rna2777, rna2777 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2777
Unique Name	rna2777
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2107
Alignment location	CM002459.1:1177984..1179145 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100338g4.10096.mrna
Orig protein id	gnl\|cribi\|Naga_100338g4.10096
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:1177984..1179145 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100338g4	gene2658	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2777	rna2777-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27901.1	cds2769	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:1177984..1179145-
coding sequence from alignment at CM002459.1:1177984..1179145-

mRNA sequence

>rna2777 ID=rna2777|Name=rna2777|organism=Nannochloropsis gaditana|type=mRNA|length=2107bp
CGCCTTAATACAGACTTTGTGCATGATCTTACCGATAATGCGTCCTCTAT
TGAACCGACTTCGCTTGCAAACGGGCCGAATCGCGCTCATGGCCATTCCC
GCGACTGCAGCCGCGCATTTTTCCTCCTCATCCAAGCTGGACGGCAAAGC
ATCATCGGAGCCGCAGCATTTTGACTATTTGGTGATTGGGGGGGGGAGCG
GCGGGGTGGCATCCGCCCGTCGTGCGGCCGCCTACGGTGCCAAAGTCGCC
TTGGTAGAGTACAAGGCGCTGGGAGGGACGTGTGTGAACGTGGGCTGTGT
GCCCAAGAAAGTCATGTTCAACACGGCAATTCTCGCGGAGCAGATGCAGG
AAGCTGGCCACTTTGGCTTCTACAGGCGGGGGCCTTTGACGGGGGCGGAG
ACAGGGAAGAAGGACGCAGTGACGGAGACGTTTGGATTCGACTGGAAGAC
GATCAAGGAGGCGCGGGATGCCTACGTGCGTCGCTTGAACGGGATATATG
CCACGTTGTTGCGGAACAGCACGGTGGAGGTGCTGGAGGGAGCCGCCCGT
TTCACGGGGCCCCGACGTGTGCAGGTTGGGGAGAAAGAGTATACAGCCGA
CCACATACTGATCGCCACGGGGGGAAAGCCGGTGATGCCTAAAATGCCGG
GGGTGGAGCACTGCATCCATTCGGACGGGTTCTTCGCGCTGGAGGAACTT
CCCAAACGGGTGGCCGTGGTGGGCGCAGGCTACATCGCCGTGGAGCTGGC
GGGGATTTTCAATTCCTTGGGGGCGGACACGAACTTGTTCGTCCGGTACG
ATGGTCCATTGAGGCCTTTCGACCAATTATTGCGCGAAACCCTCATGCAG
GAGATGGACCACGCAGGCTTGCACTTGCACAAGCACAGCACCCCGGCAGG
GGTCCAGAAGGACGAAAAAACGGGGAAACTATCCGTCACTCTCACGAACG
GGCAGGAGCACAAGGACTTCGACGTGGTCCTCCTGGCCATTGGCCGGAGC
CCCGAGACAGAGACCTTGGGGTTGGAGGCGGGGGGCATCGCGACCGTGGA
GAAGAAAGGCTATATCCAGGCAGACGCGCAACAGAATACGTCCATGCCCG
GGGTCTATGCCTTGGGAGACGTGTGCGGGAAAGTGGAGTTGACTCCCATG
GCCATCGCGGCGGGGCGACGTTTGGCAGATCGCCTCTTCGGTGGGCTGGA
TGGCGCGCAGGCAGATTATGCCAACGTGCCGACTGTCATTTTCTCGCATC
CCCCCATTGGCACGGTCGGACTCACGGAGGCCGAAGCCCGGGAGCAATAC
GATGCCAAGGATTTGAAAATCTACACCTCCCGCTTCGTCAATTTGTTTTA
TGGGCCCTGGCCTGTCCCGCCCGAGGCGAAGCCCAAGACGGCGATGAAGC
TCATCTGCGTCGGCCCCGAAGAGAGGGTGGTGGGGCTGCACGTGATTGGC
ATGGGTGCAGACGAGATGCTGCAAGGCTTCGCGGTGGCCTTGAAGAAAGG
GTGCACCAAGGCAGATTTCGATGCGGCCTTGGCGATCCACCCCACTGCGG
CGGAAGAATTCGTCACTTTAGCTCCGTGGGGTCTGAGCGGGAAGAAAGGG
GAAAAGGCGCGGGCCAAATTGTAAGGAGGTCCACCAAACAGTGCGAGCAT
TAGAAAATGGTGGAGAAACATTGGAATGGGAGGGCGAGGTCGATGAAGAA
AGAGAATCTTGGAGGAGAAATGAAGCACAGGTAATAGTGCGACAAGACCT
ACAGGCGTTCTCTGAAATTATCGACTCACTCGCAAACGGCACTGCTTCGA
CACGCATTTGGAGTAAGCAGGCCGTGCTGTGGGTTGGATGTTTTTGTAGT
TTTCTCCCGTCAGTGGAAGAATCTAAGATTCAGCAGGGGAAATTTGGGTG
GTTTTTGTGGGTGGACAAGGCTGCCAAGGGGGAAGGAAGGGCGGAAGAGC
TTTGCGAAAGTTTCAAACTTTTACCGTGACAAATGATTAAAGGCCATTTT
TTCCAAATTTAAACATGCTTTCATTGCTCATTTCTACGTCAAATCAGTCA
CTTCCGTCCCTCCCACCGTCACACGATTCAGAAACACCGGGAACCGCCCC
AAAAGAC

protein sequence of rna2777

>rna2777-protein ID=rna2777-protein|Name=rna2777|organism=Nannochloropsis gaditana|type=polypeptide|length=369bp
MWKATAWEDRCTRHRSSGGILEAGTPSFIQSLTCPTHSHRPGHGRITSGM
PRHRTLGLMTALVWAYESAFMLLPSRGFRVPFYNLPRPLSAHKSPLATGS
AGKNCGMHTILYARLRDRGDEEDEMESLLRALLRGDRGSMEDYEQRRRLE
AVRQEEASQGLWGKAKSIVRRVASKAPLLLIAPVVLWAGFQLSGVAVSLG
LTSALVFASFALPPMFALTFLMPLVVLMLVGTFVFPILPFAILGFLPGFV
LLPLVFLGGVFMLTQFAGSSRSSSSTWGLTGFDEESWPWGGKTFTWVTLD
ADEGMEGRRKDQSNRGRNDGIIDVTATEADDDEEDGAYAGVGEVACLLGR
FPVFLNRVTVGGTEVTDLT

mRNA from alignment at CM002459.1:1177984..1179145-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2777 ID=rna2777|Name=rna2777|organism=Nannochloropsis gaditana|type=mRNA|length=1162bp|location=Sequence derived from alignment at CM002459.1:1177984..1179145- (Nannochloropsis gaditana)
ATGTGGAAGGCAACAGCTTGGGAAGACCGCTGTACACGTCACCGTTCAAG
CGGGGGGATACTTGAAGCAGGAACACCGTCCTTTATCCAGAGTCTCACAT
GTCCAACCCATTCGCACCGCCCAGGACACGGACGAATCACATCCGGTATG
CCACGACATCGAACCTTGGGGTTGATGACAGCCCTTGTATGGGCGTACGA
GTCGGCGTTCATGCTGCTTCCCAGTCGAGGTTTCCGAGTCCCCTTTTATA
ACCTCCCCAGGCCGCTTTCAGCGCACAAGTCCCCACTTGCCACCGGGAGC
GCTGGTAAGAACTGTGGCATGCACACCATTCTATACGCTCGATTACGAGA
CAGAGGTGACGAAGAGGATGAAATGGAGAGTCTTTTGCGAGCCCTTCTGC
GCGGAGACCGTGGCAGCATGGAGGACTACGAACAACGACGGCGACTGGAA
GCGGTTCGACAAGAAGAAGCGTCGCAGGGCCTGTGGGGAAAAGCCAAAAG
CATTGTGCGCAGAGTGGCATCAAAAGCTCCCCTTTTGTTAATCGCACCCG
TTGTTTTATGGGCGGGGTTCCAATTGAGTGGGGTGGCCGTATCCCTTGGC
TTGACTTCTGCACTGGTTTTCGCCAGCTTTGCCCTCCCACCCATGTTTGC
ATTGACGTTCCTGATGCCGCTGGTTGTCCTCATGCTTGTTGGGACCTTTG
TCTTCCCAATCCTCCCTTTCGCAATCCTTGGCTTTTTGCCGGGTTTTGTT
TTGCTGCCCCTCGTCTTCTTGGGTGGTGTTTTTATGCTGACTCAATTCGC
CGGCAGCAGCAGAAGCAGCAGCAGTACGTGGGGTTTGACGGGCTTCGACG
AAGAGTCTTGGCCATGGGGTGGTAAAACGTTCACGTGGGTCACCCTCGAT
GCGGATGAGGGGATGGAGGGGAGGCGCAAGGACCAGTCCAACCGGGGGAG
GAACGATGGGATCATTGACGTGACTGCCACGGAGGCCGACGACGACGAGG
AGGACGGTGGGAAACGAGGGCTGGATGATTTTGACAGGCGCCTGCGAGAT
TGAAAAAGGAGCATATGCCGGAGTGGGCGAGGTTGCGTGTCTTTTGGGGC
GGTTCCCGGTGTTTCTGAATCGTGTGACGGTGGGAGGGACGGAAGTGACT
GATTTGACGTAG

Coding sequence (CDS) from alignment at CM002459.1:1177984..1179145-

>rna2777 ID=rna2777|Name=rna2777|organism=Nannochloropsis gaditana|type=CDS|length=2220bp|location=Sequence derived from alignment at CM002459.1:1177984..1179145- (Nannochloropsis gaditana)
GAGCATATGCCGGAGTGGGCGAGGTTGCGTGTCTTTTGGGGCGGTTCCCG
GTGTTTCTGAATCGTGTGACGGTGGGAGGGACGGAAGTGACTGATTTGAC
GTAGATGTGGAAGGCAACAGCTTGGGAAGACCGCTGTACACGTCACCGTT
CAAGCGGGGGGATACTTGAAGCAGGAACACCGTCCTTTATCCAGAGTCTC
ACATGTCCAACCCATTCGCACCGCCCAGGACACGGACGAATCACATCCGG
TATGCCACGACATCGAACCTTGGGGTTGATGACAGCCCTTGTATGGGCGT
ACGAGTCGGCGTTCATGCTGCTTCCCAGTCGAGGTTTCCGAGTCCCCTTT
TATAACCTCCCCAGGCCGCTTTCAGCGCACAAGTCCCCACTTGCCACCGG
GAGCGCTGGTAAGAACTGTGGCATGCACACCATTCTATACGCTCGATTAC
GAGACAGAGGTGACGAAGAGGATGAAATGGAGAGTCTTTTGCGAGCCCTT
CTGCGCGGAGACCGTGGCAGCATGGAGGACTACGAACAACGACGGCGACT
GGAAGCGGTTCGACAAGAAGAAGCGTCGCAGGGCCTGTGGGGAAAAGCCA
AAAGCATTGTGCGCAGAGTGGCATCAAAAGCTCCCCTTTTGTTAATCGCA
CCCGTTGTTTTATGGGCGGGGTTCCAATTGAGTGGGGTGGCCGTATCCCT
TGGCTTGACTTCTGCACTGGTTTTCGCCAGCTTTGCCCTCCCACCCATGT
TTGCATTGACGTTCCTGATGCCGCTGGTTGTCCTCATGCTTGTTGGGACC
TTTGTCTTCCCAATCCTCCCTTTCGCAATCCTTGGCTTTTTGCCGGGTTT
TGTTTTGCTGCCCCTCGTCTTCTTGGGTGGTGTTTTTATGCTGACTCAAT
TCGCCGGCAGCAGCAGAAGCAGCAGCAGTACGTGGGGTTTGACGGGCTTC
GACGAAGAGTCTTGGCCATGGGGTGGTAAAACGTTCACGTGGGTCACCCT
CGATGCGGATGAGGGGATGGAGGGGAGGCGCAAGGACCAGTCCAACCGGG
GGAGGAACGATGGGATCATTGACGTGACTGCCACGGAGGCCGACGACGAC
GAGGAGGACGGAGCATATGCCGGAGTGGGCGAGGTTGCGTGTCTTTTGGG
GCGGTTCCCGGTGTTTCTGAATCGTGTGACGGTGGGAGGGACGGAAGTGA
CTGATTTGACGTAGATGTGGAAGGCAACAGCTTGGGAAGACCGCTGTACA
CGTCACCGTTCAAGCGGGGGGATACTTGAAGCAGGAACACCGTCCTTTAT
CCAGAGTCTCACATGTCCAACCCATTCGCACCGCCCAGGACACGGACGAA
TCACATCCGGTATGCCACGACATCGAACCTTGGGGTTGATGACAGCCCTT
GTATGGGCGTACGAGTCGGCGTTCATGCTGCTTCCCAGTCGAGGTTTCCG
AGTCCCCTTTTATAACCTCCCCAGGCCGCTTTCAGCGCACAAGTCCCCAC
TTGCCACCGGGAGCGCTGGTAAGAACTGTGGCATGCACACCATTCTATAC
GCTCGATTACGAGACAGAGGTGACGAAGAGGATGAAATGGAGAGTCTTTT
GCGAGCCCTTCTGCGCGGAGACCGTGGCAGCATGGAGGACTACGAACAAC
GACGGCGACTGGAAGCGGTTCGACAAGAAGAAGCGTCGCAGGGCCTGTGG
GGAAAAGCCAAAAGCATTGTGCGCAGAGTGGCATCAAAAGCTCCCCTTTT
GTTAATCGCACCCGTTGTTTTATGGGCGGGGTTCCAATTGAGTGGGGTGG
CCGTATCCCTTGGCTTGACTTCTGCACTGGTTTTCGCCAGCTTTGCCCTC
CCACCCATGTTTGCATTGACGTTCCTGATGCCGCTGGTTGTCCTCATGCT
TGTTGGGACCTTTGTCTTCCCAATCCTCCCTTTCGCAATCCTTGGCTTTT
TGCCGGGTTTTGTTTTGCTGCCCCTCGTCTTCTTGGGTGGTGTTTTTATG
CTGACTCAATTCGCCGGCAGCAGCAGAAGCAGCAGCAGTACGTGGGGTTT
GACGGGCTTCGACGAAGAGTCTTGGCCATGGGGTGGTAAAACGTTCACGT
GGGTCACCCTCGATGCGGATGAGGGGATGGAGGGGAGGCGCAAGGACCAG
TCCAACCGGGGGAGGAACGATGGGATCATTGACGTGACTGCCACGGAGGC
CGACGACGACGAGGAGGACG

Synonyms

Publications