rna2771, rna2771 (mRNA) Nannochloropsis gaditana

Overview
Namerna2771
Unique Namerna2771
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1477
Alignment locationCM002459.1:1161108..1162285 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100267g3.4726.mrna
Orig protein idgnl|cribi|Naga_100267g3.4726
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1161108..1162285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100267g3gene2652Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2771rna2771-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27913.1cds2763Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2771 ID=rna2771|Name=rna2771|organism=Nannochloropsis gaditana|type=mRNA|length=1477bp
CTTGTTCTTCCTTTAACACCTACCTTACAGTTTTTGTGGTGGTTTTCTCC
GTGACTGCTGGCTGGGTGATCATGGCTGCCCGTGCCCCTTGCGGCTTTCT
TTCACGAATTGTAGCATTTCACAAGACCTGGCTTTCTATACTGGTTTTAT
TTTTGCTATATAGCACTAGTACCAACGCGTTCTATGGTCTTTCTGGACCC
CGACGATCCCAATTTGTCTCTGTTTTGTATGCCTCCACGCCAAGCAAACT
CCCTGTCGTGGGATCCTCGTTTTACGCTGAGGTCCGGAAACAAGCCACCG
AGGCCGTGCAAGCTGGATTGAAAGCTGGATTTGAGCAGATGGAAATTGAG
TTTCCTATCAGTCCAGGACGAATAGATGTCTCATTAGGAGAGTTCTTGGA
CGACTCCCGGGAATGGACCCGCGAATTTGTCCGACCATTTACGCCAAAGG
GGGCCAAACTTTGGGTTATATTTCCAGACGGGAAGGAGGCGACCTTGGCA
GGGAAAAGATGGGGGGGGGTGAATTTTCGCATCATGGGGATCGATACCGC
GATGAAAGCGTCCAAGGATGAGCCCTGTGAATTGCAGATCGCTGTCACGC
CAGGATTTAATGTCCAAGAATACATTAACTTGGAAAAAGTTCGACGGCCC
GGAGTACCCATGATAGTTGTCAATGGAAATTTGGACCGCATTCGTGGAGG
CTACTACCCTCGCATTTTTTACCCCGGTCTCTACAACGTCAAGGAGCGGA
TGCTGCAATATTTCGAGCCCGTGTACTATCTGAAGCCCGCTCAAGGTGGA
TTTATTTTCAGGAAATTTCCTGAAGAATGGCAGCAGGTCCTGGCCTACTA
CGACCTTCAGCCGGGGACGGGGCGAGGAAGGGGGGACAAAGGGCGGAAGG
AGGTGTTGACTAAGGTGGTGGCAACTTCCGAGGAACGACCAGCATATAAC
GACGTGGTGAATGCTCTTAAAAAAGAGAGCTTGAGCATGGCCAGGGCCGC
GCAGGAGGCCCAGGAGGCGGCGGAGAGGGAAGCAGGGTAGGACTCGGGCT
TGTAGATGTGAGAAGGAGGGCAAGAGAGGAGGAAATGAGAGTGGCCAGCC
ATGGGCTGGGAAAAAGGAGGGCTATGCAAATAAAGTAATCTTTGGGAAAG
AAAGAGTGCCATACGGGTAAGTTGAGAAGGTCTTATTTCTTATTTATTAC
ACGCGGAATAAGGGGCGGTCGTCGGAAGGAAAGAAAAAGAAGCAGTCGTG
TACTCGACATGTCAAAGGGCGACCCACAAGAAATGAAGCTCTTTTCAGCA
ATCAGAAAAATGGAAGAGAAAGAACGATGGTGTATTTGAATGTAATGGTA
TTGTGAAGTACGATGAGCAGACAGTGAATTCTGTGTGCAATAGTCCTTCT
TAAACACTTCTCATGGCATGCCCAAAGCCCCTCGCCCTCGCTTTCTCCGC
CTCTCCACCTCCCATCTCACTCTCTTC
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protein sequence of rna2771

>rna2771-protein ID=rna2771-protein|Name=rna2771|organism=Nannochloropsis gaditana|type=polypeptide|length=136bp
MFKQLFFAAAFLALLAQAFVPKASLPRNQLPLSTSAGAAMSRRTQLPLIN
LPSLALLDKMTAEEEEEARQLTFQNNLRSRKGRTTDEDGKSNIWAYERKE
EVEVAKGNGIVVVGLMIAIFLGALVFLPQIEFPNYD
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mRNA from alignment at CM002459.1:1161108..1162285+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2771 ID=rna2771|Name=rna2771|organism=Nannochloropsis gaditana|type=mRNA|length=1178bp|location=Sequence derived from alignment at CM002459.1:1161108..1162285+ (Nannochloropsis gaditana)
CTCTGGTGACGGCAATGGCGTGTGTAATGACAGAAGGAGTGTACAAACAT
GGAGAGGATTTCTTCAGTCGGTAGTCTGTCGTGAGGCGAGGTCAGATCTC
ACAACGTGGTGTTCTTCTCTCCTCACGGGGTAGGACCACGTCCTTGGAAA
GGCCCGCCGAGACGCGTGTAGTGGAAGCTTTGTGGCTTTCCTATGCACGT
AACCATCTCTTAAAGTCGACTGACCAACCTTATGCCGAGTTTCCATCTTG
GGAAGCCAAAATAGCGCAGCACTTGTAGTTGTTGTCTTGCTGACTGTCGT
ATAGAACGCTATGATAACGTGACTCTACATATGCCACTCATGGTCACAca
tcatccctccccgccacctcaCGATTACAGAGTGACCATATCTAATGTTC
AAGCAACTTTTCTTCGCGGCCGCGTTCTTGGCCCTGCTCGCCCAGGCCTT
CGTGCCCAAAGCCTCCCTTCCTAGGAACCAGCTCCCCTTATCTACAAGCG
CTGGCGCTGCGATGAGCCGTCGCACGCAGCTACCATTAATTAacctgccc
tccttggcacTGTTGGATAAAATGacagcggaagaagaagaagaagcgcg
ACAGCTTACTTTCCAGAACAACTTGCGGTCACGCAAGGGCCGCACGACGG
ACGAGGATGGCAAGTCAAATATATGGGCATATGAGCGTaaggaagaggtc
gaggtGGCAAAAGGAAACGGTATCGTGGTCGTGGGTTTGATGATTGCTAT
TTTCCTGGGTGCGCTGGTCTTCTTGCCCCAGATCGAGTTCCCCAATTACG
ACTAAGCACTGAAAATGGAGAGCTTGCGCCCGGTGCTCCCCGTGCGGAGA
ATGACCCTGACCTTCCTTTTttcgtccttccctcgtTCCTTGGAGATTCC
TGCTTGAATGCCTATGTACAAGCCTCTCCTATTCCTGACTGCACATCCTC
GCAATTAAAGGACGAAATGGACGGGGGAGGTAATAGTTGAAATTGCATGA
GCTCACACGCATAGTAACAGGAATCGGGTGTGGGTGGGATGAACGTTCGA
GTTTCGGATTTTTCGTGTTTTAGTAATAAGTGAGCGGAcgtgagagggaa
aatgaTAGAACCAACCCCAGCGACGAGGACAAAAAGGTTGTGTGTAATGA
TCTTGTTTGGATTATCTTCAAACCCCTG
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Coding sequence (CDS) from alignment at CM002459.1:1161108..1162285+

>rna2771 ID=rna2771|Name=rna2771|organism=Nannochloropsis gaditana|type=CDS|length=411bp|location=Sequence derived from alignment at CM002459.1:1161108..1162285+ (Nannochloropsis gaditana)
ATGTTCAAGCAACTTTTCTTCGCGGCCGCGTTCTTGGCCCTGCTCGCCCA
GGCCTTCGTGCCCAAAGCCTCCCTTCCTAGGAACCAGCTCCCCTTATCTA
CAAGCGCTGGCGCTGCGATGAGCCGTCGCACGCAGCTACCATTAATTAac
ctgccctccttggcacTGTTGGATAAAATGacagcggaagaagaagaaga
agcgcgACAGCTTACTTTCCAGAACAACTTGCGGTCACGCAAGGGCCGCA
CGACGGACGAGGATGGCAAGTCAAATATATGGGCATATGAGCGTaaggaa
gaggtcgaggtGGCAAAAGGAAACGGTATCGTGGTCGTGGGTTTGATGAT
TGCTATTTTCCTGGGTGCGCTGGTCTTCTTGCCCCAGATCGAGTTCCCCA
ATTACGACTAA
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Synonyms
Publications