rna2737, rna2737 (mRNA) Nannochloropsis gaditana

Overview
Namerna2737
Unique Namerna2737
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2885
Alignment locationCM002459.1:1081166..1082628 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100008g113.7858.mrna
Orig protein idgnl|cribi|Naga_100008g113.7858
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1081166..1082628 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100008g113gene2618Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2737rna2737-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27966.1cds2729Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2737 ID=rna2737|Name=rna2737|organism=Nannochloropsis gaditana|type=mRNA|length=2885bp
GTGGTGTCAGTGCATCCACTCGCCTTCTGCTGTCTTGAAGTTCTCCCTCC
AGCATTAGGGAGGTCCCAACAAAATACTTATACAATGCGACCAGACGACG
TCGGTACAAATGGATTTCCGTGCGGAGAATTACATGCAGGGGTAGCAGGA
GAGATGCGGCGGATGCTTCGGGATTTGATTCGAAAAAAATTAAGGGCAAC
GAGTGTCTTCTTTGGTGATACGATGAGAGCCTGCCCCGGGCGAAAAAGAT
GACTTGACGTGACGAGTGTCTTGGGAGAGTTGGCGTCGAATGTTTCGGCA
CAATATCCTCGTAGATTACTATTTATTGACAGCTTGCCCCCCTCGTTACC
ATATTTATGGCACAAGTGGGATGAAAACTGTCCATTTTCCTCTCAAATCT
GATGACACCTCCTGACGCAAAGTGCCAACGGGCACTCAATGCTCACATGC
CGCTTTCATCTTATCCATCCATAAAAGCAGCCTCCACGTCTCTAGAATCA
AAGAACCGCTATATTGTGTAGCTTACCACGCAGATATTACGGTGTCGCCA
AGAACTACCGTTTCGGCAGCATGAGCGCACACAGGAGCGTCGGGCGGGGA
CGCGCATTAGCCTCGCATGGACTAGTGTTGCTCGAGCATGCAGTGTTTTT
CGTCGTCGCTTGTAGGACTTTGAACATCATCCGGACAAAAGGATTTGTGG
GCGTGTACAGTGCCACGTTCAAGGCTCTCAGGAACTTGCCAGGGGTGGAG
AGGTTAATCCAGCGGTTGCTTAGAAGGCAGGTGGAGGGAGCAGTACGGCG
CCTGGCCAAGTCCGAGTCTCAGATATGCCGTGAAGCGCATCGACCTGTCC
TCCGGCTTCCTGTCGAAGGGCTTTCCGGGGAGGAAATAATGCAACAGCTC
GAGGCGCTTAAAGCGGCAGAGCGCCGCAGCATGGAGCGAGGGTGCAAGGC
GTTCGGTTACGTGCATTACAATGCCGAAGGGACGCCATTGAGTGCCCATA
CCCAAGTGCTTTTAGAGGCCTTTCGATCCTTCGAAGAAAGCAGTGGAGCA
GACACGACGGGCTACCATGACAAGGTGGTCAACATGGCCTTCACTGCTTT
CCTGAGTGAGTCGACCAACCCCTCCAACCCCGTCTTGATCCCCGTCGTTC
GCAAGTGCGAGAACGAGGTGATCGCCATGACCGCCTCCCTCCTCCACGGG
GACGAGGAGGTGGTGGGTACCCTGACCAGCGGGTCCTCGGAAAGCATCCT
GCTCACGGTCAAGACCTACCGCGACATGGCGCGGGCCACCCTCCCCCACG
TCCGCGAGCCTGAAATCCTGGTGCCCATCACCGCACACCCGGCCTTCGTC
AAGGCGGGTGCCTTGTTTAGCGTCCGAATCGTGATTGTCCCCGTTGGCCC
CGACAAACGCGTCTCGCTTGCCGCCGTGGAGGCCGCCATTTCGCCCAACA
CGATTTTGCTCGTGGCCTCGGCCCCTCAACAGCCCCACGGCGTGGTGGAT
CCCATTCCCGCCCTGGCAGGGATGGCGCAGGAACAAAACGTGCCGTTGCA
CGTGGACGCCGGGCTGGGCGGGTTCATGCTCCCCTTCCTGGAGAAATTGG
GCTACGAGGTCACGCCATGGGACTTCCGATTGGACGGTGTGTCCTCCATC
TCTGTGGACATGCACAAATACGGATACTGCATCAAAGGGGCCTCGGTTTT
GCTCTACCGGAACGCCGACATGCGCGCCCATCAATTCTTCTCCTACACGG
AGTGGCCAGGGGGAGTCTTCGGCTCCCCCTCGCTCACGGGGACCCGGCCA
GGGGGAAACGTGGCGGCGGCCTGGGCGGGCATGATGCAACTGGGGGAGAA
GGGCTACTTGCGGCTGGCGAAAACCGCCATGGAGGTCTGCCATTGCTTGA
AGGAAGGGGTGCGGAGCGTCCGAGGTCTGGGGTTGGTGGCGGAGCCGGAG
ATGACCTGTCTGGCCATACTGAGCCGGGACCCGCGGCTATGCATCCTCCT
GGTCGGCGACGTGATGGAGGAGAAAGGCTGGTGGATGGAGCGGCAGCAGG
CGCCGGCCTCGTTGCATTTGTCCGTGATGCCGCACCACCAAGAGGTGGCG
GACCGTTTCCTCCAGGATTTGAAGGCCTCGGTGGAGGACGTGCGGCGACG
GGGGGCCAGGGCCTTACATTCCCGGGGGAAGGCAGACATTTACGGGATCG
TCGAGAGCATACCCGACCGTTCCCTTCTGTCGAATTTCGTGGTGAAATTG
TACAACGAGACGCACAGGTTACGTCGGGATGACGACTCGGTGCTGATCTC
GCCCTGCATGGTGGAGGAGGGCCTGGGGGCATTGGGGGAGGAGGAGGAGG
AGGAGGAAGAAGAAGAGGAGGAGGAGGAGGAGGAAGGGGAGGCGGAGGCG
CAATGACGGTGCGCGGGTGAACGAGGCAATTAAGGACATGGCCTCTCCAC
CCGCAGAGTCATGCAAGAGCCCTCTTTCCAGGCAGCTAGAACGCTGGGAG
GGCAGGGGGGCAAAGGGGAGGTTGCTTAAGGATGCGAGGGAGGGCAATAG
AGATCGCGGCTGGGTTGTGTAGAAAGGAGTGAGAAGAGGAGGAGGGAGGA
ATGTGCTGGAAGGGGGTGGGGGTAGTCGACGAGTGGAAGGGATGGGAAGG
AGGGAGAGACGGGCCACTGTCGACGTGTTCATTCACCCGGGCCACTGTCG
ACGTGTTCATACACCTATATAGCTATGTGTGCACCGCATTCTCCTGTACC
AATCAATAAGCGAATGCGGCATCGATCAATCTTTACGCAAATGGAGACAC
GGGGGTTCGTGCCTTTGAGCATGAATAATCTTAGCAGCAATAAATTTGGC
TTCCCATCCTCAGGACGAATCTATACCAGTTTTTT
back to top

protein sequence of rna2737

>rna2737-protein ID=rna2737-protein|Name=rna2737|organism=Nannochloropsis gaditana|type=polypeptide|length=238bp
MLEPECRGMVLNEAAASVKSNGSDLDDDVSDRDAPPPPPTPLHTDPRGQR
NKGDILESLLEISLDNEEGDIGGSRSTTSDLPQVKNEPSAARTMLELKDI
ARMRQHVNVLDPVPSRGGFAAMKRGALGGRGIERGGQLTSAVSSALEQAT
ASFGEETGSLAAFERMQRIKGGKGGGKGGVHGIMDSRGSGRKAVLSSKAR
QRRIAGSEKEEAYNDKLNGRMVKHNKRKERMERLRRMY
back to top

mRNA from alignment at CM002459.1:1081166..1082628+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2737 ID=rna2737|Name=rna2737|organism=Nannochloropsis gaditana|type=mRNA|length=1463bp|location=Sequence derived from alignment at CM002459.1:1081166..1082628+ (Nannochloropsis gaditana)
CTTTGCGTCAGGAGGTGTCATCAGATTTGAGAGGAAAATGGACAGTTTTC
ATCCCACTTGTGCCATAAATATGGTAACGAGGGGGGCAAGCTGTCAATAA
ATAGTAATCTACGAGGATATTGTGCCGAAACATTCGACGCCAACTCTCCC
AAGACACTCGTCACGTCAAGTCATCTTTTTCGCCCGGGGCAGGCTCTCAT
CGTATCACCAAAGAAGACACTCGTTGCCCTTAATTTTTTTCGAATCAAAT
CCCGAAGCATCCGCCGCATCTCTCCTGCTACCCCTGCATGTAATTCTCCG
CACGGAAATCCATTTGTACCGACGTCGTCTGGTCGCATTGTATAAGTATT
TTGTTGGGACCTCCCTAATGCTGGAGGGAGAACTTCAAGACAGCAGAAGG
CGAGTGGATGCACTGACACCACTCCGAAAAGACCCAAAACTCACGCCCAA
GGATAATTTGAGACTCACCGTCCAAAATACGAACCATTTTCCCGCGTACC
ATAGGACTCCATCCGCTTCGTTCAAAGCACCGGAATCACTGCCGGTGGTT
TTGCCGACTGGGCGCGGGAGGCCTCATGCTCGAACCGGAATGTCGAGGGA
TGGTCTTGAATGAAGCCGCTGCCTCAGTCAAATCAAATGGGAGCGACTTG
GACGATGATGTGAGTGACCGGGAtgcgcccccaccaccccctaCGCCCTT
GCACACCGACCCTCGTGGGCAGCGAAACAAAGGTGATATCCTGGAGTCCT
TGCTCGAGATAAGCTTGGAtaacgaggagggcgacatCGGTGGGTCCAGG
AGCACGACCTCGGATTTACCCCAGGTTAAAAATGAGCCATCGGCCGCGCG
CACTATGCTTGAACTCAAAGACATTGCTCGGATGCGGCAGCATGTCAACG
TCCTGGATCCTGTTCCGTCTCGAGGCGGGTTTGCAGCAATGAAGCGAGGG
GCATtaggggggagaggaattgaaagaggagggcaatTGACGTCCGCCGT
GTCTTCGGCTTTAGAGCAGGCTACCGCATCCTTTGGAGAAGAGACAGGAT
CCCTCGCTGCTTTTGAGCGTATGCAGCGGATCAAAGGCGGCAAAGGTGGT
GGGAAAGGTGGGGTTCACGGCATCATGGATAGCAGGGGCTCCGGACGCAA
GGCTGTCTTATCCAGCAAGGCTCGTCAGCGAAGAATAGCgggaagcgaga
aggaggaagcctaCAACGACAAATTGAACGGCCGAATGGTAAAGCACAAC
AAGCGGAAGGAGCGCATGGAAAGGCTGAGGCGCATGTATTGAATGAGtcc
gggaaagggaggatccGACCTTGTGAATATATTTGAATTTATTGTGTCGG
GATGCATGGAGGGCAACGAGCATGAATCAAAAACATGATGATTGTGCAGA
CATTGACACACTTGGCGCACGCAATTAAAGCAAAGCAAATTACAGACCTT
GGCAATTCGGTTT
back to top

Coding sequence (CDS) from alignment at CM002459.1:1081166..1082628+

>rna2737 ID=rna2737|Name=rna2737|organism=Nannochloropsis gaditana|type=CDS|length=717bp|location=Sequence derived from alignment at CM002459.1:1081166..1082628+ (Nannochloropsis gaditana)
ATGCTCGAACCGGAATGTCGAGGGATGGTCTTGAATGAAGCCGCTGCCTC
AGTCAAATCAAATGGGAGCGACTTGGACGATGATGTGAGTGACCGGGAtg
cgcccccaccaccccctaCGCCCTTGCACACCGACCCTCGTGGGCAGCGA
AACAAAGGTGATATCCTGGAGTCCTTGCTCGAGATAAGCTTGGAtaacga
ggagggcgacatCGGTGGGTCCAGGAGCACGACCTCGGATTTACCCCAGG
TTAAAAATGAGCCATCGGCCGCGCGCACTATGCTTGAACTCAAAGACATT
GCTCGGATGCGGCAGCATGTCAACGTCCTGGATCCTGTTCCGTCTCGAGG
CGGGTTTGCAGCAATGAAGCGAGGGGCATtaggggggagaggaattgaaa
gaggagggcaatTGACGTCCGCCGTGTCTTCGGCTTTAGAGCAGGCTACC
GCATCCTTTGGAGAAGAGACAGGATCCCTCGCTGCTTTTGAGCGTATGCA
GCGGATCAAAGGCGGCAAAGGTGGTGGGAAAGGTGGGGTTCACGGCATCA
TGGATAGCAGGGGCTCCGGACGCAAGGCTGTCTTATCCAGCAAGGCTCGT
CAGCGAAGAATAGCgggaagcgagaaggaggaagcctaCAACGACAAATT
GAACGGCCGAATGGTAAAGCACAACAAGCGGAAGGAGCGCATGGAAAGGC
TGAGGCGCATGTATTGA
back to top
Synonyms
Publications