rna2790, rna2790 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2790
Unique Name	rna2790
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	965
Alignment location	CM002459.1:1225083..1228059 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100288g1.9955.mrna
Orig protein id	gnl\|cribi\|Naga_100288g1.9955
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:1225083..1228059 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100288g1	gene2670	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2790	rna2790-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27887.1	cds2782	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:1225083..1228059+
coding sequence from alignment at CM002459.1:1225083..1228059+

mRNA sequence

>rna2790 ID=rna2790|Name=rna2790|organism=Nannochloropsis gaditana|type=mRNA|length=965bp
TCTTCCACCGCCGTGGTGTACGAGCACCTGGAAAACCTCTGGGTGGGCGT
GACGGAGGCAGCCCTCGATCGTCTCATGGACGAGCCGTCGACGCCAGGGA
CGAGGAAGGCGGTGGAAATTTTGGCGCGAACCGTGTGTGGGACCGAGCCT
GGGGCCCACAGGACGCGGCTGATGAGGATGGAGGAGCGGTTGCGGCCGTT
GCTGGCGGGCGAAGGGGAGGGAACGGAGGAGGAGAGGATTGGAGAGGGGG
AGGACGAAAGCGAGGAGGAAGGTGGGAAGGTGCATAGGGACGAAGGGAGG
AGAAGAGGGCACAAGGCCGGGGCGGGGCAGGAGGGATGGGTGGGGAGGGC
GGAGGGACCCGAAGGGGGTTGACGGCGTGCGTGTGACGTTGGTGGTGGGG
GGGGGGGGGAGGGCGGACAAATTTGTGGGAAGCAATGAGATAGTTTGAAA
ACGTCCCAGGCGTTGGGAGCCCTCGTCGGGACGGCGCAGGAATGCACGCT
GGGGCAGGGGAGGAGGAAGGTCCGAGTGAAAAGTGTAAGAGGGGCCGAGG
TGACTCAGCGAAGCAAGAGAATGACAATGTATGGCACCGGGGAAGCGAGG
ACACATGCACTCCCCCAGAGAATGCGGAGTGAAGCCAAAGGACTGCGCGG
GGTGGGTGGAGAGCGCGAGAAGGCAAGCTGCCATAGCGGAAGACGGAGTC
GGAGCAGGCGACAGCCATGGCGGTGAAGAACGGCAGCAGCAACACAGAAA
AAAACAGTGACATTAAAGCTTTTAAATGAAATCATGTACGGTAGTGCCCC
GGGCAAGGTCTATCTACATCCTCCAATCGCCGTTGCTTTACGTCCGAGGC
TGGGAGGTGGGGGGGGGAGGGGGGGAAAGGCAACGAAGACGAAGAAAGCC
TACAACCTCATGGAGTGAGGTCGTATTCCCCATTTTCCTAGAGGACATAG
GATGACGCATTCATC

protein sequence of rna2790

>rna2790-protein ID=rna2790-protein|Name=rna2790|organism=Nannochloropsis gaditana|type=polypeptide|length=784bp
MVSGEEVVVGEGGEGKSVESEEAGEEGKGGVASREEREGEIEEEEMMVDD
EAEEGGEEKEREKGGTGVRVVDRQEGPVPLSPTPAKGWEGGALVLPATLP
AKMRVEGGTLAPSPQAASKPGWETVQWRGGESKGEGQALWTGVMGQAGLV
RLSEGGEEGGREGGWTGVQETLLADDGGELVPTDDAARGGWTGGASLPSC
PSPESSTPQDRRPPTASAMPPPATAKVPIARLRLPPDWAVLTVSPLKAPP
GSPFPTYHHLHLPPPSSSSSADSCPTKRAPLCVGLAAPSSYLPDLLPFLP
TAFVYKGASRLSVGQDYLRSCLASAARHPTQYLFRPIRMYPIHVNEDGKE
GPWHALCRSLAHKGGEEKMGRLTAWRGTGGQAGRQDRWLDGRLKFHVLLN
STLRDFWRELGLTGWGEGGETQEGLSVVVHFKKERGRRARGEDAKTLSGP
SSARGEATKGLGMTWSSKRRPLPHFPVREGPAEGGKEGGKEVLWKEGGVE
SEAPRPQPVDPRRVHATSLTSLDSMTSSPAGKGGGSPRTLPPPALVASHP
RSSAFHRPAALTCKSPRNDTGAAFSGQDGEQRKDPPFVPLAPPLPVSLPT
SRPPSSSRLLSPQGPPPTASLPPPAFVSPEILVKIDKTIEFLGGSMIPLK
TLQELTEQILADPGRHPDMHFVLDGHIGNPYFMERLERRLAETPPLPPSL
PPSLSPEHESGPRPSPLSPAPLSHLAHAIPSTTRDTPCSVASPPPTPTVG
RRRAGREDQAGRGEAQWERGEGPVGFKTAFPHLR

mRNA from alignment at CM002459.1:1225083..1228059+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2790 ID=rna2790|Name=rna2790|organism=Nannochloropsis gaditana|type=mRNA|length=2977bp|location=Sequence derived from alignment at CM002459.1:1225083..1228059+ (Nannochloropsis gaditana)
ATGGTctcgggggaggaggtagtggtgggagaagggggggaaggaaagag
cgtagaaagcgaggaggcaggcgaggagggaaaggggggggtggcttccc
gggaggagagggagggggaaatcgaggaggaggagatgatggtGGACGac
gaagcggaagaaggaggagaagagaaggaaagggaaaaaggggggaccGG
CGTCCGCGTCGTGGACAGGCAGGAAGGGCCGGTGCCGTTGTCTCCGACGC
CGGCCaaaggctgggagggaggggcgcttgTTCTTCCCGCTACTCTTCCG
GCGAAGATGAGGGTAGAGGGTGGCAcgctcgctccttctccccaggCCGC
CTCGAAACCAGGGTGGGAGACGGTAcaatggagggggggggaaagcaaag
gggaggggcaggctCTGTGGACCGGCGTCATGGGGCAAGCAGGCCTGGTC
CGCCTctctgagggaggggaggagggagggagggaaggagggtggacgGG
CGTGCAGGAGACGCTGCTTGCAGACGACGGCGGGGAACTGGTGCCCACAG
ACGACGCCGCGCGAGGGGGGTGGACGGGGGgcgcatccctcccttcctgc
ccttcccccgaGTCCTCAACCCCTCAGGACCGGAGGCCCCCGACGGCAAG
CGCCATGCCCCCACCGGCCACAGCCAAGGTGCCGATCGCTCGCCTCAGGC
TCCCTCCCGACTGGGCGGTGCTGACCGTCTCCCCCCTGAAAGCCCCGCCG
GGctcgcccttccccacctaccaccacctccacctcccccccccctcctc
ctcgtcctccgccgaTTCCTGCCCCACCAAGCGCGCCCCGCTCTGCGTGG
GTCTTGCTGCCCCGTCCTCTTACCTCccggacctcctccctttccttccc
accgccttcgTCTACAAAGGGGCAAGTCGACTCAGCGTGGGCCAGGACTA
CCTCCGGTCCTGCCTCGCCTCGGCCGCCCGCCACCCGACCCAATACCTGT
TCCGACCGATCCGTATGTACCCCATCCATGTAAatgaggatgggaaagaa
gggccTTGGCACGCCCTCTGCCGGAGCCTGGCccacaaggggggggagga
gaagatgggcCGCTTGACCgcctggagggggacgggcgggCAGGCGGGCA
GGCAGGACCGGTGGTTGGACGGTCGCCTCAAGTTCCACGTCCTGTTGAAC
TCGACCTTGCGAGATTTCTGGCGAGAGTTGGGCTtgacggggtgggggga
aggcggggagacgCAGGAAGGCCTGTCCGTGGTCGTCCActtcaagaagg
agaggggccggagggcgcggggagaggatgcgAAGACCCTGAGTGGGCCG
TCGAgcgcgaggggggaggcgacaaAGGGGCTCGGCATGACCTGGTCCTC
CAAGAGGAGGCCATTACCGCATTTCCCGGTGCGGGAGGGaccggcggagg
gcgggaaggagggcggaaaggaggtgctttggaaggaaggaggggtggag
agcGAGGCGCCGAGGCCCCAACCTGTGGACCCGCGGCGCGTCCATGCCAC
GTCACTCACCTCCTTAGATTCCATGACGTCCTCCCCTGccggaaaggggg
gggggagcccccgcaccctccctccccccgccctcgtggCGTCCCACCCC
AGGAGCTCTGCCTTTCACCGACCTGCTGCCCTCACCTGCAAGAGCCCAAG
GAATGACACCGGTGCGGCGTTTTCAGGGCAGGATGGGGAGCAACGGAAAG
ATCCTCCGTTTGTTCCCCTTGCTCCGCCACTTCCTGTCTCCCTTCCtact
tcccgccctccctcatcttcccggctgctttccccccaaggtcctcctcc
aacggcgtccctccctccgcccgccttTGTCTCGCCGGAGATCCTGGTCA
AGATCGACAAAACCATAGAATTCTTGGGCGGCTCCATGATCCCTCTGAAA
ACACTCCAGGAACTGACCGAACAGATCCTCGCGGACCCGGGCAGGCACCC
AGACATGCATTTTGTCTTGGACGGCCACATCGGCAACCCCTATTTCATGG
AACGACTCGAACGTCGTCTGGCGGAaacgcctcccctccctccctccctc
cctccctccctgagccCCGAGCACGAGAGTGGCCCCAGGCCCTCGCCGTT
atcgcccgcccccttgtCCCACCTAGCCCACGCCATCCCCTCGACGACCA
GGGATACACCCTGTTCCGttgccagccccccccccacccccacggTAGGC
AGAcgaagggcgggcagggaggaccaggcaggaagaggggaagcgcagtg
ggagcggggagagggaccggTGGGATTTAAAACGGCGTTCCCCCACCTTC
GGTAAAGAGTTAATGCGGTGCGGTCGTGAATAGCACCGTGACTTGCAAAG
AAGAGGTCGAAATGAAGTCGAGACGGGGATGTCAGGTGCCTGACGGACTG
ACTCGCTAAAAAGGACTCGGACGCtagcaaggagaaggggaggaagatca
TCCAGGGAATAGGTCGATAATAAGATAAGGGCAGCGAAATGGCACAAGaa
agggacggggggaagtaaagagaaaagaagggaggggcctgTCGATTTGC
AAAAAGGCAAGCACACGGATATGGTGGAATGGAGGGGCGAACGTGTCCCT
CAGGGTCCTTACGTAGTAAAGGAGACAACCACAGAATGAAGTCATGCGAA
CGGTCGAATGAGGGAGCCATGACTTACACAGGTAGCTTCGCGTGTGCATT
GAATTTTGCACAGGAGCCGCGTCAAGATGTAAAGGGAAGTCAGGAAGTTG
AAAGATGTTGCTGAGTGCTTACACACCCGCCTATGTGTATTAAGATGATG
TCAGCCGTGCGTGGTCGGCTTCGGTACGGTAAATGGGTTGGAAAATAGGA
ATGATCCATTAATTGATGTGACATTTGAATAAAATCTGCAgcaagaaaag
aaaacaaaaaatGTTTCGTAGGAGAGG

Coding sequence (CDS) from alignment at CM002459.1:1225083..1228059+

>rna2790 ID=rna2790|Name=rna2790|organism=Nannochloropsis gaditana|type=CDS|length=2355bp|location=Sequence derived from alignment at CM002459.1:1225083..1228059+ (Nannochloropsis gaditana)
ATGGTctcgggggaggaggtagtggtgggagaagggggggaaggaaagag
cgtagaaagcgaggaggcaggcgaggagggaaaggggggggtggcttccc
gggaggagagggagggggaaatcgaggaggaggagatgatggtGGACGac
gaagcggaagaaggaggagaagagaaggaaagggaaaaaggggggaccGG
CGTCCGCGTCGTGGACAGGCAGGAAGGGCCGGTGCCGTTGTCTCCGACGC
CGGCCaaaggctgggagggaggggcgcttgTTCTTCCCGCTACTCTTCCG
GCGAAGATGAGGGTAGAGGGTGGCAcgctcgctccttctccccaggCCGC
CTCGAAACCAGGGTGGGAGACGGTAcaatggagggggggggaaagcaaag
gggaggggcaggctCTGTGGACCGGCGTCATGGGGCAAGCAGGCCTGGTC
CGCCTctctgagggaggggaggagggagggagggaaggagggtggacgGG
CGTGCAGGAGACGCTGCTTGCAGACGACGGCGGGGAACTGGTGCCCACAG
ACGACGCCGCGCGAGGGGGGTGGACGGGGGgcgcatccctcccttcctgc
ccttcccccgaGTCCTCAACCCCTCAGGACCGGAGGCCCCCGACGGCAAG
CGCCATGCCCCCACCGGCCACAGCCAAGGTGCCGATCGCTCGCCTCAGGC
TCCCTCCCGACTGGGCGGTGCTGACCGTCTCCCCCCTGAAAGCCCCGCCG
GGctcgcccttccccacctaccaccacctccacctcccccccccctcctc
ctcgtcctccgccgaTTCCTGCCCCACCAAGCGCGCCCCGCTCTGCGTGG
GTCTTGCTGCCCCGTCCTCTTACCTCccggacctcctccctttccttccc
accgccttcgTCTACAAAGGGGCAAGTCGACTCAGCGTGGGCCAGGACTA
CCTCCGGTCCTGCCTCGCCTCGGCCGCCCGCCACCCGACCCAATACCTGT
TCCGACCGATCCGTATGTACCCCATCCATGTAAatgaggatgggaaagaa
gggccTTGGCACGCCCTCTGCCGGAGCCTGGCccacaaggggggggagga
gaagatgggcCGCTTGACCgcctggagggggacgggcgggCAGGCGGGCA
GGCAGGACCGGTGGTTGGACGGTCGCCTCAAGTTCCACGTCCTGTTGAAC
TCGACCTTGCGAGATTTCTGGCGAGAGTTGGGCTtgacggggtgggggga
aggcggggagacgCAGGAAGGCCTGTCCGTGGTCGTCCActtcaagaagg
agaggggccggagggcgcggggagaggatgcgAAGACCCTGAGTGGGCCG
TCGAgcgcgaggggggaggcgacaaAGGGGCTCGGCATGACCTGGTCCTC
CAAGAGGAGGCCATTACCGCATTTCCCGGTGCGGGAGGGaccggcggagg
gcgggaaggagggcggaaaggaggtgctttggaaggaaggaggggtggag
agcGAGGCGCCGAGGCCCCAACCTGTGGACCCGCGGCGCGTCCATGCCAC
GTCACTCACCTCCTTAGATTCCATGACGTCCTCCCCTGccggaaaggggg
gggggagcccccgcaccctccctccccccgccctcgtggCGTCCCACCCC
AGGAGCTCTGCCTTTCACCGACCTGCTGCCCTCACCTGCAAGAGCCCAAG
GAATGACACCGGTGCGGCGTTTTCAGGGCAGGATGGGGAGCAACGGAAAG
ATCCTCCGTTTGTTCCCCTTGCTCCGCCACTTCCTGTCTCCCTTCCtact
tcccgccctccctcatcttcccggctgctttccccccaaggtcctcctcc
aacggcgtccctccctccgcccgccttTGTCTCGCCGGAGATCCTGGTCA
AGATCGACAAAACCATAGAATTCTTGGGCGGCTCCATGATCCCTCTGAAA
ACACTCCAGGAACTGACCGAACAGATCCTCGCGGACCCGGGCAGGCACCC
AGACATGCATTTTGTCTTGGACGGCCACATCGGCAACCCCTATTTCATGG
AACGACTCGAACGTCGTCTGGCGGAaacgcctcccctccctccctccctc
cctccctccctgagccCCGAGCACGAGAGTGGCCCCAGGCCCTCGCCGTT
atcgcccgcccccttgtCCCACCTAGCCCACGCCATCCCCTCGACGACCA
GGGATACACCCTGTTCCGttgccagccccccccccacccccacggTAGGC
AGAcgaagggcgggcagggaggaccaggcaggaagaggggaagcgcagtg
ggagcggggagagggaccggTGGGATTTAAAACGGCGTTCCCCCACCTTC
GGTAA

Synonyms

Publications