rna2746, rna2746 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2746
Unique Name	rna2746
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1989
Alignment location	CM002459.1:1108621..1111107 -

Link to JBrowse

Properties


Property Name	Value
Product	nad-dependent epimerase dehydratase family protein
Orig transcript id	gnl\|cribi\|Naga_100008g124.7841.mrna
Orig protein id	gnl\|cribi\|Naga_100008g124.7841
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:1108621..1111107 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100008g124	gene2627	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2746	rna2746-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27949.1	cds2738	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:1108621..1111107-
coding sequence from alignment at CM002459.1:1108621..1111107-

mRNA sequence

>rna2746 ID=rna2746|Name=rna2746|organism=Nannochloropsis gaditana|type=mRNA|length=1989bp
GGATACTTTAATTGGAAAAACATCTCAAGCAACCACTTAACTTTAAAGCT
AGGCATGTGGCTAGCAGCGATACTATCTGCACAGAAAAGGGTTTCCTACA
GAGGATTGCAGCTGGCGGCGGCCACGCTCTGTCTTCTCAGTGGCCAGGCG
CGTAGAGATCGTCTATGCCTTTTTTCCTGTGCGTTCTCTACTTCCCCTTC
GCAGTCGCCATCACCACCGGCAATACCTGCGTGTCATCCAACTACATTCA
CTGGTCAATCTGTTCGCACTATTTTAGTCGTAGGCGACGGGGACTTCTCT
TTTTCAGCGGCACTTCTCCCTTGGTTGCCTCCAAATGTGAAACTTGTTAC
GACATGCTTGCAGAGAGACGAGGACGATTTGATACAAAGGTACCCAGCCG
CCGCAAGAAACCTCCAAATGCTTCGTGAGCAAAAAAGCGGTAAAGGTTCT
TTGGGAAATGCAATAGGATTTGGCCTGGATGTTATGTCATCTACGTTCAT
AGCTTCAGCTTTAGCTCATATAACTGCTCCAGAGGATCTGAATAGCCCAT
CACGTTGGCAAAAGATACAGAAGATAGAAACGCGCTCCTCGCAAAATGGA
AAGGATTTGTCATATTCGTTCAATGACCTTGCGCTACCAGGGAAAATCTC
CAGCAAGTACGATCGTGTCATTTTTAATTTCCCCCACGTCCCCGGCAAGA
GTAATATCAAGATGAACCGTGCATTACTCAGCGCGTTCTTAAGCAAGTCA
GCACACATCCTCCAAAATCCTGGCGGAGAAGTCCTGCTCGCGCTTTGCCG
GGGTCAAAGCGGTGTGGAAGCCCGGGATAAGCGGGCATACAAGGCCTCGT
GGCGATTGCCAGGGTTCGCGGCCGATGCAGGTCTAGCCATATACAGCAAC
GAAGCATTCCCGGTCCGTGACACGAGATATGTCAAAGGTATGTATCAGCC
GTCAGGGCACCGAGACGGGGGGAAATCCTCGTACGTCTACGATGGAAAGG
ATCCCAAGCTTTACACGCTGCTCCGACCGTTCCCCTCCTCCTCTGCCTCC
GGGCCTTCTTTTTTGCATCGCAAAGCCATATACGGCCCAGTATACGCGCA
TGAGGTACACCTTTGGATCAGTCCTTGGTTGCAAATGAAAAGCCACTCGG
AAGTCGCGTCTCTACTTAAAATTGCTATTGGAAAATGCCTCGGACCGGAG
GACGCGAGGCTAGTCGCAAAAGTGACGTACACAGAAAGCTACTTGTCTCC
GACACCGTCGCATCAGCCCAAAAACCGAAACAGCGGTTTCAGCAGCAGCG
AATTGGAGGAAGAAAAAGTGGATTTTGCTTTGCAGGAGTCACGCGCCTTC
GAGGTGCAATATGCCTGGCGAGAAGGCGGGGCATTGACCCGCGATAGAGC
GGATGAGCTGCGGCAACGCGTAGAGGATGGTTTGAAACAGCTTTCTTCGG
GCCGTTGTTCCTCCGAAAGGAAAGATATGCATGACACAGCAGGACAAGGA
CAGAGGAGTCTTGTGGGCGAAATTTTGTTGCACAAGGCTGGCCTGCCCGT
GGGAGACGTGACCCCATTGGCTGCACCTACTGTGTTTCAAGCCTTGTAAA
AGTATGTGCCTCATAAAACCTTCTGTATTGTGACCATCTACAGAGAGGAA
GCTTGAAGCTAGCGATCTTCATCAAAATTTCTGCACAGAAGATGGGATGC
ACGCGAGCCTTCCTGACCTACCTATTTCTCTCGTCCCTTGGGGAATTTTC
TTGGTCCCTTTCGGACTCGCCCGTTCAAGGAGCATACAGCCATCGATCAT
TGTGTCCCCATACCACGAATTGTCTACAAATGATGTTTGTCGAATATAGT
TTTGTGATTTATCTTGTAAAGGCCTTCTACATACGTGTGAGATTCAAAAT
CGAGGGCCTCGGAACGCAAAAGCTTGTAATCCGTGTGCTAGATTGTCTGT
AAAATCGGTCGTTTTTTCTTTGTAAAAGCTATTACTGGC

protein sequence of rna2746

>rna2746-protein ID=rna2746-protein|Name=rna2746|organism=Nannochloropsis gaditana|type=polypeptide|length=366bp
MVSALPSVKVLVTGGGGFLGRYLCQVLLRRKRLNGRALDSIAILDTGADT
HVPCDTKVQVFPHGPTNQASSAIRVENFRGDITDRKLVEKAMQPGSEGGH
VTIFHLASVMSGEGEEEFDKCVAVNLDGTQNLLEKARALHASGRVGEKPV
RFVFPSSFAAFGPHPEVSDETKLTPQSTYGMTKAVGELMVNDYTRKGWVD
GRTGRLPTVIVRPGNKNGASTGCFSAVVRELLMGHDYVIPYDPRQTHPVI
STRRTIKGLLALAEVEGESLGGDRSVNLPALQTTMEELLFHTRQIAQGRG
IPMGEVSVKIDPWVSGIVGRFPQVMRSPRAETLGLPRDGSVEAVIEDYVD
EFLDDEMKDDYPLFSI

mRNA from alignment at CM002459.1:1108621..1111107-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2746 ID=rna2746|Name=rna2746|organism=Nannochloropsis gaditana|type=mRNA|length=2487bp|location=Sequence derived from alignment at CM002459.1:1108621..1111107- (Nannochloropsis gaditana)
GCGATAAAAAAACAGCATGTCTCGCAGGTACAATGTTTGATCCTACAGCG
ACGCCTGAAGTACAATTCCTAGGCCTCATTTTAACGAGGCTGAGAGTTTA
AAGCCTTTTCATGGCCATTGCGCACGAGCCAAAGGACATGGCGGGAGTGC
ACGATGGACAATGCCACCAACATGATCCGCTTTTTCTACTTTGTGGGGGA
TGGGGACGTGGGAGGTGTCTGATCATATAGATCAAAATACCACGCAAGGG
CGTCGACACATCTCTGCGCAACGTTCCTGTGTCAGGAAGACACGAAAAAA
CTTGGCATTCATGGCCAAGATCGCATGCGAAGGCAGAAATGAGGAAGGAT
CCGGTGTGCCATTTTTCCTGTGTGTGGTGTCCTTCAAGTTATCTGCTTGC
ACTTAGGTCACGCTCTCAGCCCCGCTCAGCCCGTCAAAAATGCGCCGCAC
ACAGACACATGTCAAGTCAACCTGTGTGCCATGCCTCACAACACCACACA
AATCACACAGGATCTGGTGCTACCAAAGGGAGAAGCTGATCATTGGCGTG
CTGCATTAGGAGTGCTGGCATCCTCCACTTCACTATGGTGTCTGCGCTAC
CCAGCGTCAAAGTCTTAGTTACCGGTGGCGGCGGGTTTTTAGGCAGATAC
TTGTGTCAGGTATTACTACGAAGAAAACGACTCAATGGTCGGGCCCTGGA
TAGCATCGCCATTCTTGACACAGGCGCGGATACTCATGTGCCCTGTGATA
CAAAAGTCCAAGTCTTCCCGCATGGACCTACCAACCAAGCATCTTCCGCC
ATCAGAGTGGAGAACTTCAGAGGGGACATAACAGACCGCAAGCTGGTGGA
GAAAGCCATGCAGCCGGGGTCGGAGGGGGGCCACGTCACAATATTCCACC
TGGCCTCGGTGATGAGCGGGGAGGGCGAGGAGGAGTTTGATAAATGTGTA
GCCGTCAACCTGGGTGAGTATTTCTTCCCCTTCATACGTGTGACACGCAT
AAATGGGCATCTTTCTGGGCGTTCCGGACGCGCCCGTGTCCAAGGTGGCC
ATTGATGGCTCGAAAGGACATCCTTTTTTACCATCTCCAATCCTCCCCTA
TCGCCCACAGATGGCACGCAAAACCTGTTAGAGAAAGCCCGTGCCCTACA
CGCCAGCGGTCGAGTAGGGGAGAAGCCTGTCCGCTTCGTCTTCCCTTCCT
CTTTCGCTGCCTTTGGGCCGCACCCGGAGGTGAGTGACGAGACGAAACTC
ACCCCGCAAAGTACCTACGGGATGACGAAGGCAGTGGGGGAGCTTATGGT
CAACGACTACACGCGGAAAGGGTGGGTAGACGGCCGCACGGGTCGGTTGC
CGACGGTGATCGTTCGGCCGGGGAACAAGAATGGGGCGTCGACGGGATGT
TTCTCGGCAGTGGTTCGGGAGCTCTTGATGGGCCACGACTACGTGATTCC
CTATGACCCCCGCCAGACCCACCCCGTGATCAGCACCCGGCGCACGATCA
AGGGGCTCCTGGCCTTGGCCGAGGTGGAGGGGGAGTCCTTGGGGGGGGAT
CGAAGCGTGAACCTCCCGGCGTTGCAAACCACGATGGAGGAGCTCTTGTT
CCACACCCGGCAAATCGCCCAGGGGCGTGGGATCCCCATGGGGGAGGTGT
CTGTCAAGATCGATCCGTGGGTCAGTGGGATAGTGGGCAGGTTCCCGCAG
GTCATGCGAAGTCCACGCGCAGAAACCTTGGGTCTTCCAAGAGACGGGAG
CGTGGAGGCCGTCATCGAAGACTATGTGGACGAGTTTTTGGACGACGAGA
TGAAGGACGATTACCCTCTCTTCTCGATCTAAGAAGGCGAAATTCAGGTC
GGTGTACCGGGTGTGAATGGGAAAGAATCTGTGCGAACGGCGGGGATTCA
AGCTAAGCTTCCGGCAAGTGTGCATTTGTACATCTTAGGAAGAATTAGGT
TCGGAGGGAGGAGCATACGAGTAAGGCCGATTGATACGAGATTCTAGTAG
GAGGAGCAGATTCTCGATTCCCTGCCGATGCGACGATAAAAACGTTCAAT
TCGGTGAGGACCGCAAGAAGTGGCGAGGAAAGCGCTGTGCGTACGACGCA
ATTCGAATGCCGGTAATCCATGCGCGGAAGCGAATCAGAATCCTACAAGG
GACCTTGTAGAAAGCTTTATGGCACATCAAGTAATTGCTGATAATGAAAA
CAAGAACACGATTTTTATGTATACCAACTATACCTCAAGCTTTCGCAAGG
ATTCATGCCAAAGCGATAAGATTCTGGCTCACGGTTATCATGAGAATGAG
ATCGTTGGTTTGCCTTCCGAATGGAAACATAAGCGATGTGATGAATTTCA
GCTTTATGGCGTTCTTAATCATAGGCACCGAAGCAAGGATGGTTTCCTCT
CTCACTTTTACGCGAGCTATAAGCGATGAAGCCAGAGTCAGGATGGAAGA
GCGCTGATGAGATATCAAGAATTTGTTGGGAGCGGCC

Coding sequence (CDS) from alignment at CM002459.1:1108621..1111107-

>rna2746 ID=rna2746|Name=rna2746|organism=Nannochloropsis gaditana|type=CDS|length=2202bp|location=Sequence derived from alignment at CM002459.1:1108621..1111107- (Nannochloropsis gaditana)
ATGGCACGCAAAACCTGTTAGAGAAAGCCCGTGCCCTACACGCCAGCGGT
CGAGTAGGGGAGAAGCCTGTCCGCTTCGTCTTCCCTTCCTCTTTCGCTGC
CTTTGGGCCGCACCCGGAGGTGAGTGACGAGACGAAACTCACCCCGCAAA
GTACCTACGGGATGACGAAGGCAGTGGGGGAGCTTATGGTCAACGACTAC
ACGCGGAAAGGGTGGGTAGACGGCCGCACGGGTCGGTTGCCGACGGTGAT
CGTTCGGCCGGGGAACAAGAATGGGGCGTCGACGGGATGTTTCTCGGCAG
TGGTTCGGGAGCTCTTGATGGGCCACGACTACGTGATTCCCTATGACCCC
CGCCAGACCCACCCCGTGATCAGCACCCGGCGCACGATCAAGGGGCTCCT
GGCCTTGGCCGAGGTGGAGGGGGAGTCCTTGGGGGGGGATCGAAGCGTGA
ACCTCCCGGCGTTGCAAACCACGATGGAGGAGCTCTTGTTCCACACCCGG
CAAATCGCCCAGGGGCGTGGGATCCCCATGGGGGAGGTGTCTGTCAAGAT
CGATCCGTGGGTCAGTGGGATAGTGGGCAGGTTCCCGCAGGTCATGCGAA
GTCCACGCGCAGAAACCTTGGGTCTTCCAAGAGACGGGAGCGTGGAGGCC
GTCATCGAAGACTATGTGGACGAGTTTTTGGACGACGAGATGAAGGACGA
TTACCCTCTCTTCTCGATCTAAATGGTGTCTGCGCTACCCAGCGTCAAAG
TCTTAGTTACCGGTGGCGGCGGGTTTTTAGGCAGATACTTGTGTCAGGTA
TTACTACGAAGAAAACGACTCAATGGTCGGGCCCTGGATAGCATCGCCAT
TCTTGACACAGGCGCGGATACTCATGTGCCCTGTGATACAAAAGTCCAAG
TCTTCCCGCATGGACCTACCAACCAAGCATCTTCCGCCATCAGAGTGGAG
AACTTCAGAGGGGACATAACAGACCGCAAGCTGGTGGAGAAAGCCATGCA
GCCGGGGTCGGAGGGGGGCCACGTCACAATATTCCACCTGGCCTCGGTGA
TGAGCGGGGAGGGCGAGGAGGAGTTTGATAAATGTGTAGCCGTCAACCTG
GATGGCACGCAAAACCTGTTAGAGAAAGCCCGTGCCCTACACGCCAGCGG
TCGAGTAGGGGAGAAGCCTGTCCGCTTCGTCTTCCCTTCCTCTTTCGCTG
CCTTTGGGCCGCACCCGGAGGTGAGTGACGAGACGAAACTCACCCCGCAA
AGTACCTACGGGATGACGAAGGCAGTGGGGGAGCTTATGGTCAACGACTA
CACGCGGAAAGGGTGGGTAGACGGCCGCACGGGTCGGTTGCCGACGGTGA
TCGTTCGGCCGGGGAACAAGAATGGGGCGTCGACGGGATGTTTCTCGGCA
GTGGTTCGGGAGCTCTTGATGGGCCACGACTACGTGATTCCCTATGACCC
CCGCCAGACCCACCCCGTGATCAGCACCCGGCGCACGATCAAGGGGCTCC
TGGCCTTGGCCGAGGTGGAGGGGGAGTCCTTGGGGGGGGATCGAAGCGTG
AACCTCCCGGCGTTGCAAACCACGATGGAGGAGCTCTTGTTCCACACCCG
GCAAATCGCCCAGGGGCGTGGGATCCCCATGGGGGAGGTGTCTGTCAAGA
TCGATCCGTGGGTCAGTGGGATAGTGGGCAGGTTCCCGCAGGTCATGCGA
AGTCCACGCGCAGAAACCTTGGGTCTTCCAAGAGACGGGAGCGTGGAGGC
CGTCATCGAAGACTATGTGGACGAGTTTTTGGACGACGAGATGAAGGACG
ATTACCCTCTCTTCTCGATCTAAATGGTGTCTGCGCTACCCAGCGTCAAA
GTCTTAGTTACCGGTGGCGGCGGGTTTTTAGGCAGATACTTGTGTCAGGT
ATTACTACGAAGAAAACGACTCAATGGTCGGGCCCTGGATAGCATCGCCA
TTCTTGACACAGGCGCGGATACTCATGTGCCCTGTGATACAAAAGTCCAA
GTCTTCCCGCATGGACCTACCAACCAAGCATCTTCCGCCATCAGAGTGGA
GAACTTCAGAGGGGACATAACAGACCGCAAGCTGGTGGAGAAAGCCATGC
AGCCGGGGTCGGAGGGGGGCCACGTCACAATATTCCACCTGGCCTCGGTG
ATGAGCGGGGAGGGCGAGGAGGAGTTTGATAAATGTGTAGCCGTCAACCT
GG

Synonyms

Publications