rna2743, rna2743 (mRNA) Nannochloropsis gaditana

Overview
Namerna2743
Unique Namerna2743
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length486
Alignment locationCM002459.1:1100520..1101581 -

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Properties
Property NameValue
Product3-hydroxyisobutyrate dehydrogenase
Orig transcript idgnl|cribi|Naga_100008g119.7887.mrna
Orig protein idgnl|cribi|Naga_100008g119.7887
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1100520..1101581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100008g119gene2624Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27995.1cds2735Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2743rna2743-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2743 ID=rna2743|Name=rna2743|organism=Nannochloropsis gaditana|type=mRNA|length=486bp
ATGTGTAGAGTTTGTGGGCCCTCGGTGGTGATTCCGACGAAAATGGAGAG
CGATGTTGCCTGGTGGTCGCGTCCGGGGCATTCCTTCTTAATTTTTTGCG
TGTTGGAGGATACAAATGCTCTGGATCCCCCCCTTTGTTTAATAGCATCC
TTCGATGCTTCAGAGAAAGCATGTAAGATTTTGCAGGCGGCAAACAAGAG
AAAGCCTTATGAAGCAGATGCGAAAGTACATCTGACGGAAGGCCCCTCGA
AGAGCGAGTGGATTTACGTCCGAAAGGGAGAAGCCAAGATCCAGGTTGTC
TCCCAGCAGCATCTGTACTTATCGCAGGAAAGCGCAACAAGTTTTAAAAC
CATTAGAAATGCTGCATTCTGCTCCTCGCTGGTCAAGAAACGGAAGTGTG
CATGCAAAGACATGTTGAATAGATGTGAAGTCGGTGACAAAAACATTACT
CGGGCCCTATTTTCTTTCCTATTCCCCCGTGTGTGA
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protein sequence of rna2743

>rna2743-protein ID=rna2743-protein|Name=rna2743|organism=Nannochloropsis gaditana|type=polypeptide|length=353bp
MLLRSPTKLVRHGLVLRSSLFSSFDADWRQRHCSTTTETMDKGGVTLGFL
GLGQMGSRMASNLLDKTDLPVVIYDTNPKSMSSLEAKGARVAASGEEVAR
QAHVIMTMLPATQHVQAVFGDIIIPHARKGTLLIDGSTIDPTASKALAAR
AKTMGLDMVDAPVSGGVGGAEAGTLTFMVGGDVQCVKKAEVSMLRHMGKK
VVHCGPVGTGAIAKICNNLILGINMVGVAEAMRLGVALGMDPHILNGVVN
ASSGRSWVTETYNPCPTVVPSAPSSHDYQGGFASKLMQKDLGIAGDAAKV
VGVPLPLGAAAQQLYTLMQVNDLGNKDFSSVYRFLEGARGSDSSKNETGG
KRE
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mRNA from alignment at CM002459.1:1100520..1101581-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2743 ID=rna2743|Name=rna2743|organism=Nannochloropsis gaditana|type=mRNA|length=1062bp|location=Sequence derived from alignment at CM002459.1:1100520..1101581- (Nannochloropsis gaditana)
ATGCTCCTCCGTTCTCCGACAAAGCTGGTCAGACATGGGCTTGTGCTTCG
TTCCTCTCTCTTCTCTAGCTTTGACGCAGACTGGCGACAACGACACTGCA
GCACAACGACTGAGACCATGGATAAAGGAGGAGTCACCTTGGGTTTTCTT
GGCTTAGGGCAAATGGGATCACGCATGGCAAGCAACTTGCTGGATAAAAC
GGACCTTCCAGTCGTAATTTATGACACAAATCCTAAATCAATGTCATCCC
TCGAAGCGAAAGGTGCTCGAGTTGCTGCCTCGGGCGAGGAGGTAGCACGC
CAAGCACATGTCATTATGACCATGCTCCCGGCCACGCAACACGTCCAGGC
TGTATTCGGTGACATTATCATCCCTCACGCCCGGAAGGGAACGCTATTGA
TTGACGGTAGCACGATTGATCCCACGGCAAGCAAGGCCCTGGCCGCCCGA
GCCAAAACGATGGGGCTGGACATGGTGGATGCGCCTGTCAGTGGTGGAGT
AGGCGGTGCCGAAGCAGGAACATTAACATTCATGGTGGGTGGAGACGTGC
AATGCGTTAAAAAGGCAGAAGTGTCCATGCTTAGGCACATGGGCAAGAAG
GTGGTGCACTGTGGACCTGTGGGCACGGGCGCTATCGCCAAGATATGTAA
CAACCTGATCCTTGGCATCAATATGGTGGGAGTTGCGGAAGCTATGCGGC
TAGGCGTGGCCCTGGGAATGGATCCGCACATTTTGAACGGCGTGGTCAAT
GCTTCCAGTGGTCGGAGTTGGGTTACGGAGACCTACAACCCGTGCCCAAC
GGTCGTTCCCTCCGCCCCGTCCTCCCACGATTATCAAGGCGGCTTCGCCT
CCAAGCTCATGCAGAAGGATCTTGGGATCGCAGGCGACGCCGCCAAGGTG
GTCGGAGTACCATTACCGTTGGGCGCCGCGGCGCAACAATTATACACTTT
GATGCAAGTCAATGATCTTGGCAATAAAGATTTTTCCAGCGTTTATCGCT
TTTTGGAGGGAGCGAGAGGGAGCGACAGCAGCAAGAATGAAACTGGTGGC
AAAAGGGAATAA
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Coding sequence (CDS) from alignment at CM002459.1:1100520..1101581-

>rna2743 ID=rna2743|Name=rna2743|organism=Nannochloropsis gaditana|type=CDS|length=1062bp|location=Sequence derived from alignment at CM002459.1:1100520..1101581- (Nannochloropsis gaditana)
ATGCTCCTCCGTTCTCCGACAAAGCTGGTCAGACATGGGCTTGTGCTTCG
TTCCTCTCTCTTCTCTAGCTTTGACGCAGACTGGCGACAACGACACTGCA
GCACAACGACTGAGACCATGGATAAAGGAGGAGTCACCTTGGGTTTTCTT
GGCTTAGGGCAAATGGGATCACGCATGGCAAGCAACTTGCTGGATAAAAC
GGACCTTCCAGTCGTAATTTATGACACAAATCCTAAATCAATGTCATCCC
TCGAAGCGAAAGGTGCTCGAGTTGCTGCCTCGGGCGAGGAGGTAGCACGC
CAAGCACATGTCATTATGACCATGCTCCCGGCCACGCAACACGTCCAGGC
TGTATTCGGTGACATTATCATCCCTCACGCCCGGAAGGGAACGCTATTGA
TTGACGGTAGCACGATTGATCCCACGGCAAGCAAGGCCCTGGCCGCCCGA
GCCAAAACGATGGGGCTGGACATGGTGGATGCGCCTGTCAGTGGTGGAGT
AGGCGGTGCCGAAGCAGGAACATTAACATTCATGGTGGGTGGAGACGTGC
AATGCGTTAAAAAGGCAGAAGTGTCCATGCTTAGGCACATGGGCAAGAAG
GTGGTGCACTGTGGACCTGTGGGCACGGGCGCTATCGCCAAGATATGTAA
CAACCTGATCCTTGGCATCAATATGGTGGGAGTTGCGGAAGCTATGCGGC
TAGGCGTGGCCCTGGGAATGGATCCGCACATTTTGAACGGCGTGGTCAAT
GCTTCCAGTGGTCGGAGTTGGGTTACGGAGACCTACAACCCGTGCCCAAC
GGTCGTTCCCTCCGCCCCGTCCTCCCACGATTATCAAGGCGGCTTCGCCT
CCAAGCTCATGCAGAAGGATCTTGGGATCGCAGGCGACGCCGCCAAGGTG
GTCGGAGTACCATTACCGTTGGGCGCCGCGGCGCAACAATTATACACTTT
GATGCAAGTCAATGATCTTGGCAATAAAGATTTTTCCAGCGTTTATCGCT
TTTTGGAGGGAGCGAGAGGGAGCGACAGCAGCAAGAATGAAACTGGTGGC
AAAAGGGAATAA
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Synonyms
Publications