rna2744, rna2744 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2744
Unique Name	rna2744
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1062
Alignment location	CM002459.1:1101891..1104511 +

Link to JBrowse

Properties


Property Name	Value
Product	phenylalanine 4-monooxygenase
Orig transcript id	gnl\|cribi\|Naga_100008g120.7894.mrna
Orig protein id	gnl\|cribi\|Naga_100008g120.7894
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:1101891..1104511 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100008g120	gene2625	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2744	rna2744-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28002.1	cds2736	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:1101891..1104511+
coding sequence from alignment at CM002459.1:1101891..1104511+

mRNA sequence

>rna2744 ID=rna2744|Name=rna2744|organism=Nannochloropsis gaditana|type=mRNA|length=1062bp
ATGCTCCTCCGTTCTCCGACAAAGCTGGTCAGACATGGGCTTGTGCTTCG
TTCCTCTCTCTTCTCTAGCTTTGACGCAGACTGGCGACAACGACACTGCA
GCACAACGACTGAGACCATGGATAAAGGAGGAGTCACCTTGGGTTTTCTT
GGCTTAGGGCAAATGGGATCACGCATGGCAAGCAACTTGCTGGATAAAAC
GGACCTTCCAGTCGTAATTTATGACACAAATCCTAAATCAATGTCATCCC
TCGAAGCGAAAGGTGCTCGAGTTGCTGCCTCGGGCGAGGAGGTAGCACGC
CAAGCACATGTCATTATGACCATGCTCCCGGCCACGCAACACGTCCAGGC
TGTATTCGGTGACATTATCATCCCTCACGCCCGGAAGGGAACGCTATTGA
TTGACGGTAGCACGATTGATCCCACGGCAAGCAAGGCCCTGGCCGCCCGA
GCCAAAACGATGGGGCTGGACATGGTGGATGCGCCTGTCAGTGGTGGAGT
AGGCGGTGCCGAAGCAGGAACATTAACATTCATGGTGGGTGGAGACGTGC
AATGCGTTAAAAAGGCAGAAGTGTCCATGCTTAGGCACATGGGCAAGAAG
GTGGTGCACTGTGGACCTGTGGGCACGGGCGCTATCGCCAAGATATGTAA
CAACCTGATCCTTGGCATCAATATGGTGGGAGTTGCGGAAGCTATGCGGC
TAGGCGTGGCCCTGGGAATGGATCCGCACATTTTGAACGGCGTGGTCAAT
GCTTCCAGTGGTCGGAGTTGGGTTACGGAGACCTACAACCCGTGCCCAAC
GGTCGTTCCCTCCGCCCCGTCCTCCCACGATTATCAAGGCGGCTTCGCCT
CCAAGCTCATGCAGAAGGATCTTGGGATCGCAGGCGACGCCGCCAAGGTG
GTCGGAGTACCATTACCGTTGGGCGCCGCGGCGCAACAATTATACACTTT
GATGCAAGTCAATGATCTTGGCAATAAAGATTTTTCCAGCGTTTATCGCT
TTTTGGAGGGAGCGAGAGGGAGCGACAGCAGCAAGAATGAAACTGGTGGC
AAAAGGGAATAA

protein sequence of rna2744

>rna2744-protein ID=rna2744-protein|Name=rna2744|organism=Nannochloropsis gaditana|type=polypeptide|length=534bp
MALIQHVMTKKLSRALLARHKGAPLCRSLRTLLPNEQKPPDPSSSSPSPL
HLSPASQSLSRVWRSFSSSTTTVVSTEEYPNAHHPEAAEYLKRSSVAVEE
DDKDPFFDKTSALMEVEDRPGALAEMLSYFAAHHVNITRLESRPSKKQYD
DQGQGRLVFDMYVDFEGSRGIARVDALLQELGEHSRSLLVLDRTEVPWFP
RQAWQLDTIANRVLDAGVDLTSDHPGFSDPVYRARRGELAQIARQYRHGE
TIPHIAYMPAEIATWSAVFRRQDELLRRYACREYLDILALMKEECGYGPE
SIPQQADITRFLARRTDFRLRPVAGLLSSRDFLNGLAFRVFFCTQYIRHH
SRPLYTPEPDICHELLGHAPLFADPDFADFSNEIGLASLGASDEEVKKLA
ACYWHSVEFGLCRQHAAGTELSQEQGNETASSIKAYGAGLLSSFGELEYA
CGGEEGKEGGPTFLPWDPEVAAVQSYPITTYQPVYFVAESLLDAKEKMRR
YCEKKMSRPFYARYMPEVQSIWVDRAVRVGKKVG

mRNA from alignment at CM002459.1:1101891..1104511+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2744 ID=rna2744|Name=rna2744|organism=Nannochloropsis gaditana|type=mRNA|length=2621bp|location=Sequence derived from alignment at CM002459.1:1101891..1104511+ (Nannochloropsis gaditana)
CGTGGCGATACCTGCTTCAATAAAATGCCAGCCCCGGGCCATTCCACCCC
GGTCCGAAACCATTCTTTTGACGGTCGCTTGCATTCCACATGTTGCTAGG
GAAAAATATGATCAATTGGCTATAGTAAACATTGTATTCTGGCTCCATTT
CGACGATAGGAAGGATAACTTGGTGACTTATCCCCCCTAACAAGCGTGAC
AtcatttctttttttccacaCTCCCACCGGACAAAGGATCTACGTTCACA
AAGCCACAGGCTGTGTGTTAGGCGATAATACACATGGCTCTCATTCAGCA
CGTCATGACGAAGAAGCTCTCCAGAGCACTGCTGGCGCGTCATAAAGGTG
CCCCCTTGTGTCGATCCCTGCGTACCCTCCTTCCAAACGAGCAAAAGCCT
CCTGATCcttcatcgtcttccccttcgccatTGCACCTGTCGCCCGCAAG
CCAGTCCCTTTCACGTGTGTGGAgatcattttcctcctccactacgACCG
TCGTGAGCACTGAGGAATACCCCAATGCGCACCATCCTGAAGCTGCCGAA
TACCTGAAACGGTCTTCAGTTGCcgtcgaggaagacgacaaaGACCCTTT
TTTCGACAAAACCTCAGCTTTGATGGAGGTTGAAGATCGACCCGGCGCTT
TGGCAGAGATGCTGTCTTATTTTGCCGCCCACCACGTCAACATCACCCGT
CTTGAGTCCCGGCCATCGAAAAAGCAATACGATGACCAAGGGCAGGGGCG
GTTGGTGTTCGACATGTACGTCGATTTTGAGGGATCGCGGGGGATCGCAC
GGGTGGATGCATTGCTCCAAGAACTGGGCGAGCACAGCCGTTCGTTGTTG
GTATTGGACAGGACGGAGGTCCCCTGGTTTCCCCGACAGGCCTGGCAACT
CGATACGATCGCGAACCGTGTACTCGACGCCGGTGTGGACTTGACCAGTG
ACCACCCGGGGTTCTCCGACCCTGTTTATCGGGCTCGGCGGGGCGAGCTT
GCTCAGATTGCCCGGCAATACCGGCACGGAGAGACGATTCCACACATTGC
TTACATGCCAGCAGAGATCGCGACCTGGAGCGCGGTGTTTCGCCGCCAAG
ACGAGCTCCTGCGTCGGTATGCCTGCCGGGAATACCTGGACATCTTGGCc
ttgatgaaggaggagtgcGGATACGGGCCTGAAAGCATTCCTCAACAGGC
GGATATCACCCGTTTCCTCGCCCGGCGTACCGACTTTCGGCTGCGCCCTG
TGGCAggcttgctctcctcccgggATTTTTTGAACGGCCTGGCTTTCCGG
GTATTTTTTTGCACCCAATACATTCGGTACGTGACTTTGCAATAGTAGTG
TCTGGTACCTAAACGTGCTTTGAATTTTGTGGTGGCTGATAGACATGACG
TCAATTTTGCTCGCTGGCAGGCACCATTCCCGTCCCTTGTACACACCAGA
ACCAGATATCTGCCACGAGCTCCTAGGGCATGCGCCGCTTTTTGCAGATC
CAGATTTTGCGGATTTTTCGAATGGTAGGGTCGATTTAAActcgggaggg
cgagggagggagggaagaagaacgaggaCGTTGTGGAGGCACGTGGCTAC
CACAAGGCCCCTTACGGAGGGTCAGGATAGCTGTTGGAGCGTAAGGCTTC
CTTCTAAACAACCCAATATTTCCCCCTGCCTCATATTCTCCAGAAATTGG
CCTGGCCTCTTTGGGTGCttcggacgaggaagtcAAAAAGCTAGCCGCGT
GCTATTGGCATTCCGTGGAATTTGGTCTCTGCCGGCAGCACGCAGCGGGG
ACGGAGCTTTCTCAGGAACAAGGCAACGAGACCGCTTCCAGCATCAAGGC
CTACGGGGCTGGTCTGTTGTCGTCTTTTGGTGAGCTGGAATACGCatgcg
ggggggaggaggggaaggagggaggcccgaCCTTCCTGCCGTGGGATCCC
GAGGTAGCGGCCGTGCAGTCGTATCCCATCACCACGTATCAACCTGTGTA
CTTTGTGGCCGAAAGTCTGCTCGATGCAAAGGAGAAAATGAGGAGGTACT
GTGAAAAGAAAATGAGCCGGCCATTCTACGCCCGTTACATGCCGGAGGTG
CAGAGCATATGGGTAGACAGAGCCGTGCGGGTGGGGAAAAAGGTGGGCTA
AGAGGACGTGAGGAAGTGAAGTAAGGGACAGGTGGCAACGGACATACTCC
GCACTCATTGAGTGACTGGGCCTTGCCACGACGCCAGCGTCAAGCGTCGA
GGCATGCCAGGtagcagggggaagggggggcagggaaaaaaatcaagTGA
GTGCCATACGCATTCTACTGTATCAACGCGAGCTTTGGAGTGGATCGGGA
tgcagagaaggaggtgatAGAAAGTTGTAGATGACTTCCTTTGGAGTGGA
CCGGGAtgcagagaaggaggtgatAGAAAGTTGTCGATGAGAAGGGTGTT
ACTCGATAGGGTCTAAAATACTGTACATTGCGGGGGGGATATACAGATCG
CTGAGTCACAGTAGCCGGGCTGTGAAGAAAGGGCCGTAAGAGATGGCTTG
ATGTAACATGAATGCTATCGATAGCGCCAGTAATAGCTTTTACAAAGAAA
AAACGACCGATTTTACAGACA

Coding sequence (CDS) from alignment at CM002459.1:1101891..1104511+

>rna2744 ID=rna2744|Name=rna2744|organism=Nannochloropsis gaditana|type=CDS|length=4815bp|location=Sequence derived from alignment at CM002459.1:1101891..1104511+ (Nannochloropsis gaditana)
ATGGCTCTCATTCAGCACGTCATGACGAAGAAGCTCTCCAGAGCACTGCT
GGCGCGTCATAAAGGTGCCCCCTTGTGTCGATCCCTGCGTACCCTCCTTC
CAAACGAGCAAAAGCCTCCTGATCcttcatcgtcttccccttcgccatTG
CACCTGTCGCCCGCAAGCCAGTCCCTTTCACGTGTGTGGAgatcattttc
ctcctccactacgACCGTCGTGAGCACTGAGGAATACCCCAATGCGCACC
ATCCTGAAGCTGCCGAATACCTGAAACGGTCTTCAGTTGCcgtcgaggaa
gacgacaaaGACCCTTTTTTCGACAAAACCTCAGCTTTGATGGAGGTTGA
AGATCGACCCGGCGCTTTGGCAGAGATGCTGTCTTATTTTGCCGCCCACC
ACGTCAACATCACCCGTCTTGAGTCCCGGCCATCGAAAAAGCAATACGAT
GACCAAGGGCAGGGGCGGTTGGTGTTCGACATGTACGTCGATTTTGAGGG
ATCGCGGGGGATCGCACGGGTGGATGCATTGCTCCAAGAACTGGGCGAGC
ACAGCCGTTCGTTGTTGGTATTGGACAGGACGGAGGTCCCCTGGTTTCCC
CGACAGGCCTGGCAACTCGATACGATCGCGAACCGTGTACTCGACGCCGG
TGTGGACTTGACCAGTGACCACCCGGGGTTCTCCGACCCTGTTTATCGGG
CTCGGCGGGGCGAGCTTGCTCAGATTGCCCGGCAATACCGGCACGGAGAG
ACGATTCCACACATTGCTTACATGCCAGCAGAGATCGCGACCTGGAGCGC
GGTGTTTCGCCGCCAAGACGAGCTCCTGCGTCGGTATGCCTGCCGGGAAT
ACCTGGACATCTTGGCcttgatgaaggaggagtgcGGATACGGGCCTGAA
AGCATTCCTCAACAGGCGGATATCACCCGTTTCCTCGCCCGGCGTACCGA
CTTTCGGCTGCGCCCTGTGGCAggcttgctctcctcccgggATTTTTTGA
ACGGCCTGGCTTTCCGGGTATTTTTTTGCACCCAATACATTCGGCACCAT
TCCCGTCCCTTGTACACACCAGAACCAGATATCTGCCACGAGCTCCTAGG
GCATGCGCCGCTTTTTGCAGATCCAGATTTTGCGGATTTTTCGAATGAAA
TTGGCCTGGCCTCTTTGGGTGCttcggacgaggaagtcAAAAAGCTAGCC
GCGTGCTATTGGCATTCCGTGGAATTTGGTCTCTGCCGGCAGCACGCAGC
GGGGACGGAGCTTTCTCAGGAACAAGGCAACGAGACCGCTTCCAGCATCA
AGGCCTACGGGGCTGGTCTGTTGTCGTCTTTTGGTGAGCTGGAATACGCa
tgcgggggggaggaggggaaggagggaggcccgaCCTTCCTGCCGTGGGA
TCCCGAGGTAGCGGCCGTGCAGTCGTATCCCATCACCACGTATCAACCTG
TGTACTTTGTGGCCGAAAGTCTGCTCGATGCAAAGGAGAAAATGAGGAGG
TACTGTGAAAAGAAAATGAGCCGGCCATTCTACGCCCGTTACATGCCGGA
GGTGCAGAGCATATGGGTAGACAGAGCCGTGCGGGTGGGGAAAAAGGTGG
GCTAAATGGCTCTCATTCAGCACGTCATGACGAAGAAGCTCTCCAGAGCA
CTGCTGGCGCGTCATAAAGGTGCCCCCTTGTGTCGATCCCTGCGTACCCT
CCTTCCAAACGAGCAAAAGCCTCCTGATCcttcatcgtcttccccttcgc
catTGCACCTGTCGCCCGCAAGCCAGTCCCTTTCACGTGTGTGGAgatca
ttttcctcctccactacgACCGTCGTGAGCACTGAGGAATACCCCAATGC
GCACCATCCTGAAGCTGCCGAATACCTGAAACGGTCTTCAGTTGCcgtcg
aggaagacgacaaaGACCCTTTTTTCGACAAAACCTCAGCTTTGATGGAG
GTTGAAGATCGACCCGGCGCTTTGGCAGAGATGCTGTCTTATTTTGCCGC
CCACCACGTCAACATCACCCGTCTTGAGTCCCGGCCATCGAAAAAGCAAT
ACGATGACCAAGGGCAGGGGCGGTTGGTGTTCGACATGTACGTCGATTTT
GAGGGATCGCGGGGGATCGCACGGGTGGATGCATTGCTCCAAGAACTGGG
CGAGCACAGCCGTTCGTTGTTGGTATTGGACAGGACGGAGGTCCCCTGGT
TTCCCCGACAGGCCTGGCAACTCGATACGATCGCGAACCGTGTACTCGAC
GCCGGTGTGGACTTGACCAGTGACCACCCGGGGTTCTCCGACCCTGTTTA
TCGGGCTCGGCGGGGCGAGCTTGCTCAGATTGCCCGGCAATACCGGCACG
GAGAGACGATTCCACACATTGCTTACATGCCAGCAGAGATCGCGACCTGG
AGCGCGGTGTTTCGCCGCCAAGACGAGCTCCTGCGTCGGTATGCCTGCCG
GGAATACCTGGACATCTTGGCcttgatgaaggaggagtgcGGATACGGGC
CTGAAAGCATTCCTCAACAGGCGGATATCACCCGTTTCCTCGCCCGGCGT
ACCGACTTTCGGCTGCGCCCTGTGGCAggcttgctctcctcccgggATTT
TTTGAACGGCCTGGCTTTCCGGGTATTTTTTTGCACCCAATACATTCGGC
ACCATTCCCGTCCCTTGTACACACCAGAACCAGATATCTGCCACGAGCTC
CTAGGGCATGCGCCGCTTTTTGCAGATCCAGATTTTGCGGATTTTTCGAA
TGAAATTGGCCTGGCCTCTTTGGGTGCttcggacgaggaagtcAAAAAGC
TAGCCGCGTGCTATTGGCATTCCGTGGAATTTGGTCTCTGCCGGCAGCAC
GCAGCGGGGACGGAGCTTTCTCAGGAACAAGGCAACGAGACCGCTTCCAG
CATCAAGGCCTACGGGGCTGGTCTGTTGTCGTCTTTTGGTGAGCTGGAAT
ACGCatgcgggggggaggaggggaaggagggaggcccgaCCTTCCTGCCG
TGGGATCCCGAGGTAGCGGCCGTGCAGTCGTATCCCATCACCACGTATCA
ACCTGTGTACTTTGTGGCCGAAAGTCTGCTCGATGCAAAGGAGAAAATGA
GGAGGTACTGTGAAAAGAAAATGAGCCGGCCATTCTACGCCCGTTACATG
CCGGAGGTGCAGAGCATATGGGTAGACAGAGCCGTGCGGGTGGGGAAAAA
GGTGGGCTAAATGGCTCTCATTCAGCACGTCATGACGAAGAAGCTCTCCA
GAGCACTGCTGGCGCGTCATAAAGGTGCCCCCTTGTGTCGATCCCTGCGT
ACCCTCCTTCCAAACGAGCAAAAGCCTCCTGATCcttcatcgtcttcccc
ttcgccatTGCACCTGTCGCCCGCAAGCCAGTCCCTTTCACGTGTGTGGA
gatcattttcctcctccactacgACCGTCGTGAGCACTGAGGAATACCCC
AATGCGCACCATCCTGAAGCTGCCGAATACCTGAAACGGTCTTCAGTTGC
cgtcgaggaagacgacaaaGACCCTTTTTTCGACAAAACCTCAGCTTTGA
TGGAGGTTGAAGATCGACCCGGCGCTTTGGCAGAGATGCTGTCTTATTTT
GCCGCCCACCACGTCAACATCACCCGTCTTGAGTCCCGGCCATCGAAAAA
GCAATACGATGACCAAGGGCAGGGGCGGTTGGTGTTCGACATGTACGTCG
ATTTTGAGGGATCGCGGGGGATCGCACGGGTGGATGCATTGCTCCAAGAA
CTGGGCGAGCACAGCCGTTCGTTGTTGGTATTGGACAGGACGGAGGTCCC
CTGGTTTCCCCGACAGGCCTGGCAACTCGATACGATCGCGAACCGTGTAC
TCGACGCCGGTGTGGACTTGACCAGTGACCACCCGGGGTTCTCCGACCCT
GTTTATCGGGCTCGGCGGGGCGAGCTTGCTCAGATTGCCCGGCAATACCG
GCACGGAGAGACGATTCCACACATTGCTTACATGCCAGCAGAGATCGCGA
CCTGGAGCGCGGTGTTTCGCCGCCAAGACGAGCTCCTGCGTCGGTATGCC
TGCCGGGAATACCTGGACATCTTGGCcttgatgaaggaggagtgcGGATA
CGGGCCTGAAAGCATTCCTCAACAGGCGGATATCACCCGTTTCCTCGCCC
GGCGTACCGACTTTCGGCTGCGCCCTGTGGCAggcttgctctcctcccgg
gATTTTTTGAACGGCCTGGCTTTCCGGGTATTTTTTTGCACCCAATACAT
TCGGCACCATTCCCGTCCCTTGTACACACCAGAACCAGATATCTGCCACG
AGCTCCTAGGGCATGCGCCGCTTTTTGCAGATCCAGATTTTGCGGATTTT
TCGAATGAAATTGGCCTGGCCTCTTTGGGTGCttcggacgaggaagtcAA
AAAGCTAGCCGCGTGCTATTGGCATTCCGTGGAATTTGGTCTCTGCCGGC
AGCACGCAGCGGGGACGGAGCTTTCTCAGGAACAAGGCAACGAGACCGCT
TCCAGCATCAAGGCCTACGGGGCTGGTCTGTTGTCGTCTTTTGGTGAGCT
GGAATACGCatgcgggggggaggaggggaaggagggaggcccgaCCTTCC
TGCCGTGGGATCCCGAGGTAGCGGCCGTGCAGTCGTATCCCATCACCACG
TATCAACCTGTGTACTTTGTGGCCGAAAGTCTGCTCGATGCAAAGGAGAA
AATGAGGAGGTACTGTGAAAAGAAAATGAGCCGGCCATTCTACGCCCGTT
ACATGCCGGAGGTGCAGAGCATATGGGTAGACAGAGCCGTGCGGGTGGGG
AAAAAGGTGGGCTAA

Synonyms

Publications