rna2776, rna2776 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2776
Unique Name	rna2776
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2096
Alignment location	CM002459.1:1175645..1178057 +

Link to JBrowse

Properties


Property Name	Value
Product	glutathione reductase
Orig transcript id	gnl\|cribi\|Naga_100338g3.10100.mrna
Orig protein id	gnl\|cribi\|Naga_100338g3.10100
Gene	GSR
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:1175645..1178057 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
GSR	gene2657	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2776	rna2776-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27905.1	cds2768	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:1175645..1178057+
coding sequence from alignment at CM002459.1:1175645..1178057+

mRNA sequence

>rna2776 ID=rna2776|Name=rna2776|organism=Nannochloropsis gaditana|type=mRNA|length=2096bp
CATCGTGAATAACACTCCTATCCCAAAAAATGTGCTACATGTTTTTCTGG
CATGAAACGCCGATACTTCCCTTCCTTCCAGAGCTGCTTCTACGTGATGC
CCCGCATGATACGTACGCAACATCCTCGCATCATATGAAAACTCATCAAG
ATTTAAATTATGCATTGTTATTAAGTGTCATTTCCATTACCTCGGAGATC
GCTGGCAGTCATGGCGGAGTTAGGAGACGAGGGCGAGTACAGCGAGGCGA
TTGTTAATGGATTCATTTTTGCATTTCTTTGTCTCTTGGCCGGCTGCTTA
ATCATGAACCACATGATAGGACACAAGTACCATCCCAAGTACATCTCAGA
GGCAGGGGCCGTCGTCGCCGTCGGACTTGTCATAAGTGGAATTGTCCGGC
TTGTCTTGCACAGAGAGGCGAAAGATTGGCTGAGGGGAATCAGCCCCACG
GTGTTTTTTATCGGCTTCTTGCCTCCCATTATTTTCAACAGCGGATACAC
CCTGCGCCGCAAGGTTTTCTTGTACTACTTCGTTCCCATCGTTTTCTACG
CTGTGATAGGCACTTTCCTCTCCTCCCTTTTTGTCGGCCTGTCCCTCTAC
GCACTCGCCCAAGCCCACCTCTCTTACTCCCTGTCCATGGCCGAATGCCT
CGCCTTCGGGGCGCTCATCTCCGCCACGGACCCGGTCTCTGTCCTGGCGG
TCTTCGAGCAGCTCAAGGTGGACCCTCTCATGTTTTACCTGGTGTTCGGG
GAGAGCGTCTTGAACGACGCGGTGGCTCTGGTGCTCTTCAACATCTTCTC
CAAGTTTGTGGGCACGGAGGCCTTCACCACTGCCAGCATGGGCTTCGCGA
TCGTGGATTTCCTCATCATCTTTTTCGGCTCCATGGCCGTGGGTTTCCTC
TTTGGCTGTCTGAGCGCCCTCCTTTTCAAGCACATCGACCTTCGGCACTC
CATCTACGAGATGGGTGTCTACCTCCTCCTGGCCTACATCCCAAGCCTGT
TTGGGACCGCCATCGAGCTCTCCGGTATTGTCTGCATCCTCTTCACAGGC
ATGTTCTCCCGGCATTACACGCACCGGAACCTGTCCGTGAAAGGCCAGGC
ACTGGCTTTCTTCATCTTTTCCCTCCTCGCCGTCCTGTCCGAGACTGCTG
TTTTTTTGGAGCTGGGTCTGAGCGTCTTCTCGGGCGAGAAGGAATACTTC
CATCCTCTCCTGATCATCTGGACGTTGCTCTTGATTCTTATCGGTCGAGC
CCTGAACATCTACCCCATCAGCTTCCTGGTGAACCGCTTCACCAGCGTCA
AGGTGGGCCGAAACGTCCAACACATGCTCTGGTTCGCGGGCCTCCGAGGC
GCCATGGCCTACGCCTGTTCCAAGCAATTTTCCAACGTCTTTGGCAATCA
ACCAATCATTGAGGCGACGACGATGGTCATCGTGCTCATCACGGTCTTCG
GTTTTGGCACCTTCACCATCACCATGCTCGAGAAAATGGAGATTCCCCTG
GGCGTGCCCGCCACGGACGCCGTGAACCTGTCGGAAAACCAAAGCCGGAT
TTTGGCCTTAGAGGAAAAATACTTGGTTCCTCTCTTGCAGCGGCCCCTCG
AATTTTCTTCGCAAGCCACGCCCTGGTCCCCCAATTACCGAGGGCGACAC
GGGCACGACCAGGAGGAGGGAGGGAAGGAGGGTGGGCCAGGCGACGCCGT
GCCCTCGGCTCCAGAGTTGTCGCCTGTCCCTTACCCAAGAAACCCTGGGG
AGCGACTCAGGCGTGAGTCGAGCGGGGAAGGATTCATGGCCAACGACCAT
ATCGATCGTCTCTTCGGGTACAATGCGCGTGGGTCGATTGAAATGAGCGC
GTCCGGGGCGGGTATAGCAGAAGGAGACGGGGATGACGGGCAGGAATCTC
AGCGGAATGTGATTTGATCGAAAGGATAAAATATCGTCCGATGCGAAAAG
CATCCTCAAATCCTTAAAAGAAGGACTGAAATGTATGAAACTCCAAAGAA
ATACAAGAAGATTGATTGAAAATTGATTCCATTTAGAATTCCTGTGGCAA
AGTCTTCGTGCCAAAACCGTGCCGCACACGACAAATAAGACAATCC

protein sequence of rna2776

>rna2776-protein ID=rna2776-protein|Name=rna2776|organism=Nannochloropsis gaditana|type=polypeptide|length=533bp
MILPIMRPLLNRLRLQTGRIALMAIPATAAAHFSSSSKLDGKASSEPQHF
DYLVIGGGSGGVASARRAAAYGAKVALVEYKALGGTCVNVGCVPKKVMFN
TAILAEQMQEAGHFGFYRRGPLTGAETGKKDAVTETFGFDWKTIKEARDA
YVRRLNGIYATLLRNSTVEVLEGAARFTGPRRVQVGEKEYTADHILIATG
GKPVMPKMPGVEHCIHSDGFFALEELPKRVAVVGAGYIAVELAGIFNSLG
ADTNLFVRYDGPLRPFDQLLRETLMQEMDHAGLHLHKHSTPAGVQKDEKT
GKLSVTLTNGQEHKDFDVVLLAIGRSPETETLGLEAGGIATVEKKGYIQA
DAQQNTSMPGVYALGDVCGKVELTPMAIAAGRRLADRLFGGLDGAQADYA
NVPTVIFSHPPIGTVGLTEAEAREQYDAKDLKIYTSRFVNLFYGPWPVPP
EAKPKTAMKLICVGPEERVVGLHVIGMGADEMLQGFAVALKKGCTKADFD
AALAIHPTAAEEFVTLAPWGLSGKKGEKARAKL

mRNA from alignment at CM002459.1:1175645..1178057+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2776 ID=rna2776|Name=rna2776|organism=Nannochloropsis gaditana|type=mRNA|length=2413bp|location=Sequence derived from alignment at CM002459.1:1175645..1178057+ (Nannochloropsis gaditana)
CGCCTTAATACAGACTTTGTGCATGATCTTACCGATAATGCGTCCTCTAT
TGAACCGACTTCGCTTGCAAACGGGCCGAATCGCGCTCATGGCCATTCCC
GCGACTGCAGCcgcgcatttttcctcctcatccaagCTGGACGGCAAAGC
ATCATCGGAGGTACGGGTGTATAGAAACAGTGGAAGAAGTCAAGCTGTCC
TATTAATTGTGGGCAGAATCTGCATCAGATATGTTTGCTATGGCAATTCT
GAGTATGCTGGGCTTGCGTTTGTGATAAAATTATGTCAGTCCCCCCTGCG
GACTATCGACGCTCAAAAAATATCCCACGCGAGTCCATTGTAAAGCTTGT
CGTTATTTACAGTCACGGAAGCGTCTCATACATACCcatccttcccatcc
tcattCCATTCTTCCTTTCGTTTGCCCTGCGGATATTGTCTCCGGCCTTC
ACCGTCGTCGTCTCAGCCGCAGCATTTTGACTATTTGGtgattggggggg
ggagcggcgggGTGGCATCCGCCCGTCGTGCGGCCGCCTACGGTGCCAAA
GTCGCCTTGGTAGAGTACAAGGCGCTGGGAGGGACGTGTGTGAACGTGGG
CTGTGTGCCCAAGAAAGTCATGTTCAACACGGCAATTCTCGCGGAGCAGA
TGCAGGAAGCTGGCCACTTTGGCTTCTACAGGCGGGGGCCTTtgacgggg
gcggagacagggaagaaggacgcaGTGACGGAGACGTTTGGATTCGACTG
GAAGACGATCAAGGAGGCGCGGGATGCCTACGTGCGTCGCTTGAACGGGA
TATATGCCACGTTGTTGCGGAACAGCacggtggaggtgctggagggagcC
GCCCGTTTCACGGGGCCCCGACGTGTGCAGGTTGGGGAGAAAGAGTATAC
AGCCGACCACATACTGATCGCCACGGGGGGAAAGCCGGTGATGCCTAAAA
TGCCGGGGGTGGAGCACTGCATCCATTCGGACGGGTTCTTCGCGCTGGAG
GAACTTCCCAAACGGGTGGCCGTGGTGGGCGCAGGCTACATCGCCGTGGA
GCTGGCGGGGATTTTCAATTCCTTGGGGGCGGACACGAACTTGTTCGTCC
GGTACGATGGTCCATTGAGGCCTTTCGACCAATTATTGCGCGAAACCCTC
ATGCAGGAGATGGACCACGCAGGCTTGCACTTGCACAAGCACAGCACCCC
GGCAGGGGTCCAGAAGGACGAAAAAACGGGGAAACTATCCGTCACTCTCA
CGAACGGGCAGGAGCACAAGGACTTCGACGTGGTCCTCCTGGCCATTGGC
CGGAGCCCCGAGACAGAGACCTTGGggttggaggcggggggcatcGCGAC
cgtggagaagaaaggctaTATCCAGGCAGACGCGCAACAGAATACGTCCA
TGCCCGGGGTCTATGCCTTGGGAGACGTGTGCGGGAAAGTGGAGTTGACT
CCCATGGCCATCGCGGCGGGGCGACGTTTGGCAGATCGCCTCTTCGGTGG
GCTGGATGGCGCGCAGGCAGATTATGCCAACGTGCCGACTGTCATTTTCT
CGCATCCCCCCATTGGCACGGTCGGACTCACGGAGGCCGAAGCCCGGGAG
CAATACGATGCCAAGGATTTGAAAATCTACACCTCCCGCTTCGTCAATTT
GTTTTATGGGCCCTGGCCTGTCCCGCCCGAGGCGAAGCCCAAGACGGCGA
TGAAGCTCATCTGCGTCGGCCCCgaagagagggtggtggggctGCACGTG
ATTGGCATGGGTGCAGACGAGATGCTGCAAGGCTTCGCGGTGGCCTTGAA
GAAAGGGTGCACCAAGGCAGATTTCGATGCGGCCTTGGCGATCCACCCCA
CTGCGGCGGAAGAATTCGTCACTTTAGCTCCGTGGGGTCTgagcgggaag
aaaggggaaaaggcgcgGGCCAAATTGTAAGGAGGTCCACCAAACAGTGC
GAGCATTAGAAAATGGTGGAGAAACATTGGAatgggagggcgaggtcgat
gaagaaagagaatcttggaggagaaatgaaGCACAGGTAATAGTGCGACA
AGACCTACAGGCGTTCTCTGAAATTATCGACTCACTCGCAAACGGCACTG
CTTCGACACGCATTTGGAGTAAGCAGGCCGTGCTGTGGGTTGGATGTTTT
TGTAGTTTTCTCCCGTCAGTGGAAGAATCTAAGATTCAGCAGGGGAAATT
TGGGTGGTTTTTGTGGGTGGACAAGGCTgccaagggggaaggaagggcgg
aagagCTTTGCGAAAGTTTCAAACTTTTACCGTGACAAATGATTAAAGGC
CATTTTTTCCAAATTTAAACATGCTTTCATTGCTCATTTCTACGTCAAAT
CAGTcacttccgtccctcccaccgtcACACGATTCAGAAACACCGGGAAC
CGCCCCAAAAGAC

Coding sequence (CDS) from alignment at CM002459.1:1175645..1178057+

>rna2776 ID=rna2776|Name=rna2776|organism=Nannochloropsis gaditana|type=CDS|length=3204bp|location=Sequence derived from alignment at CM002459.1:1175645..1178057+ (Nannochloropsis gaditana)
ATGATCTTACCGATAATGCGTCCTCTATTGAACCGACTTCGCTTGCAAAC
GGGCCGAATCGCGCTCATGGCCATTCCCGCGACTGCAGCcgcgcattttt
cctcctcatccaagCTGGACGGCAAAGCATCATCGGAGCCGCAGCATTTT
GACTATTTGGtgattgggggggggagcggcgggGTGGCATCCGCCCGTCG
TGCGGCCGCCTACGGTGCCAAAGTCGCCTTGGTAGAGTACAAGGCGCTGG
GAGGGACGTGTGTGAACGTGGGCTGTGTGCCCAAGAAAGTCATGTTCAAC
ACGGCAATTCTCGCGGAGCAGATGCAGGAAGCTGGCCACTTTGGCTTCTA
CAGGCGGGGGCCTTtgacgggggcggagacagggaagaaggacgcaGTGA
CGGAGACGTTTGGATTCGACTGGAAGACGATCAAGGAGGCGCGGGATGCC
TACGTGCGTCGCTTGAACGGGATATATGCCACGTTGTTGCGGAACAGCac
ggtggaggtgctggagggagcCGCCCGTTTCACGGGGCCCCGACGTGTGC
AGGTTGGGGAGAAAGAGTATACAGCCGACCACATACTGATCGCCACGGGG
GGAAAGCCGGTGATGCCTAAAATGCCGGGGGTGGAGCACTGCATCCATTC
GGACGGGTTCTTCGCGCTGGAGGAACTTCCCAAACGGGTGGCCGTGGTGG
GCGCAGGCTACATCGCCGTGGAGCTGGCGGGGATTTTCAATTCCTTGGGG
GCGGACACGAACTTGTTCGTCCGGTACGATGGTCCATTGAGGCCTTTCGA
CCAATTATTGCGCGAAACCCTCATGCAGGAGATGGACCACGCAGGCTTGC
ACTTGCACAAGCACAGCACCCCGGCAGGGGTCCAGAAGGACGAAAAAACG
GGGAAACTATCCGTCACTCTCACGAACGGGCAGGAGCACAAGGACTTCGA
CGTGGTCCTCCTGGCCATTGGCCGGAGCCCCGAGACAGAGACCTTGGggt
tggaggcggggggcatcGCGACcgtggagaagaaaggctaTATCCAGGCA
GACGCGCAACAGAATACGTCCATGCCCGGGGTCTATGCCTTGGGAGACGT
GTGCGGGAAAGTGGAGTTGACTCCCATGGCCATCGCGGCGGGGCGACGTT
TGGCAGATCGCCTCTTCGGTGGGCTGGATGGCGCGCAGGCAGATTATGCC
AACGTGCCGACTGTCATTTTCTCGCATCCCCCCATTGGCACGGTCGGACT
CACGGAGGCCGAAGCCCGGGAGCAATACGATGCCAAGGATTTGAAAATCT
ACACCTCCCGCTTCGTCAATTTGTTTTATGGGCCCTGGCCTGTCCCGCCC
GAGGCGAAGCCCAAGACGGCGATGAAGCTCATCTGCGTCGGCCCCgaaga
gagggtggtggggctGCACGTGATTGGCATGGGTGCAGACGAGATGCTGC
AAGGCTTCGCGGTGGCCTTGAAGAAAGGGTGCACCAAGGCAGATTTCGAT
GCGGCCTTGGCGATCCACCCCACTGCGGCGGAAGAATTCGTCACTTTAGC
TCCGTGGGGTCTgagcgggaagaaaggggaaaaggcgcgGGCCAAATTGT
AAATGATCTTACCGATAATGCGTCCTCTATTGAACCGACTTCGCTTGCAA
ACGGGCCGAATCGCGCTCATGGCCATTCCCGCGACTGCAGCcgcgcattt
ttcctcctcatccaagCTGGACGGCAAAGCATCATCGGAGCCGCAGCATT
TTGACTATTTGGtgattgggggggggagcggcgggGTGGCATCCGCCCGT
CGTGCGGCCGCCTACGGTGCCAAAGTCGCCTTGGTAGAGTACAAGGCGCT
GGGAGGGACGTGTGTGAACGTGGGCTGTGTGCCCAAGAAAGTCATGTTCA
ACACGGCAATTCTCGCGGAGCAGATGCAGGAAGCTGGCCACTTTGGCTTC
TACAGGCGGGGGCCTTtgacgggggcggagacagggaagaaggacgcaGT
GACGGAGACGTTTGGATTCGACTGGAAGACGATCAAGGAGGCGCGGGATG
CCTACGTGCGTCGCTTGAACGGGATATATGCCACGTTGTTGCGGAACAGC
acggtggaggtgctggagggagcCGCCCGTTTCACGGGGCCCCGACGTGT
GCAGGTTGGGGAGAAAGAGTATACAGCCGACCACATACTGATCGCCACGG
GGGGAAAGCCGGTGATGCCTAAAATGCCGGGGGTGGAGCACTGCATCCAT
TCGGACGGGTTCTTCGCGCTGGAGGAACTTCCCAAACGGGTGGCCGTGGT
GGGCGCAGGCTACATCGCCGTGGAGCTGGCGGGGATTTTCAATTCCTTGG
GGGCGGACACGAACTTGTTCGTCCGGTACGATGGTCCATTGAGGCCTTTC
GACCAATTATTGCGCGAAACCCTCATGCAGGAGATGGACCACGCAGGCTT
GCACTTGCACAAGCACAGCACCCCGGCAGGGGTCCAGAAGGACGAAAAAA
CGGGGAAACTATCCGTCACTCTCACGAACGGGCAGGAGCACAAGGACTTC
GACGTGGTCCTCCTGGCCATTGGCCGGAGCCCCGAGACAGAGACCTTGGg
gttggaggcggggggcatcGCGACcgtggagaagaaaggctaTATCCAGG
CAGACGCGCAACAGAATACGTCCATGCCCGGGGTCTATGCCTTGGGAGAC
GTGTGCGGGAAAGTGGAGTTGACTCCCATGGCCATCGCGGCGGGGCGACG
TTTGGCAGATCGCCTCTTCGGTGGGCTGGATGGCGCGCAGGCAGATTATG
CCAACGTGCCGACTGTCATTTTCTCGCATCCCCCCATTGGCACGGTCGGA
CTCACGGAGGCCGAAGCCCGGGAGCAATACGATGCCAAGGATTTGAAAAT
CTACACCTCCCGCTTCGTCAATTTGTTTTATGGGCCCTGGCCTGTCCCGC
CCGAGGCGAAGCCCAAGACGGCGATGAAGCTCATCTGCGTCGGCCCCgaa
gagagggtggtggggctGCACGTGATTGGCATGGGTGCAGACGAGATGCT
GCAAGGCTTCGCGGTGGCCTTGAAGAAAGGGTGCACCAAGGCAGATTTCG
ATGCGGCCTTGGCGATCCACCCCACTGCGGCGGAAGAATTCGTCACTTTA
GCTCCGTGGGGTCTgagcgggaagaaaggggaaaaggcgcgGGCCAAATT
GTAA

Synonyms

Publications