rna278, rna278 (mRNA) Nannochloropsis gaditana

Overview
Namerna278
Unique Namerna278
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length471
Alignment locationCM002455.1:701096..702225 -

Link to JBrowse

Properties
Property NameValue
Productiron-sulfur cluster scaffold protein nfu-like protein
Orig transcript idgnl|cribi|Naga_100026g38.10630.mrna
Orig protein idgnl|cribi|Naga_100026g38.10630
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:701096..702225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100026g38gene267Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna278rna278-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30376.1cds278Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna278 ID=rna278|Name=rna278|organism=Nannochloropsis gaditana|type=mRNA|length=471bp
ATGACTCTTCTGGGCAGCGGGCCTTCTGAGGGCCTATGGATTGGCAGCTG
GAGGAGCACCGACGGGAAATGCTGCAGAAGTGAGGGTGGCATCATGGCGA
GAGAGAGCCCGGGGGGTGACGGAATGGGCTTGATTTTAGAGGGCGAATTA
AAGAGAGCGAGCGATAGGGAAGAAGAAATCGGCGGAGGAGTGCATTGCTC
CTGGAACGTGAGTGTTAGAGAGTACCTTCACAGCACCTATAAGCTCTGCC
CCCGGTCTTGGGGCATGGGACTGGCGGGACCACAGCAGATACGACCCAGC
GTCTTGCGTTATAGAATAATACAGGCTACCATTGAAGTCATTACCATGTC
CTGCCTTATTTTGAGACGGGTTGGGGGTAAGGCAAGGGTGAGGGATGCGG
ACGCTTCACGTCGTCGATGGCCTCATCCGTCGGCCTCCGGGAAGGAAAAA
AAAAAGAAGAAACAAAATTAA
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protein sequence of rna278

>rna278-protein ID=rna278-protein|Name=rna278|organism=Nannochloropsis gaditana|type=polypeptide|length=296bp
MRRIWPAFAKPLNAVTWESAAFACPRSLNSLRVLHRTTRRQASNLRKSSS
HLAANYMWPSSASRTSGLAVPGHIQWRSMFIQTESTPNPESLKYVPGELV
LDEKYGTGMYFRQGDMEVNRSPLAKKLLKIEGVMGVFLGRTFITITKSPG
IIWQNLNPEIFATVMDHYAEGGVIVSDHAIVSDTTILDTDDEVVAMVKEL
MESRIRPAVQEDGGDIFYEGFDPESGLVSVRLAGSCSGCPSSAVTLKNGV
ENMLMHYIPEVKGIRQVEDDELNAVNEREAQTLEERLAKAGIPSAE
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mRNA from alignment at CM002455.1:701096..702225-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna278 ID=rna278|Name=rna278|organism=Nannochloropsis gaditana|type=mRNA|length=1130bp|location=Sequence derived from alignment at CM002455.1:701096..702225- (Nannochloropsis gaditana)
ATGCGGCGCATTTGGCCTGCTTTTGCCAAACCGCTCAATGCGGTGACTTG
GGAGTCGGCTGCATTCGCATGCCCACGCTCTCTGAACTCGCTTAGAGTCC
TGCACCGGACTACACGGCGCCAGGCGTCAAATCTGCGGAAGTCCTCTAGC
CACTTGGCCGCAAATTATATGTGGCCATCTTCCGCGTCGCGCACTTCAGG
ATTAGCTGTCCCAGGGCACATTCAATGGCGGAGCATGTTCATCCAGACGG
AAAGCACGCCTAACCCCGAGTCCTTAAAATACGTACCGGGAGAGCTGGTG
TTGGACGAGAAGTACGGCACGGGTATGTATTTCCGACAAGGAGACATGGA
GGTGAACCGCTCTCCATTGGCCAAGAAACTCCTGAAGATCGAGGGTGTGA
TGGGAGTCTTCCTGGGACGGACTTTCATCACCATCACCAAGTCGCCTGGT
ATCATCTGGCAGGTTCGTAGACAAGCAATACGAATTCGTGCCCTTGAGAT
TTCGGGTACACAATTGCCAGAGTTCTGGAAGAAAGGCCGTTGATTCTTTT
TGGCTCTCACGTACATCCATTCCTGTTCCGGCTAGAATCTGAATCCTGAG
ATCTTCGCCACCGTGATGGACCACTACGCGGAGGGGGGGGTGATAGTCAG
CGACCACGCAATCGTGAGCGACACGACGATCCTGGACACAGACGACGAGG
TGGTGGCCATGGTCAAGGAGCTGATGGAGTCGCGCATCCGGCCCGCAGTG
CAGGAGGACGGCGGGGACATTTTTTACGAGGGATTCGACCCCGAGAGTGG
GCTTGTCAGTGTGCGCCTGGCAGGCTCGTGCTCGGGCTGCCCCTCGTCAG
CGGTAACGCTGAAGAATGGAGTGGAGAACATGTTGATGCATTACATTCCC
GAGGTGAGGGGGTAGGGAGCAGGAACGTAGACTCATCTCGCTGCCGTCTG
ATCTAGATCCTCGCTGGCATGCACGCGTTGGACTCATGCTCCTCTCTCAC
GTTGCGCATGGGTACACAGGTGAAGGGCATCAGGCAGGTGGAGGATGACG
AGCTCAATGCGGTAAACGAGAGGGAGGCGCAGACGCTGGAGGAACGACTG
GCCAAGGCCGGAATCCCGAGCGCGGAGTGA
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Coding sequence (CDS) from alignment at CM002455.1:701096..702225-

>rna278 ID=rna278|Name=rna278|organism=Nannochloropsis gaditana|type=CDS|length=2673bp|location=Sequence derived from alignment at CM002455.1:701096..702225- (Nannochloropsis gaditana)
GTGAAGGGCATCAGGCAGGTGGAGGATGACGAGCTCAATGCGGTAAACGA
GAGGGAGGCGCAGACGCTGGAGGAACGACTGGCCAAGGCCGGAATCCCGA
GCGCGGAGTGAAATCTGAATCCTGAGATCTTCGCCACCGTGATGGACCAC
TACGCGGAGGGGGGGGTGATAGTCAGCGACCACGCAATCGTGAGCGACAC
GACGATCCTGGACACAGACGACGAGGTGGTGGCCATGGTCAAGGAGCTGA
TGGAGTCGCGCATCCGGCCCGCAGTGCAGGAGGACGGCGGGGACATTTTT
TACGAGGGATTCGACCCCGAGAGTGGGCTTGTCAGTGTGCGCCTGGCAGG
CTCGTGCTCGGGCTGCCCCTCGTCAGCGGTAACGCTGAAGAATGGAGTGG
AGAACATGTTGATGCATTACATTCCCGAGATGCGGCGCATTTGGCCTGCT
TTTGCCAAACCGCTCAATGCGGTGACTTGGGAGTCGGCTGCATTCGCATG
CCCACGCTCTCTGAACTCGCTTAGAGTCCTGCACCGGACTACACGGCGCC
AGGCGTCAAATCTGCGGAAGTCCTCTAGCCACTTGGCCGCAAATTATATG
TGGCCATCTTCCGCGTCGCGCACTTCAGGATTAGCTGTCCCAGGGCACAT
TCAATGGCGGAGCATGTTCATCCAGACGGAAAGCACGCCTAACCCCGAGT
CCTTAAAATACGTACCGGGAGAGCTGGTGTTGGACGAGAAGTACGGCACG
GGTATGTATTTCCGACAAGGAGACATGGAGGTGAACCGCTCTCCATTGGC
CAAGAAACTCCTGAAGATCGAGGGTGTGATGGGAGTCTTCCTGGGACGGA
CTTTCATCACCATCACCAAGTCGCCTGGTATCATCTGGCAGGTGAAGGGC
ATCAGGCAGGTGGAGGATGACGAGCTCAATGCGGTAAACGAGAGGGAGGC
GCAGACGCTGGAGGAACGACTGGCCAAGGCCGGAATCCCGAGCGCGGAGT
GAAATCTGAATCCTGAGATCTTCGCCACCGTGATGGACCACTACGCGGAG
GGGGGGGTGATAGTCAGCGACCACGCAATCGTGAGCGACACGACGATCCT
GGACACAGACGACGAGGTGGTGGCCATGGTCAAGGAGCTGATGGAGTCGC
GCATCCGGCCCGCAGTGCAGGAGGACGGCGGGGACATTTTTTACGAGGGA
TTCGACCCCGAGAGTGGGCTTGTCAGTGTGCGCCTGGCAGGCTCGTGCTC
GGGCTGCCCCTCGTCAGCGGTAACGCTGAAGAATGGAGTGGAGAACATGT
TGATGCATTACATTCCCGAGATGCGGCGCATTTGGCCTGCTTTTGCCAAA
CCGCTCAATGCGGTGACTTGGGAGTCGGCTGCATTCGCATGCCCACGCTC
TCTGAACTCGCTTAGAGTCCTGCACCGGACTACACGGCGCCAGGCGTCAA
ATCTGCGGAAGTCCTCTAGCCACTTGGCCGCAAATTATATGTGGCCATCT
TCCGCGTCGCGCACTTCAGGATTAGCTGTCCCAGGGCACATTCAATGGCG
GAGCATGTTCATCCAGACGGAAAGCACGCCTAACCCCGAGTCCTTAAAAT
ACGTACCGGGAGAGCTGGTGTTGGACGAGAAGTACGGCACGGGTATGTAT
TTCCGACAAGGAGACATGGAGGTGAACCGCTCTCCATTGGCCAAGAAACT
CCTGAAGATCGAGGGTGTGATGGGAGTCTTCCTGGGACGGACTTTCATCA
CCATCACCAAGTCGCCTGGTATCATCTGGCAGGTGAAGGGCATCAGGCAG
GTGGAGGATGACGAGCTCAATGCGGTAAACGAGAGGGAGGCGCAGACGCT
GGAGGAACGACTGGCCAAGGCCGGAATCCCGAGCGCGGAGTGAAATCTGA
ATCCTGAGATCTTCGCCACCGTGATGGACCACTACGCGGAGGGGGGGGTG
ATAGTCAGCGACCACGCAATCGTGAGCGACACGACGATCCTGGACACAGA
CGACGAGGTGGTGGCCATGGTCAAGGAGCTGATGGAGTCGCGCATCCGGC
CCGCAGTGCAGGAGGACGGCGGGGACATTTTTTACGAGGGATTCGACCCC
GAGAGTGGGCTTGTCAGTGTGCGCCTGGCAGGCTCGTGCTCGGGCTGCCC
CTCGTCAGCGGTAACGCTGAAGAATGGAGTGGAGAACATGTTGATGCATT
ACATTCCCGAGATGCGGCGCATTTGGCCTGCTTTTGCCAAACCGCTCAAT
GCGGTGACTTGGGAGTCGGCTGCATTCGCATGCCCACGCTCTCTGAACTC
GCTTAGAGTCCTGCACCGGACTACACGGCGCCAGGCGTCAAATCTGCGGA
AGTCCTCTAGCCACTTGGCCGCAAATTATATGTGGCCATCTTCCGCGTCG
CGCACTTCAGGATTAGCTGTCCCAGGGCACATTCAATGGCGGAGCATGTT
CATCCAGACGGAAAGCACGCCTAACCCCGAGTCCTTAAAATACGTACCGG
GAGAGCTGGTGTTGGACGAGAAGTACGGCACGGGTATGTATTTCCGACAA
GGAGACATGGAGGTGAACCGCTCTCCATTGGCCAAGAAACTCCTGAAGAT
CGAGGGTGTGATGGGAGTCTTCCTGGGACGGACTTTCATCACCATCACCA
AGTCGCCTGGTATCATCTGGCAG
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Synonyms
Publications