rna2759, rna2759 (mRNA) Nannochloropsis gaditana

Overview
Namerna2759
Unique Namerna2759
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1935
Alignment locationCM002459.1:1136216..1136935 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100285g4.3546.mrna
Orig protein idgnl|cribi|Naga_100285g4.3546
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1136216..1136935 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100285g4gene2640Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2759rna2759-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27925.1cds2751Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2759 ID=rna2759|Name=rna2759|organism=Nannochloropsis gaditana|type=mRNA|length=1935bp
ATGATGACGCACGAAGACTACAAGGACGCTTCCGTGGTTGATCAGACACC
TACGAACAATTTGGCCGTCAAAATTCAGCATAAATTGGAATGGCATGTGG
AATCTTTCAAGGTTCAGATTCGTCGCAGCCGTGCTCCCGGCAAAGGAACA
GCTTCAACAACAACCCAAACAACCAAAACTATATTGCAAAAAGTAGCGGG
TTGCGCGGTCAGTGGGGAGCTTACAGCAATCCTAGGGCCCTCAGGTGCAG
GTAAAACAACGCTGCTAGAATGCATCTCGCTGCGGAACAGGAATTTCGAT
GGTTGTGTGCAGTATGACGGGCAGGCCCCCGAGGGGAGGTTCTTCACACT
CTCAGCCTTTGTCCACCAGGCAGACATGCTGTATGGCTTTCTAACACCCC
GAGAGCATTTGACTTTTCACGCGATCGCTCGGATGAGCGGTGGTAGTCGG
ACAGCTGCGCGGGGACTGCCCGAGCCGGGTGCCTCCCAGACATCCCGTGG
ACAAAGCTGGCAGGCAGAGAAAATGTCTTCAGAAAGCATGGCGAGACGGG
TCGAAGAAGTGATTGCGACCGTAAAACTGGAGAAATGTGCCGACACCTTG
ATCGGGGGTTCGGACCCCGTGTTTAACGTCAAGGGTATTTCGGGGGGAGA
ACGCAAACGGCTGACGATCGCAACCGAGCTTTTGCAGACGAACGAGATAA
TCTTCCTGGACGAGCCGTCCTCGGGCCTCGATTCAGTCATGTCGGAATCG
ATTTTTCAAACCCTCAAGGACTTGACGACCCAAGGCCGGATCGTCATCGC
CACCGTCCATTGCCCCTCCTCCAAGACCTACCACCTCTTCTCGAACCTGA
TCCTCCTCACCTGCGACGGCCGCCTGGCGTACTCCGGCCCTGCCGCACAG
GCCCTGTCGTATTTCCAGGCCGCGTTGGGAATTGAATGTCCGCAGCATTA
CAACCCGGCGGATTTTGTCCTGGAGCTGGTGTCGGCGGAACCGGGGGTGC
CCCTCCAAGAAGAACTCCGGCGCATGGACGCCCTCTCTCTTGCGTACGCG
CAGTCGTTCATGAAAATTCAGAACCCGCTGCCTGCCGATGACAAGCACAA
GGCCTTGCACGACGTGCGTGGACAAGGTGCGAGCGATTGGGTTTTCTTCA
AGCTGAACTTATGGCGGGGCGGCTTGCAGCTGGCCCGGGACCGGATAACG
TTGATCCTTTGGGCCGCCGTGAGTGCCTTGATAGGTGCGCTGTTTGGGGT
CCTGTACTGGCAACTGGCGGCGAGCAATTGGCGCAACCTGATGGGCCTGA
TCTTTTCGGCCGTGGTGGGGAACGTGTTCACGGGCTGCCTGGGAGTGGTG
ATGCGTTTTCCCATGGAGTGGACCCTGGTAGTCCGAGAGTTTTCCAGCGG
CGCGAACGCCGTGGGCCCCTACATGATCGCCCGCTTCTTCACCACCTTGC
CCCTGTCCTACGGCCCAGTCCTGATGTCTTCAATCATCTATTGGTGCACC
GGCATGGATCCCGACGCCGGAACCTACCTGATCTTCGTCTTGATCTTCGT
CTCCTTCAACTGGTCCTGTTTCTCGCTCGGGCAGTGGATCTCCTCCTTCT
CCGCCAATCCGCTGGTGGCGATGACGATCATGCCAGGCTTTGTAACCCCC
ATGATCATGTTCTCCGGCCTCCTGATCGAGCGCAGCAGTGTGCCCGTCTG
GCTGGCCTGGATCGAAGACGTCTCCGTCGTCAACTATGCCTTCGATACCT
TGATGGCCCAACAGATGCACATTTTGCCGGGGAACCAGGGAGAAGTGGTG
CAACAGTTCATCCAATTTAACCCCCGGAAAATGGGCTGGAATGTTGGAAT
GTTGTGGATCCTAACTGCAGCCTTCCAAGTGCTCACGTATGTGAATCTCA
GAGTGCGTCTGAGGGCATCCCGGTCCGTCAAGTAG
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protein sequence of rna2759

>rna2759-protein ID=rna2759-protein|Name=rna2759|organism=Nannochloropsis gaditana|type=polypeptide|length=198bp
MPDDAGGLSVQTWECRRRGWEEEKQGRGTQAMATANAVIHERRMRNNAKN
KVEDVYTGVVKMVSASGTTAGCLQFVEVWRGSSHEYHTWKRTTPIVGRPF
ITRSVGRMIMSIMRTSNVPMTIVRFSHRCMTIDHRGVIRWSWLTLIGAVL
HLNVSGRVWKKSTHKRGRKRREMNSWPFSNSHAPVVTGEKRHCGETKR
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mRNA from alignment at CM002459.1:1136216..1136935+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2759 ID=rna2759|Name=rna2759|organism=Nannochloropsis gaditana|type=mRNA|length=720bp|location=Sequence derived from alignment at CM002459.1:1136216..1136935+ (Nannochloropsis gaditana)
ATGCCGGACGATGCAGGGGGTTTGTCGGTGCAGACATGGGAGTGCaggcg
aagagggtgggaagaggaaaagcagggacGGGGAACGCAGGCAATGGCTA
CCGCCAATGCGGTTATCCATGAGCGTAGGATGAGGAATAACGCGAAGAAC
AAGGTCGAGGACGTTTATACGGGCGTCGTTAAGATGGTAAGCGCATCAGG
GACGACTGCGGGTTTGTGAATAAATCGATAGCGGATCATGGGTGGTGATG
GTATCTCCAGGATGCAGAACCACTGAGGATGCCTCCAATTCGTAGAGGTG
TGGCGAGGATCATCGCATGAGTACCATACATGGAAAAGGACTACTCCGAT
TGTGGGAAGACCCTTCATAACGAGAAGTGTCGGGAGGATGATAATGAGTA
TCATGAGGACGAGCAATGTGCCAATGACGATCGTGAGATTTTCTCATCGT
TGTATGACGATAGATCATCGAGGAGTGATAAGATGGAGTTGGTTGACCTT
AATCGGAGCTGTCTTACATTTAAATGTTTCTGGTAGAGTTTGGAAGAAAA
GCACGCATAAGAGAGGACGAAGTGGAAGAACACAGTGAGATACGTGCGAC
AGAAGGTGAATTTTTGACAGGAGTAAAGAAAGGCGTGAAATGAACTCGTG
GCCATTTTCTAATTCACATGCTCCTGTCGTAACCGGTGAGAAGAGACACT
GTGGAGAAACAAAGCGATAG
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Coding sequence (CDS) from alignment at CM002459.1:1136216..1136935+

>rna2759 ID=rna2759|Name=rna2759|organism=Nannochloropsis gaditana|type=CDS|length=1791bp|location=Sequence derived from alignment at CM002459.1:1136216..1136935+ (Nannochloropsis gaditana)
ATGCCGGACGATGCAGGGGGTTTGTCGGTGCAGACATGGGAGTGCaggcg
aagagggtgggaagaggaaaagcagggacGGGGAACGCAGGCAATGGCTA
CCGCCAATGCGGTTATCCATGAGCGTAGGATGAGGAATAACGCGAAGAAC
AAGGTCGAGGACGTTTATACGGGCGTCGTTAAGATGGTAAGCGCATCAGG
GACGACTGCGGGATGCCTCCAATTCGTAGAGGTGTGGCGAGGATCATCGC
ATGAGTACCATACATGGAAAAGGACTACTCCGATTGTGGGAAGACCCTTC
ATAACGAGAAGTGTCGGGAGGATGATAATGAGTATCATGAGGACGAGCAA
TGTGCCAATGACGATCGTGAGATTTTCTCATCGTTGTATGACGATAGATC
ATCGAGGAGTGATAAGATGGAGTTGGTTGACCTTAATCGGAGCTGTCTTA
CATTTAAATGTTTCTGGTAGAGTTTGGAAGAAAAGCACGCATAAGAGAGG
ACGAAAAAGGCGTGAAATGAACTCGTGGCCATTTTCTAATTCACATGCTC
CTGTCGTAACCGGTGAGAAGAGACACTGTGGAGAAACAAAGCGATAGATG
CCGGACGATGCAGGGGGTTTGTCGGTGCAGACATGGGAGTGCaggcgaag
agggtgggaagaggaaaagcagggacGGGGAACGCAGGCAATGGCTACCG
CCAATGCGGTTATCCATGAGCGTAGGATGAGGAATAACGCGAAGAACAAG
GTCGAGGACGTTTATACGGGCGTCGTTAAGATGGTAAGCGCATCAGGGAC
GACTGCGGGATGCCTCCAATTCGTAGAGGTGTGGCGAGGATCATCGCATG
AGTACCATACATGGAAAAGGACTACTCCGATTGTGGGAAGACCCTTCATA
ACGAGAAGTGTCGGGAGGATGATAATGAGTATCATGAGGACGAGCAATGT
GCCAATGACGATCGTGAGATTTTCTCATCGTTGTATGACGATAGATCATC
GAGGAGTGATAAGATGGAGTTGGTTGACCTTAATCGGAGCTGTCTTACAT
TTAAATGTTTCTGGTAGAGTTTGGAAGAAAAGCACGCATAAGAGAGGACG
AAAAAGGCGTGAAATGAACTCGTGGCCATTTTCTAATTCACATGCTCCTG
TCGTAACCGGTGAGAAGAGACACTGTGGAGAAACAAAGCGATAGATGCCG
GACGATGCAGGGGGTTTGTCGGTGCAGACATGGGAGTGCaggcgaagagg
gtgggaagaggaaaagcagggacGGGGAACGCAGGCAATGGCTACCGCCA
ATGCGGTTATCCATGAGCGTAGGATGAGGAATAACGCGAAGAACAAGGTC
GAGGACGTTTATACGGGCGTCGTTAAGATGGTAAGCGCATCAGGGACGAC
TGCGGGATGCCTCCAATTCGTAGAGGTGTGGCGAGGATCATCGCATGAGT
ACCATACATGGAAAAGGACTACTCCGATTGTGGGAAGACCCTTCATAACG
AGAAGTGTCGGGAGGATGATAATGAGTATCATGAGGACGAGCAATGTGCC
AATGACGATCGTGAGATTTTCTCATCGTTGTATGACGATAGATCATCGAG
GAGTGATAAGATGGAGTTGGTTGACCTTAATCGGAGCTGTCTTACATTTA
AATGTTTCTGGTAGAGTTTGGAAGAAAAGCACGCATAAGAGAGGACGAAA
AAGGCGTGAAATGAACTCGTGGCCATTTTCTAATTCACATGCTCCTGTCG
TAACCGGTGAGAAGAGACACTGTGGAGAAACAAAGCGATAG
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Synonyms
Publications