rna2791, rna2791 (mRNA) Nannochloropsis gaditana

Overview
Namerna2791
Unique Namerna2791
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2977
Alignment locationCM002459.1:1228051..1229350 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100288g2.9957.mrna
Orig protein idgnl|cribi|Naga_100288g2.9957
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1228051..1229350 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100288g2gene2671Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27889.1cds2783Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2791rna2791-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2791 ID=rna2791|Name=rna2791|organism=Nannochloropsis gaditana|type=mRNA|length=2977bp
ATGGTCTCGGGGGAGGAGGTAGTGGTGGGAGAAGGGGGGGAAGGAAAGAG
CGTAGAAAGCGAGGAGGCAGGCGAGGAGGGAAAGGGGGGGGTGGCTTCCC
GGGAGGAGAGGGAGGGGGAAATCGAGGAGGAGGAGATGATGGTGGACGAC
GAAGCGGAAGAAGGAGGAGAAGAGAAGGAAAGGGAAAAAGGGGGGACCGG
CGTCCGCGTCGTGGACAGGCAGGAAGGGCCGGTGCCGTTGTCTCCGACGC
CGGCCAAAGGCTGGGAGGGAGGGGCGCTTGTTCTTCCCGCTACTCTTCCG
GCGAAGATGAGGGTAGAGGGTGGCACGCTCGCTCCTTCTCCCCAGGCCGC
CTCGAAACCAGGGTGGGAGACGGTACAATGGAGGGGGGGGGAAAGCAAAG
GGGAGGGGCAGGCTCTGTGGACCGGCGTCATGGGGCAAGCAGGCCTGGTC
CGCCTCTCTGAGGGAGGGGAGGAGGGAGGGAGGGAAGGAGGGTGGACGGG
CGTGCAGGAGACGCTGCTTGCAGACGACGGCGGGGAACTGGTGCCCACAG
ACGACGCCGCGCGAGGGGGGTGGACGGGGGGCGCATCCCTCCCTTCCTGC
CCTTCCCCCGAGTCCTCAACCCCTCAGGACCGGAGGCCCCCGACGGCAAG
CGCCATGCCCCCACCGGCCACAGCCAAGGTGCCGATCGCTCGCCTCAGGC
TCCCTCCCGACTGGGCGGTGCTGACCGTCTCCCCCCTGAAAGCCCCGCCG
GGCTCGCCCTTCCCCACCTACCACCACCTCCACCTCCCCCCCCCCTCCTC
CTCGTCCTCCGCCGATTCCTGCCCCACCAAGCGCGCCCCGCTCTGCGTGG
GTCTTGCTGCCCCGTCCTCTTACCTCCCGGACCTCCTCCCTTTCCTTCCC
ACCGCCTTCGTCTACAAAGGGGCAAGTCGACTCAGCGTGGGCCAGGACTA
CCTCCGGTCCTGCCTCGCCTCGGCCGCCCGCCACCCGACCCAATACCTGT
TCCGACCGATCCGTATGTACCCCATCCATGTAAATGAGGATGGGAAAGAA
GGGCCTTGGCACGCCCTCTGCCGGAGCCTGGCCCACAAGGGGGGGGAGGA
GAAGATGGGCCGCTTGACCGCCTGGAGGGGGACGGGCGGGCAGGCGGGCA
GGCAGGACCGGTGGTTGGACGGTCGCCTCAAGTTCCACGTCCTGTTGAAC
TCGACCTTGCGAGATTTCTGGCGAGAGTTGGGCTTGACGGGGTGGGGGGA
AGGCGGGGAGACGCAGGAAGGCCTGTCCGTGGTCGTCCACTTCAAGAAGG
AGAGGGGCCGGAGGGCGCGGGGAGAGGATGCGAAGACCCTGAGTGGGCCG
TCGAGCGCGAGGGGGGAGGCGACAAAGGGGCTCGGCATGACCTGGTCCTC
CAAGAGGAGGCCATTACCGCATTTCCCGGTGCGGGAGGGACCGGCGGAGG
GCGGGAAGGAGGGCGGAAAGGAGGTGCTTTGGAAGGAAGGAGGGGTGGAG
AGCGAGGCGCCGAGGCCCCAACCTGTGGACCCGCGGCGCGTCCATGCCAC
GTCACTCACCTCCTTAGATTCCATGACGTCCTCCCCTGCCGGAAAGGGGG
GGGGGAGCCCCCGCACCCTCCCTCCCCCCGCCCTCGTGGCGTCCCACCCC
AGGAGCTCTGCCTTTCACCGACCTGCTGCCCTCACCTGCAAGAGCCCAAG
GAATGACACCGGTGCGGCGTTTTCAGGGCAGGATGGGGAGCAACGGAAAG
ATCCTCCGTTTGTTCCCCTTGCTCCGCCACTTCCTGTCTCCCTTCCTACT
TCCCGCCCTCCCTCATCTTCCCGGCTGCTTTCCCCCCAAGGTCCTCCTCC
AACGGCGTCCCTCCCTCCGCCCGCCTTTGTCTCGCCGGAGATCCTGGTCA
AGATCGACAAAACCATAGAATTCTTGGGCGGCTCCATGATCCCTCTGAAA
ACACTCCAGGAACTGACCGAACAGATCCTCGCGGACCCGGGCAGGCACCC
AGACATGCATTTTGTCTTGGACGGCCACATCGGCAACCCCTATTTCATGG
AACGACTCGAACGTCGTCTGGCGGAAACGCCTCCCCTCCCTCCCTCCCTC
CCTCCCTCCCTGAGCCCCGAGCACGAGAGTGGCCCCAGGCCCTCGCCGTT
ATCGCCCGCCCCCTTGTCCCACCTAGCCCACGCCATCCCCTCGACGACCA
GGGATACACCCTGTTCCGTTGCCAGCCCCCCCCCCACCCCCACGGTAGGC
AGACGAAGGGCGGGCAGGGAGGACCAGGCAGGAAGAGGGGAAGCGCAGTG
GGAGCGGGGAGAGGGACCGGTGGGATTTAAAACGGCGTTCCCCCACCTTC
GGTAAAGAGTTAATGCGGTGCGGTCGTGAATAGCACCGTGACTTGCAAAG
AAGAGGTCGAAATGAAGTCGAGACGGGGATGTCAGGTGCCTGACGGACTG
ACTCGCTAAAAAGGACTCGGACGCTAGCAAGGAGAAGGGGAGGAAGATCA
TCCAGGGAATAGGTCGATAATAAGATAAGGGCAGCGAAATGGCACAAGAA
AGGGACGGGGGGAAGTAAAGAGAAAAGAAGGGAGGGGCCTGTCGATTTGC
AAAAAGGCAAGCACACGGATATGGTGGAATGGAGGGGCGAACGTGTCCCT
CAGGGTCCTTACGTAGTAAAGGAGACAACCACAGAATGAAGTCATGCGAA
CGGTCGAATGAGGGAGCCATGACTTACACAGGTAGCTTCGCGTGTGCATT
GAATTTTGCACAGGAGCCGCGTCAAGATGTAAAGGGAAGTCAGGAAGTTG
AAAGATGTTGCTGAGTGCTTACACACCCGCCTATGTGTATTAAGATGATG
TCAGCCGTGCGTGGTCGGCTTCGGTACGGTAAATGGGTTGGAAAATAGGA
ATGATCCATTAATTGATGTGACATTTGAATAAAATCTGCAGCAAGAAAAG
AAAACAAAAAATGTTTCGTAGGAGAGG
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protein sequence of rna2791

>rna2791-protein ID=rna2791-protein|Name=rna2791|organism=Nannochloropsis gaditana|type=polypeptide|length=224bp
MAIVDSTTNPAPTNTKKGQKKSAPAIPVETAPVGETAPDVVSNADKQEET
TSTVEATIAPEEDADLTMELPYVAKVASDTTSAVLAESYLLTQRGLETLK
AIDSRVGVTKRLMDLDESMGVSKRVLATAEHLGARTQALDAKYHVTAKIK
DTAESVSEKALEYPYVASGAEKTGKAVKFVERWSRSTLAKARSKVETRKN
KKGKTASPVPLTGEEEVPIDLARK
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mRNA from alignment at CM002459.1:1228051..1229350-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2791 ID=rna2791|Name=rna2791|organism=Nannochloropsis gaditana|type=mRNA|length=1300bp|location=Sequence derived from alignment at CM002459.1:1228051..1229350- (Nannochloropsis gaditana)
CCTTCCCGGTTTTAAAATGCAGTCGGACTTGATGGCAAGCCTGTGTTGGT
TGTTCTGAAAACCGTGTTCTCCGTTCCATTTGCACCACGAACAGCAACAT
GGCCATCGTCGATTCCACCACCAACCCCGCGCCGACCAACACCAAAAAGG
GCCAAAAAAAGAGCGCGCCTGCGATTCCCGTGGAGACGGCGCCGGTGGGT
GAGACAGCCCCCGATGTCGTGTCTAACGCCGACAAACAAGAGGAGACAAC
CTCCACAGTCGAAGCAACCATTGCCCCCGAGGAGGATGCAGACCTCACCA
TGGAATTGCCCTATGTGGCCAAGGTAGCTTCAGATACCACTTCTGCGGTG
TTAGCCGAGTCGTATTTGTTGACGCAACGCGGTCTGGAGACACTCAAAGC
CATCGACAGCCGTGTAGGGGTGACGAAGCGTCTCATGGACTTGGACGAGA
GCATGGGGGTGAGCAAAAGGGTGCTCGCCACCGCGGAGCATTTGGGTGCC
CGTACGCAAGCCCTTGACGCGAAGTACCACGTGACCGCGAAGATCAAAGA
TACAGCTGAAAGCGTGAGCGAGAAGGCGCTCGAATACCCGTATGTGGCCT
CCGGGGCGGAAAAAACCGGAAAGGCTGTCAAATTCGTCGAGCGATGGAGC
CGTTCTACTTTGGCCAAGGCCCGCTCCAAGGTGGAAACGCGTAAGAACAA
GAAGGGGAAAACGGCCTCGCCCGTGCCGTTGACAGGAGAGGAGGAGGTGC
CCATCGACCTGGCGCGCAAGTAGTTGTGACGGGCTGGCCGCCCCTCGGGG
CTCGCACGAAGGAAGACACTTGCCATGCACGGGCATTGACGTGTGTCGAG
GATAGAGTTAGGTTATGTGTTTGAAGGATCTACGAGACGGCTTTCAAAAT
TAGCACGGAGGGCAGTAGCATCATTTGCCACCACACCACACGCTAGCTGC
CAAGGGTCACCAGCCAACAAACTGCTGGCTCCCAATTTTGAGACTTACAT
GACGCTGACGATCACGGGGATTACTGGAAAAAATCACGGAGGAAGGATGG
ATGAGGGCTTACGTTTATGTGTCGTGGGACGATAAGACCTTCTCTCTAAG
GGGTGGAGCAAGGCGGAACCCTTTGACGACATTCGTGAGCTCTGGGCATC
AAAGATGGGTTTGGCTTAGAGAGAGAGGCAATGATGCTGAAAAGGAGGCC
AGAGAGCGAACGCTAGAAATTCATGTCTTACCCGTTTAGTGAGCGACCAT
GAGCGCACCGTATCGTTCAGGAGCAGGTCACAACGATCACTCCTCTCCTA
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Coding sequence (CDS) from alignment at CM002459.1:1228051..1229350-

>rna2791 ID=rna2791|Name=rna2791|organism=Nannochloropsis gaditana|type=CDS|length=675bp|location=Sequence derived from alignment at CM002459.1:1228051..1229350- (Nannochloropsis gaditana)
ATGGCCATCGTCGATTCCACCACCAACCCCGCGCCGACCAACACCAAAAA
GGGCCAAAAAAAGAGCGCGCCTGCGATTCCCGTGGAGACGGCGCCGGTGG
GTGAGACAGCCCCCGATGTCGTGTCTAACGCCGACAAACAAGAGGAGACA
ACCTCCACAGTCGAAGCAACCATTGCCCCCGAGGAGGATGCAGACCTCAC
CATGGAATTGCCCTATGTGGCCAAGGTAGCTTCAGATACCACTTCTGCGG
TGTTAGCCGAGTCGTATTTGTTGACGCAACGCGGTCTGGAGACACTCAAA
GCCATCGACAGCCGTGTAGGGGTGACGAAGCGTCTCATGGACTTGGACGA
GAGCATGGGGGTGAGCAAAAGGGTGCTCGCCACCGCGGAGCATTTGGGTG
CCCGTACGCAAGCCCTTGACGCGAAGTACCACGTGACCGCGAAGATCAAA
GATACAGCTGAAAGCGTGAGCGAGAAGGCGCTCGAATACCCGTATGTGGC
CTCCGGGGCGGAAAAAACCGGAAAGGCTGTCAAATTCGTCGAGCGATGGA
GCCGTTCTACTTTGGCCAAGGCCCGCTCCAAGGTGGAAACGCGTAAGAAC
AAGAAGGGGAAAACGGCCTCGCCCGTGCCGTTGACAGGAGAGGAGGAGGT
GCCCATCGACCTGGCGCGCAAGTAG
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Synonyms
Publications