTG
GGGAGAGAAAGGTTTTGCTCGCGTGATGCGAGGTGAATCCGAGGCAACTG
GTTGGACGACAAAGTGCGGTTTAGGGTGCTTGGAATACTACAATTTCCTG
CCCACCGGCGGGGTCGCGTTCATGAATGGGACACTTCAGTCGGATGATAA
CTTCCTACATGGAGTAGAAGGGACCGCAAGTCAAGCGAAGGAAAATTTCG
GGGATATGATGTTGGGGTTGGCTTGCGCCTTGGCAGTCTGCCTCACTATT
CTGGCTGCATGGGGAGGGCAGCGCCAGCTCCGACGTATGAACTCACAAGA
AAAAGAAAGTACAGTCGAAGACACTGGTCGTGCCAACACTTTCTTGAGAG
AACCTTTGCTGCAATTAGAAGAGGAGAAGAAGTCCAATTCTGTTGAAAAT
TAAGAAAACACAAATGCAGCTATAAGGACTGAAGGACTAACATGTACATG
ATGTATATTGAAACCATCTTTCGCCATCATCGTTCCCGAGAAATGAAGTA
AATAGCACTCTCAAATACATCGTTGACCACAGAATATCATTCACCAGGAG
CTTATCACCTGAAGTTTTCAGTGTGATGGCTGTCGGGCATGTCTTCTGGT
GCAGCGATGGAAGAGAATTAAGCAGGTGCCAATGGTAAAGGCTTGAGGGA
ATTACGTTTGTATCACTCACCGGGCGATCGGTACTTCTGGTGTGGCAGCT
TCTGCTGCTTATTGTTTAAGAAGTATTTACGACGATCCCAGTGC
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Coding sequence (CDS) from alignment at CM002459.1:1230153..1231996-

>rna2792 ID=rna2792|Name=rna2792|organism=Nannochloropsis gaditana|type=CDS|length=1455bp|location=Sequence derived from alignment at CM002459.1:1230153..1231996- (Nannochloropsis gaditana)
ATGCTTTTATTTTCTGGAAGTTGCTTGCATTGGAGTCCTGTGTTGGCCTC
TCTGTCGGCCTTTCTTTTCGTATTTCAGGTCGTGGCGGAACCTAGTATTG
AAGCCTTAGCTGTAAGGGAATTTGAAGGATGGATGTCGCATCATGACAAG
GTTTATTCCTCTGCAGGTGAAAGAGAGCAGCGCTTTCAAAATTGGTTGCA
GGCTTACGAAAGGGTGCGTCGTCATGCTCATCCCCACTATTCGCTGGGAC
TCAACGAGATGAGCGATTGGAGTCCCAAAGAACACGCCAAACGCTTGCAT
CGACGGGATCGTCATGGAAATCACATGCTTGGGTTTAACTTAGTAGCGGG
ATGGCGACGGAGGTTTGTGGAGGAGTTTGGAAGCAATCATCCTCGAATTT
TTGACGGCCGATCCGACCCGCCACCCCCGCCTGAAATTGACTGGAGGGAT
GAGAAGCGGAACCCCAAGCGTGTGCATGGTGTGACACGCATACGCAATCA
ATATTACTGCGGTGGATGTTACAGTTTGGGGGTGGTGGCGGCGGTGGAGG
GTGTGGTAGCAGCCGATCGAGGCTTTCTTAATGAGTTGAGCGACGAGCAA
ATTTTGGACTGTGATAGAGTCAATCATGGGTGCGAAGGTGGTGACCCTCA
GCAGGCTTTGCAGTACGTCATGACTGAGCCTTTAGTACTAGCGGCTGACT
ATCCTTTTGACGCAGGTGCCGGAAATGTGGGTGAGTGCGCAGCAAAGCAG
GCGCCGCCTGCATCTCAGATCCGAAGTTACTTGTACGTGCAACCCTGTGA
TGAAAGAGTTCTTATGCAAGCTGTGGCTAGGAGCCCTGTGGTAGTAGCAA
TCGATGCCTCCTGTGACGCGTTTTTGCAATACGCGGGAGGGGTGCTTTCG
GACTCTTGCGTGAACGTGAGACTTGGCACGAGGGCCGTTGATGGTGTGTG
TGAGGATGCTCTTAACCATGCAGTGGCCATCGTCGGGTACGGAACCGACG
AGAAAACTGGCTTAGACTACTGGATCATCAAAAATAGCTGGGGAGTGACT
TGGGGAGAGAAAGGTTTTGCTCGCGTGATGCGAGGTGAATCCGAGGCAAC
TGGTTGGACGACAAAGTGCGGTTTAGGGTGCTTGGAATACTACAATTTCC
TGCCCACCGGCGGGGTCGCGTTCATGAATGGGACACTTCAGTCGGATGAT
AACTTCCTACATGGAGTAGAAGGGACCGCAAGTCAAGCGAAGGAAAATTT
CGGGGATATGATGTTGGGGTTGGCTTGCGCCTTGGCAGTCTGCCTCACTA
TTCTGGCTGCATGGGGAGGGCAGCGCCAGCTCCGACGTATGAACTCACAA
GAAAAAGAAAGTACAGTCGAAGACACTGGTCGTGCCAACACTTTCTTGAG
AGAACCTTTGCTGCAATTAGAAGAGGAGAAGAAGTCCAATTCTGTTGAAA
ATTAA
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Synonyms
Publications