rna2789, rna2789 (mRNA) Nannochloropsis gaditana

Overview
Namerna2789
Unique Namerna2789
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length507
Alignment locationCM002459.1:1214069..1215033 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100197g1.5168.mrna
Orig protein idgnl|cribi|Naga_100197g1.5168
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1214069..1215033 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100197g1gene2669Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27892.1cds2781Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2789rna2789-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2789 ID=rna2789|Name=rna2789|organism=Nannochloropsis gaditana|type=mRNA|length=507bp
ATGGCTTTTATGATGTGTGGTTTGCATGTGATATGTGTCCTAATTGTGGG
GGCTTGCCTGAATATGGAGGGGGAGCGAGTGGAACGCGGAGCCACTTTCC
TCCGACCCCAAGAGCTAGCTGAAACACAATTATTGATGTATTTAGAGATT
TGTTGCGCGCATGACCCTCAGCCCAGCGGCCATTCGACGGAGATGCGGAG
GGCCATAGGACTGGAAAATGTCTGCCTCCTATTACTCGTGACGAATCGTA
GAGCGGTACAAGAAGCTTCCACGAGTTCGTACGGGGGCCTTTGGGACGGA
TGCCCCCCATGCAACTATTGTGACGACACGCCACGTGGCATGGGCGCGAT
GTTGAAGGAAAAGAAAAAAAGCCCCCGACGCTCACGCTCCGCTGTCTTCC
TCGAGGCCCGTGAGCCGACTTGTCTCTTTCCTTCTTCCCTCCCCTCCTTC
TTCCCGCCTCCCTTTCTCTCCCCTCCTTCCTGTTCGCCGTCTCCGTTCGA
GGGATGA
back to top

protein sequence of rna2789

>rna2789-protein ID=rna2789-protein|Name=rna2789|organism=Nannochloropsis gaditana|type=polypeptide|length=123bp
SSTAVVYEHLENLWVGVTEAALDRLMDEPSTPGTRKAVEILARTVCGTEP
GAHRTRLMRMEERLRPLLAGEGEGTEEERIGEGEDESEEEGGKVHRDEGR
RRGHKAGAGQEGWVGRAEGPEGG
back to top

mRNA from alignment at CM002459.1:1214069..1215033-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2789 ID=rna2789|Name=rna2789|organism=Nannochloropsis gaditana|type=mRNA|length=965bp|location=Sequence derived from alignment at CM002459.1:1214069..1215033- (Nannochloropsis gaditana)
TCTTCCACCGCCGTGGTGTACGAGCACCTGGAAAACCTCTGGGTGGGCGT
GACGGAGGCAGCCCTCGATCGTCTCATGGACGAGCCGTCGACGCCAGGGA
CGAGGAAGGCGGTGGAAATTTTGGCGCGAACCGTGTGTGGGACCGAGCCT
GGGGCCCACAGGACGCGGCTGATGAGGATGGAGGAGCGGTTGCGGCCGTT
GCTGGCGGGCGAAGGGGAGGGAACGGAGGAGGAGAGGATTGGAGAGGGGG
AGGACGAAAGCGAGGAGGAAGGTGGGAAGGTGCATAGGGACGAAGGGAGG
AGAAGAGGGCACAAGGCCGGGGCGGGGCAGGAGGGATGGGTGGGGAGGGC
GGAGGGACCCGAAGGGGGTTGACGGCGTGCGTGTGACGTTGGTGGTGGGG
GGGGGGGGGAGGGCGGACAAATTTGTGGGAAGCAATGAGATAGTTTGAAA
ACGTCCCAGGCGTTGGGAGCCCTCGTCGGGACGGCGCAGGAATGCACGCT
GGGGCAGGGGAGGAGGAAGGTCCGAGTGAAAAGTGTAAGAGGGGCCGAGG
TGACTCAGCGAAGCAAGAGAATGACAATGTATGGCACCGGGGAAGCGAGG
ACACATGCACTCCCCCAGAGAATGCGGAGTGAAGCCAAAGGACTGCGCGG
GGTGGGTGGAGAGCGCGAGAAGGCAAGCTGCCATAGCGGAAGACGGAGTC
GGAGCAGGCGACAGCCATGGCGGTGAAGAACGGCAGCAGCAACACAGAAA
AAAACAGTGACATTAAAGCTTTTAAATGAAATCATGTACGGTAGTGCCCC
GGGCAAGGTCTATCTACATCCTCCAATCGCCGTTGCTTTACGTCCGAGGC
TGGGAGGTGGGGGGGGGAGGGGGGGAAAGGCAACGAAGACGAAGAAAGCC
TACAACCTCATGGAGTGAGGTCGTATTCCCCATTTTCCTAGAGGACATAG
GATGACGCATTCATC
back to top

Coding sequence (CDS) from alignment at CM002459.1:1214069..1215033-

>rna2789 ID=rna2789|Name=rna2789|organism=Nannochloropsis gaditana|type=CDS|length=372bp|location=Sequence derived from alignment at CM002459.1:1214069..1215033- (Nannochloropsis gaditana)
TCTTCCACCGCCGTGGTGTACGAGCACCTGGAAAACCTCTGGGTGGGCGT
GACGGAGGCAGCCCTCGATCGTCTCATGGACGAGCCGTCGACGCCAGGGA
CGAGGAAGGCGGTGGAAATTTTGGCGCGAACCGTGTGTGGGACCGAGCCT
GGGGCCCACAGGACGCGGCTGATGAGGATGGAGGAGCGGTTGCGGCCGTT
GCTGGCGGGCGAAGGGGAGGGAACGGAGGAGGAGAGGATTGGAGAGGGGG
AGGACGAAAGCGAGGAGGAAGGTGGGAAGGTGCATAGGGACGAAGGGAGG
AGAAGAGGGCACAAGGCCGGGGCGGGGCAGGAGGGATGGGTGGGGAGGGC
GGAGGGACCCGAAGGGGGTTGA
back to top
Synonyms
Publications