rna2767, rna2767 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2767
Unique Name	rna2767
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	942
Alignment location	CM002459.1:1152734..1155293 +

Link to JBrowse

Properties


Property Name	Value
Product	protein kinase 6
Orig transcript id	gnl\|cribi\|Naga_100267g7.4722.mrna
Orig protein id	gnl\|cribi\|Naga_100267g7.4722
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:1152734..1155293 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100267g7	gene2648	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2767	rna2767-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27909.1	cds2759	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:1152734..1155293+
coding sequence from alignment at CM002459.1:1152734..1155293+

mRNA sequence

>rna2767 ID=rna2767|Name=rna2767|organism=Nannochloropsis gaditana|type=mRNA|length=942bp
AAAGATATCTACATTCAACTCTCTACTACTATGTCATTGCGGGTGCGGCA
AGTACGTCCGTCCCTGCTGCCTGCGCGACGCTTCATGTGCTCTTCGACCT
CCGCGCATCCCCAACCCCCTCCACTACTGATAACACGCCATGATCTGGGA
GGCAAACTAGTCGCGGAGTCAAGTAATACGGGGGTGATAGTTACACTTGC
CCTAAACCGGCCTGAAGCCCGGAACGCCTTGAACAAAGCATTGGTTACTG
CGTTGAACGATGCCCTTTCCTCCCTCGCCCAGGATCAGATTGCCCGTGTC
CTTCTTCTCACCAGCTCCGCGCCTACGAAGGCCTTCTGCGCCGGCGCCGA
CTTGAAAGAACGTGCTAATATGTCTCCCTCGGAAGTTTCCTCCTTCGTCT
CCAGCCTTCGGGCCCTGATGGACGGCGTGGAGAATTTACCAATGCCTGCC
CTCGCTGTCCTGGAGGGCGGTGCCTATGGTGGCGGCCTGGAATTGGCGTT
AGCGTGCGATATGAGGGTGGCAGGACCCAAGGCCGAAATGGGCCTGACGG
AGACAAGCCTGGCAATCATCCCGGGGGCGGGAGGCACGCAGCGTTTGCCG
CGTCTGATAGGCGCGGCCAGGGCCAAGGAGATGATGTTTCGGGCCACGCG
TATCGGCACTTCGGAGGCGCATCGGCTGGGTTTGGTGAATGCGGTGGCGA
CGGAGGAGGAGGAGGGAGGAGTGAGGGGATTGGCAGCCCGGTGGTGCCGG
GAGATCGCCTCGAACGGGCCGGTGGCAGTGCGCGCGGCGAAGCAGGCAGT
GCGGGAAGGGATGGAGGTGCCCCTGGCCCCGGGCCTGGAGATTGAGAGGG
CGTGCTACGCCAAGGTCATCCCCACCGAGGACAGGCTGGAGGGCCTGAGG
GCGTTCAGGGAGAAGCGGAAGCCGGTGTATGCGGGAAAGTAG

protein sequence of rna2767

>rna2767-protein ID=rna2767-protein|Name=rna2767|organism=Nannochloropsis gaditana|type=polypeptide|length=648bp
MDQYEVTKLISKSSSSLVYLGRKECDGTPVAIKKTSLAGRDARAQEKCLR
EARLITSLSSTHPNLLSCLDAFLVVEKGAQSYLIVVTEWAEAGDLARVIR
KARKEERRIHGGLCEARVWGCLEQLCAGIEHLHKARIVHGDLTPSHVLFD
GQGTLKVGGVSISQSRVRPPTLHGHPPEAAPASQAMGAGGKKRRKPVPVY
APPEILRGDGPGWKSDTWSLGCLAFEMGAGRPPYQLGEGGVEGLLAAMGS
GGEELAWPEGFSKELRDLVKSTLSVDPAQRPDVERVRETARRIGITRGEG
PRWEQRRGNGGGEGLRWVGAMETGENVEAGSEKGWSAWPTCSPARGGRGK
LLEGRWTKQAGKKKGGKREEANTDQGPETALPASESRATGGSLPGQGALT
SALDGAGSGGQGEGSMAAWSSEDDTGPQGRRQEDPLEAVVARLSLQPRSR
AVGTEMGWQGPGNIPQSPSRGLGPTGLEARGGSPEPLGRPIGATGREERP
CTVESMQAGIRCLQGQLQSLQSKVAEKHRRIRDLDAALLRVEWALADRRE
GKGLGRSEVSEKKGIVYGKSGLGLMEVRETVKQLQEENREMRLRTGFLLQ
MLGELRARKAEDARRKRQRLRRGQQFQRRRVWGDGKSAEKSGWEADGL

mRNA from alignment at CM002459.1:1152734..1155293+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2767 ID=rna2767|Name=rna2767|organism=Nannochloropsis gaditana|type=mRNA|length=2560bp|location=Sequence derived from alignment at CM002459.1:1152734..1155293+ (Nannochloropsis gaditana)
GGGATACTGCCCGGGCCAGTACAGGAGCGTAAATGCGGTGACGATACAAG
ATAACGTGCTGTCGTGAAGCCTTCGACTTTTCATCAGGGCGGTGAGGGTC
GAAGACGGCTTGGACAGTGATACTGAAAGAAAAGTGCGACTCGAGCCCCA
ACGTCCGGGTGCATGGATCAATACGAGGTAACGAAGCTCATCTCCAAAAG
CAGCTCGAGCCTTGTGTATCTTGGTCGGAAGGAATGTGACGGTACACCCG
GTACGTGCATTATGAAAGGAGATGAAAGGTCGAACGAACGAGATGACGGA
TCTGGCTAATCAGTACTTTCCCGCCCGCGTCAGGATTGAATCATACCTTA
CATGTGCATGTGTCCTTGAACAAAATTTCATCTCATTTCTACATTATTCC
AAACGCGACAGTGGCGATTAAAAAAACGAGTCTTGCCGGTCGCGACGCCA
GAGCTCAGGAGAAATGTTTGCGGGAGGCTCGCCTCATcacgtccctctcc
tccacccaccccAACCTTCTCTCTTGCCTGGACGCCTTCCTGGTCGTCGA
AAAGGGAGCACAGTCCTATTTGATCGTAGTGACGGAATgggccgaggcgg
gggaccTCGCCCGCGTGATCCGCAAggcgcgaaaggaggagaggaggata
caTGGAGGGTTATGTGAGGCGCGGGTCTGGGGATGCCTGGAGCAGCTTTG
TGCAGGGATCGAGCATTTGCACAAAGCCAGGATCGTTCACGGGGACTTGA
CACCCTCACACGTGCTTTTTGATGGGCAAGGGACGTTAAAGGTAGGCGGA
GTCAGCATCTCGCAGTCGCGGGTCAGACCACCCACCCTCCACGGCCATCC
CCCTGAAgctgcccccgcctcccaggcaatgggggcggggggaaagaagc
gaaGGAAGCCAGTGCCGGTATACGCGCCCCCAGAGATCCTCCGGGGGGAC
GGGCCCGGGTGGAAGAGCGATACGTGGAGCCTGGGATGCCTGGCGTTTGA
GATGGGCGCAGGGCGGCCCCCCTACCAGctcggcgagggcggggtggagg
gccttCTTGCAGCGATGGGTTCCGGAGGAGAGGAACTGGCGTGGCCTGAA
GGGTTCTCGAAGGAGCTTCGAGATTTGGTAAAATCCACGCTGTCGGTGGA
CCCGGCCCAACGCCCGGACGTGGAGCGCGTCCGAGAAACGGCTCGGAGAA
TCGGAATTACACGGGGGGAAGGTCCCCGGTGGGAacaaaggagaggaaac
ggggggggcgaaggccTTAGATGGGTGGGAGCTATGGAAACGGGCGAGAA
TGTGGAGGCAGGGTcggagaagggatggagcGCATGGCCGACCTGCTCGC
CCgcccgaggggggaggggaaagctaTTGGAAGGCCGGTGGACGAAGCAg
gcaggaaagaagaagggcgggaagagggaagaggcaaatACTGACCAAGG
GCCAGAGACGGCCCTCCCCGCGAGCGAGTCGCGAGCCACTGGGGGATCGC
TTCCGGGACAGGGGGCCTTGACTAGCGCCCTGGATGGAGCAGGCTCGGGG
GgtcaaggagagggcagcaTGGCGGCTTGGTCGAGCGAGGACGATACAGG
GCCGCAGGGCCGTCGGCAGGAGGACCCTCTGGAGGCAGTCGTGGCCAGAT
TGTCCCTCCAGCCCCGTTCGAGAGCAGTGGGCACCGAAATGGGCTGGCAG
GGCCCCGGAAACATCCCACAGTCTCCATCGAGGGGCTTGGGGCCCACAGG
GCTGGAGGCCAGGGGCGGGAGTCCGGAGCCTTTGGGTCGACCTATAGGAG
CAACAGGTCGTGAGGAGCGGCCGTGCACGGTCGAAAGCATGCAGGCGGGC
ATTCGCTGCCTCCAGGGTCAGCTTCAGTCGCTCCAGTCcaaggtggcgga
gaaacatCGTCGGATCCGCGATCTTGACGCGGCCCTTCTCCGAGTGGAGT
GGGCACTTGctgacaggagggagggaaagggattGGGACGCTCCGAGGTT
agtgaaaagaaagggattGTGTATGGAAAGAGCGGCCTGGGGTTGATGGA
GGTGCGAGAGACTGTGAAGCAGttgcaggaggaaaatcgGGAGATGCGCC
TGAGGACAGGGTTTCTTTTGCAAATGCTTGGAGAGCTACGGGCAAGAAAG
GCGGAAGATGCCCGGAGGAAGCGCCAGAGGCTGAGACGGGGGCAGCAGTT
CCAACGAAGGAGGGTGTGGGGAGATGGAAAGAGCGCGGAGAAGTCAGGGT
GGGAGGCTGACGGGCTGTGAGGGGATGGGGGTCCCCAGGGCGTCTGGGTG
AtccttcgcttcccttgCAAGCATACGCGTGGCGTGTTCTCGCTAGCACC
TGAGGGGATGAAAATGAAGGCGGGGAATGACACGGGCAGCTTCTGGTGCA
CAGGGGCGGTAAAGGATACATATGACAGACAATTGTTTGGAACCTGCCTG
ATCGTGTCTGCGCAAATTACTACCGGGTCAGCCGAATAAATATGCTTTAT
GGGGGGATTCGCACCATCCATCCGGAACACTAAAGTACATTACTCAGATT
TAAAACCCAG

Coding sequence (CDS) from alignment at CM002459.1:1152734..1155293+

>rna2767 ID=rna2767|Name=rna2767|organism=Nannochloropsis gaditana|type=CDS|length=3894bp|location=Sequence derived from alignment at CM002459.1:1152734..1155293+ (Nannochloropsis gaditana)
ATGGATCAATACGAGGTAACGAAGCTCATCTCCAAAAGCAGCTCGAGCCT
TGTGTATCTTGGTCGGAAGGAATGTGACGGTACACCCGTGGCGATTAAAA
AAACGAGTCTTGCCGGTCGCGACGCCAGAGCTCAGGAGAAATGTTTGCGG
GAGGCTCGCCTCATcacgtccctctcctccacccaccccAACCTTCTCTC
TTGCCTGGACGCCTTCCTGGTCGTCGAAAAGGGAGCACAGTCCTATTTGA
TCGTAGTGACGGAATgggccgaggcgggggaccTCGCCCGCGTGATCCGC
AAggcgcgaaaggaggagaggaggatacaTGGAGGGTTATGTGAGGCGCG
GGTCTGGGGATGCCTGGAGCAGCTTTGTGCAGGGATCGAGCATTTGCACA
AAGCCAGGATCGTTCACGGGGACTTGACACCCTCACACGTGCTTTTTGAT
GGGCAAGGGACGTTAAAGGTAGGCGGAGTCAGCATCTCGCAGTCGCGGGT
CAGACCACCCACCCTCCACGGCCATCCCCCTGAAgctgcccccgcctccc
aggcaatgggggcggggggaaagaagcgaaGGAAGCCAGTGCCGGTATAC
GCGCCCCCAGAGATCCTCCGGGGGGACGGGCCCGGGTGGAAGAGCGATAC
GTGGAGCCTGGGATGCCTGGCGTTTGAGATGGGCGCAGGGCGGCCCCCCT
ACCAGctcggcgagggcggggtggagggccttCTTGCAGCGATGGGTTCC
GGAGGAGAGGAACTGGCGTGGCCTGAAGGGTTCTCGAAGGAGCTTCGAGA
TTTGGTAAAATCCACGCTGTCGGTGGACCCGGCCCAACGCCCGGACGTGG
AGCGCGTCCGAGAAACGGCTCGGAGAATCGGAATTACACGGGGGGAAGGT
CCCCGGTGGGAacaaaggagaggaaacggggggggcgaaggccTTAGATG
GGTGGGAGCTATGGAAACGGGCGAGAATGTGGAGGCAGGGTcggagaagg
gatggagcGCATGGCCGACCTGCTCGCCCgcccgaggggggaggggaaag
ctaTTGGAAGGCCGGTGGACGAAGCAggcaggaaagaagaagggcgggaa
gagggaagaggcaaatACTGACCAAGGGCCAGAGACGGCCCTCCCCGCGA
GCGAGTCGCGAGCCACTGGGGGATCGCTTCCGGGACAGGGGGCCTTGACT
AGCGCCCTGGATGGAGCAGGCTCGGGGGgtcaaggagagggcagcaTGGC
GGCTTGGTCGAGCGAGGACGATACAGGGCCGCAGGGCCGTCGGCAGGAGG
ACCCTCTGGAGGCAGTCGTGGCCAGATTGTCCCTCCAGCCCCGTTCGAGA
GCAGTGGGCACCGAAATGGGCTGGCAGGGCCCCGGAAACATCCCACAGTC
TCCATCGAGGGGCTTGGGGCCCACAGGGCTGGAGGCCAGGGGCGGGAGTC
CGGAGCCTTTGGGTCGACCTATAGGAGCAACAGGTCGTGAGGAGCGGCCG
TGCACGGTCGAAAGCATGCAGGCGGGCATTCGCTGCCTCCAGGGTCAGCT
TCAGTCGCTCCAGTCcaaggtggcggagaaacatCGTCGGATCCGCGATC
TTGACGCGGCCCTTCTCCGAGTGGAGTGGGCACTTGctgacaggagggag
ggaaagggattGGGACGCTCCGAGGTTagtgaaaagaaagggattGTGTA
TGGAAAGAGCGGCCTGGGGTTGATGGAGGTGCGAGAGACTGTGAAGCAGt
tgcaggaggaaaatcgGGAGATGCGCCTGAGGACAGGGTTTCTTTTGCAA
ATGCTTGGAGAGCTACGGGCAAGAAAGGCGGAAGATGCCCGGAGGAAGCG
CCAGAGGCTGAGACGGGGGCAGCAGTTCCAACGAAGGAGGGTGTGGGGAG
ATGGAAAGAGCGCGGAGAAGTCAGGGTGGGAGGCTGACGGGCTGTGAATG
GATCAATACGAGGTAACGAAGCTCATCTCCAAAAGCAGCTCGAGCCTTGT
GTATCTTGGTCGGAAGGAATGTGACGGTACACCCGTGGCGATTAAAAAAA
CGAGTCTTGCCGGTCGCGACGCCAGAGCTCAGGAGAAATGTTTGCGGGAG
GCTCGCCTCATcacgtccctctcctccacccaccccAACCTTCTCTCTTG
CCTGGACGCCTTCCTGGTCGTCGAAAAGGGAGCACAGTCCTATTTGATCG
TAGTGACGGAATgggccgaggcgggggaccTCGCCCGCGTGATCCGCAAg
gcgcgaaaggaggagaggaggatacaTGGAGGGTTATGTGAGGCGCGGGT
CTGGGGATGCCTGGAGCAGCTTTGTGCAGGGATCGAGCATTTGCACAAAG
CCAGGATCGTTCACGGGGACTTGACACCCTCACACGTGCTTTTTGATGGG
CAAGGGACGTTAAAGGTAGGCGGAGTCAGCATCTCGCAGTCGCGGGTCAG
ACCACCCACCCTCCACGGCCATCCCCCTGAAgctgcccccgcctcccagg
caatgggggcggggggaaagaagcgaaGGAAGCCAGTGCCGGTATACGCG
CCCCCAGAGATCCTCCGGGGGGACGGGCCCGGGTGGAAGAGCGATACGTG
GAGCCTGGGATGCCTGGCGTTTGAGATGGGCGCAGGGCGGCCCCCCTACC
AGctcggcgagggcggggtggagggccttCTTGCAGCGATGGGTTCCGGA
GGAGAGGAACTGGCGTGGCCTGAAGGGTTCTCGAAGGAGCTTCGAGATTT
GGTAAAATCCACGCTGTCGGTGGACCCGGCCCAACGCCCGGACGTGGAGC
GCGTCCGAGAAACGGCTCGGAGAATCGGAATTACACGGGGGGAAGGTCCC
CGGTGGGAacaaaggagaggaaacggggggggcgaaggccTTAGATGGGT
GGGAGCTATGGAAACGGGCGAGAATGTGGAGGCAGGGTcggagaagggat
ggagcGCATGGCCGACCTGCTCGCCCgcccgaggggggaggggaaagcta
TTGGAAGGCCGGTGGACGAAGCAggcaggaaagaagaagggcgggaagag
ggaagaggcaaatACTGACCAAGGGCCAGAGACGGCCCTCCCCGCGAGCG
AGTCGCGAGCCACTGGGGGATCGCTTCCGGGACAGGGGGCCTTGACTAGC
GCCCTGGATGGAGCAGGCTCGGGGGgtcaaggagagggcagcaTGGCGGC
TTGGTCGAGCGAGGACGATACAGGGCCGCAGGGCCGTCGGCAGGAGGACC
CTCTGGAGGCAGTCGTGGCCAGATTGTCCCTCCAGCCCCGTTCGAGAGCA
GTGGGCACCGAAATGGGCTGGCAGGGCCCCGGAAACATCCCACAGTCTCC
ATCGAGGGGCTTGGGGCCCACAGGGCTGGAGGCCAGGGGCGGGAGTCCGG
AGCCTTTGGGTCGACCTATAGGAGCAACAGGTCGTGAGGAGCGGCCGTGC
ACGGTCGAAAGCATGCAGGCGGGCATTCGCTGCCTCCAGGGTCAGCTTCA
GTCGCTCCAGTCcaaggtggcggagaaacatCGTCGGATCCGCGATCTTG
ACGCGGCCCTTCTCCGAGTGGAGTGGGCACTTGctgacaggagggaggga
aagggattGGGACGCTCCGAGGTTagtgaaaagaaagggattGTGTATGG
AAAGAGCGGCCTGGGGTTGATGGAGGTGCGAGAGACTGTGAAGCAGttgc
aggaggaaaatcgGGAGATGCGCCTGAGGACAGGGTTTCTTTTGCAAATG
CTTGGAGAGCTACGGGCAAGAAAGGCGGAAGATGCCCGGAGGAAGCGCCA
GAGGCTGAGACGGGGGCAGCAGTTCCAACGAAGGAGGGTGTGGGGAGATG
GAAAGAGCGCGGAGAAGTCAGGGTGGGAGGCTGACGGGCTGTGA

Synonyms

Publications