rna2735, rna2735 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2735
Unique Name	rna2735
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2724
Alignment location	CM002459.1:1076398..1078606 +

Link to JBrowse

Properties


Property Name	Value
Product	Peptidase S1C
Orig transcript id	gnl\|cribi\|Naga_100008g110.7829.mrna
Orig protein id	gnl\|cribi\|Naga_100008g110.7829
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:1076398..1078606 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100008g110	gene2616	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2735	rna2735-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27937.1	cds2727	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:1076398..1078606+
coding sequence from alignment at CM002459.1:1076398..1078606+

mRNA sequence

>rna2735 ID=rna2735|Name=rna2735|organism=Nannochloropsis gaditana|type=mRNA|length=2724bp
TAAAGCCTTCCACCCTGCACAAAGACCAGGCACGTTTTCCTCGAGACGAA
CGTAAGGATCTGCATGCGGCTGAGGAGGAGTTGCACGCATTCGTCGGGTT
GCGCGCAGCCTGTGCTTTTCCTTAGGCTAGTCTAGGAGGGGCATTTCCTT
TTCCATGATGCGAGACGAGCGTCCCCCCAAATGGGACGCTCGTTGTGCAA
CCATGCCCACCACACTTCATGGGCGAAGAAGAACGAAGGCGAGCGCAGGA
CGGCGTGCACTCTGGCTTGGCGTCCTGTCGTGTGTTTTATCAATTATGGA
CGCGCGGTGCTCATCTTGCCTGCCTTGGCAATGTGAGGAATCCGCCCTCT
CGTGCTCCTCTCGCTCCTCTTCTTGCCCCCGCACCACCACTTCAGCGTCC
TTACTTTGTTCGTCGCGCTTCCTTCCTTCGTTGCCATCCTCTACCTTGGC
GTCTTCCTTGAATTCCTTTGTTCATCGCTGCGAGCATTCGTACTGGGTAG
CCCACGTTCGCGGAGGGATCAAGCGATCCTCCGGACCCGCCACCACCACC
ACCACAGCCACGGCCACGAGCGAAAAAGATGACGGCAGAGAGCTCAGTCC
TACCGAGGTCAGCAACGGAAAAGTACGGGGTCGGACGGACAAGGGTACGC
TGGGGGTGGGGACACAGACCGCGAGCCCTCAATCCACGCGCAGGGCTGTG
TCTCCCTCCGCACCATCAGGGCCGGCGGCAGATGGCGACACGGCCAAAGA
TGAGGTTGATGAGGGTACGCGTGGGAAGGAGGGGGCAGATGTGGCTGAAG
AGAAAGGGGGAGCCACAGACGCGGCCTCCGACAGGGAGGTGGGGAGAGTG
AGGGGCCTGGGGCCGGGAAAGAAGGGTGACTCGGCGCGCTCTGCCCAGAC
GAGGGGGGACGCATTGTCGGGAGGGAAAGGGAGACAAACGGCTGGAGGCA
AGCCAAATCGGAGAACTCGGAAGGGAGGGGTAAGGGAAGCAGGCGGGTCC
GAGGCCCGGGAGGCAGGGGCATCTCTTCCGGACACGGAGGCCACAAAGAT
GGCCGCATCCCTCCCTGCTCCTCGCCCTCCCTCCCGCCCTCCTCGCCGGC
GAGGGCCCCAACCGCCTCCCCCGGCGCCGGAGCCGCCCCTCTCTCCATTG
GAGGAGAGCCTGCTTCAGACCGCAGCCGGGCGGATGACGCTGGCCATGGG
CCTCGTGCTTCGGGAGCTCGCCCAAGTGTACGTCCTCCAACTCTACCTCC
TCGTGGCCGTGGTCATGCGGGTCCTGCTTCGATATACGACTCTCCTGCAT
CGACTGGGGCTCGTGGGAGACGTGCGCCGCCCGGAAAGGGAAAGGCGGGG
GCGGCCGGGAGGGAGGGAGAGCGGGGTGGTGATGGATCTGGAGGATGAAG
AGGACGAGGCGGAAATTCTGTCGGCCGAAAATTTGATGCCAGCGCCTGTA
GAGCGGTTCAAGCGTGTGTCCGCGGCGTTTTTAATGCGGCACGGGCTAAT
CGACGCGGAGGCAGAGAGGGACACGACAGGAGGCTGGGGGGAGGGAGGGA
GGGAGGGAGGGAAGGGAGAGGGGGGTCCGTCCTTCACCTTTAGCTTCACG
CCCAGCGATATGGAAGCGGGGAAGCGTGGATCAACGACGTTGAAGAGTCC
AGCCATGCTGCGGGGGAACAGGGGGCTGGGCGGAGGGTTGGCGGCCCTGA
AGAAAGGAGGGCGGGAAGGAGGGAGGAAGAAGACAAGGGGAAGGGAGGGA
AGGACGGCGACGTCGCCTTCCGCCTGGAAGCAGCTGGTCCCGGACGTGGC
AGAGGGCGCGCAAGTTCTGTCCAAGTCCTGGGCGAGTCTGACCAAGGGGC
TACGGAACGGGATATTGGGGTCCGAGAAGCAGGGTAGGATCAAGCTTCCC
CCCCGGCGCCGGGTCCTCTTTGAAGACGACGACGACGACGAGGACGAGGA
GGGGGACGATGGCGGAGGGGAGGCATGGCCCGACGGGCGTGGAAGCGTCA
GGGACCGGACTGGTTTGGCGCCGCGGACGGATCGGATCGGGCTTCCCCCT
CGAGCCCGGCGTTTGTCGCCCCCCGGGGAGGAGGCAGGGCAACAGGCACA
CCGGCTGCCGCGGCAGACAGAGGCAGGTCAACGCACCGCATCGGGCCGCA
CGTCCGAGGTGAGGGCCGAAGGTCTGCCCGCCCCCGCACCGGAGGACGAG
GACGGGGACGAGGACTGGTTGGCCTCTTTGCAGCGCCGTGGGGAAGCAGA
GAAGAAAAAATGGCTCCTCTCTTCAGACTCTGTCGCGTCGCGAAGGCGAA
GAGGCACGCCCAGGGACGACGTTGTCGAGGACGGTCCCCTCCGCAAAAGG
AAAAACGGAATCTCGGTCAGAAAGCGTGCTCCTGTAGACTCCTCGTCCAC
CGTCTCTTCGTCCCTGAATCCCTTTGCGTCCTCGACTTCTTCCTTATCCT
TAAAAGCCGCCCCACGTCCCTCTTCCAGAGCACCACCGGAAAGATTTGTT
AGGGGAATCGAAGACATGGCAGGTGGAAAATATGCAGGCGCAGGAGATGC
ACGAGCACAGGCAAGAGAAAAAGTCGACGAACTCCGACGGAAAACGGCTA
TGTCGTGGTCTGTACGGAAAAATATGGCGGACCGGCAGAGAAAGCAAGGC
CGAGACGAGTGAAAAGAAAGAAGTCCTGCGATACGCGAATCGATAAAAGT
AGCAAATAATGTCATGGTTTTCGG

protein sequence of rna2735

>rna2735-protein ID=rna2735-protein|Name=rna2735|organism=Nannochloropsis gaditana|type=polypeptide|length=418bp
MRTPLLAPTLRYVGVNRLHGENLILRGCLHAPFPHYFAELPACTSYLLRA
ITCHALFSPVSYPCSAHFFFANHLFPSCSPSVCRVPQPLPPKGSAHGNGL
GRYFVADAVEAAAPAVANITVNIRFHAGRWTPTYATQSGSGFVISEDGLV
VTNAHVIASSMGGDEPVMITLTDGRKFSGKVHSIDARTDVALLQADTQGA
KLPVARIGQSSNLRPGEWVVALGSPQGLANTVTVGIVSTVARLGSELGLM
HTRAEYIQTDAAINAGNSGGPLVNLDGEVVGINSMKLEYSDGIGFAIPID
SAFQVVQQLIKYKRVRRPYVGLSFRLVNVEGAEGERAGEKELGMLVLEVK
AGSPAEKAGLQEGDVVIEIDGSRVKGLGDVTEKIGLEPEKTFTVKVMRHG
QRYPLMMSVTSVADERKR

mRNA from alignment at CM002459.1:1076398..1078606+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2735 ID=rna2735|Name=rna2735|organism=Nannochloropsis gaditana|type=mRNA|length=2209bp|location=Sequence derived from alignment at CM002459.1:1076398..1078606+ (Nannochloropsis gaditana)
tcccccctttcctccctgtgaCCAGCACGCGTTCACACAGGGAAATCTGT
ATTGGTGCCCTTCACAGGGGTCATGGCCTTGCGCCGAGAAGGTCAAAAAA
TTCTCTTCAGGTCATTGGGCGTGCGAATGGGTACAGGAAGGCTTGCGTGC
TCGTGGTCGTCACGCAACAGGTAACTAGggaggcctggaaggagggaact
gGAACATAGgattccccttccccgaGCATTTCTGGGCAAGTTGGTGCGAG
CGCGCCTCATTTCGCTCGTTCTTTTCTGGCTATGTCTGTTGTCCTGCGTG
AATTGATGCAGACTGACTGCTGGAGGATCGCACGCGCCAAGGTCCCCGAC
GGCCCTCGCGACTCCCCCCTTgctgcctctttcctccgccgccattCGGA
CAGTTCCCAATGCCAAATCGAAGGGCGTTGCCGCGGCCTTCTTGCTAGGA
TCGATGTTGCTTGGACACGCGTATGAGGACTCCACTGCTCGCGCCGACGC
TAAGGTACGTGGGCGTCAACCGGCTCCATGGTGAGAATCTTATCTTGCGG
GgctgcctccacgccccctttcctcatTATTTCGCCGAACTGCCAGCGTG
CACTTCGTACCTACTGCGCGCTATAACATGCCAtgcccttttctctcccg
ttTCATACCCCTGCTCTGCCCATTTCTTCTTTGCTAATCACCTGTTTCCT
TCGTGCTCGCCCTCTGTATGTCGGGTTcctcagcccctccctcccaaggg
CTCCGCCCACGGAAATGGCCTCGGCCGCTATTTCGTCGCCGACGCAGTCG
AGGCCGCCGCACCTGCTGTTGCCAATATCACGGTGAACATTCGTTTCCAC
GCGGGGCGGTGGACCCCAACTTATGCCACGCAATCGGGATCCGGCTTTGT
CATCAGCGAAGACGGCTTGGTCGTCACGAATGCGCACGTGATAGCCTCCA
GCATGGGGGGTGATGAACCCGTCATGATCACCCTCACAGACGGACGGAAA
TTTTCGGGGAAAGTGAGTTTTGGCCTTCCCCGATCCCGCGCGTTGGGTGG
TGGCCACCCCTCCGTGTCCTGGCAGCCTCGGTCTTATGCCCCCTGatccc
cgtccccctcccttgtctccccgCGACCCCCCGCCCAGGTCCACAGCATC
GACGCCCGAACGGACGTGGCCTTGCTGCAAGCCGACACCCAGGGCGCCAA
GCTGCCAGTGGCTCGGATCGGACAGAGCAGCAACCTGCGGCCGGGGGAAT
GGGTGGTGGCTCTAGGCAGCCCGCAGGGCCTGGCGAACACCGTGACGGTC
GGGATCGTCAGCACGGTGGCCCGCTTGGGCTCGGAGCTGGGGCTCATGCA
CACACGGGCGGAGTACATACAGACAGACGCGGCCATCAATGCGGGAAATT
CCGGTGCGGGCTTTGTTTGGGACGACCTTTTTTTCTGCATGTGCCTCAgt
ttgttttcttttcttttttttgtttttttggTAATTTTTCGATCGATTTT
GTCGTGTTTGGCGTGGGAACACTATTGCAGGTGCTGACCATGTCAGTCCA
TTGTCCCTTTTCTGCCTCCGCACAGGGGGGCCTTTGGTAAAcctggacgg
ggaggtggtggggatcAACAGCATGAAATTGGAGTACTCCGACGGCATCG
GCTTTGCCATTCCCATCGACTCCGCCTTCCAAGTCGTCCAGCAGCTGATC
AAATACAAGCGGGTCCGACGGCCCTACGTGGGCCTGTCCTTCCGCCTCGT
GAACGTGgaaggcgccgagggagagcgggccgGGGAAAAAGAATTGGGTa
tgctggtgctggaggtcAAGGCCGGGAGCCCCGCGGAGAAAGCCGGCCTT
CAGGAAGGAGACGTGGTGATTGAAATCGACGGCTCGCGGGTGAAGGGCCT
GGGGGATGTCACGGAGAAGATCGGATTGGAACCGGAGAAGACCTTCACGG
TGAAGGTTATGAGGCATGGGCAGCGATATCCCTTGATGATGAGCGTGACG
AGCGTGGCCGATgaaaggaagagatgaagccgggaaaggggaagtaATAG
AAGCTAGGTTGCGCAGTAGGACGgcatgggaaaaaaaaaactgGTATAGA
TTCGTCCTGAGGATGGGAAGCCAAATTTATTGCTGCTAAGATTATTCATG
CTCAAAGGCACGAACCCCCGTGTCTCCATTTGCGTAAAGATTGATCGATG
CCGCATTCG

Coding sequence (CDS) from alignment at CM002459.1:1076398..1078606+

>rna2735 ID=rna2735|Name=rna2735|organism=Nannochloropsis gaditana|type=CDS|length=3771bp|location=Sequence derived from alignment at CM002459.1:1076398..1078606+ (Nannochloropsis gaditana)
ATGAGGACTCCACTGCTCGCGCCGACGCTAAGGTACGTGGGCGTCAACCG
GCTCCATGGTGAGAATCTTATCTTGCGGGgctgcctccacgccccctttc
ctcatTATTTCGCCGAACTGCCAGCGTGCACTTCGTACCTACTGCGCGCT
ATAACATGCCAtgcccttttctctcccgttTCATACCCCTGCTCTGCCCA
TTTCTTCTTTGCTAATCACCTGTTTCCTTCGTGCTCGCCCTCTGTATGTC
GGGTTcctcagcccctccctcccaagggCTCCGCCCACGGAAATGGCCTC
GGCCGCTATTTCGTCGCCGACGCAGTCGAGGCCGCCGCACCTGCTGTTGC
CAATATCACGGTGAACATTCGTTTCCACGCGGGGCGGTGGACCCCAACTT
ATGCCACGCAATCGGGATCCGGCTTTGTCATCAGCGAAGACGGCTTGGTC
GTCACGAATGCGCACGTGATAGCCTCCAGCATGGGGGGTGATGAACCCGT
CATGATCACCCTCACAGACGGACGGAAATTTTCGGGGAAAGTCCACAGCA
TCGACGCCCGAACGGACGTGGCCTTGCTGCAAGCCGACACCCAGGGCGCC
AAGCTGCCAGTGGCTCGGATCGGACAGAGCAGCAACCTGCGGCCGGGGGA
ATGGGTGGTGGCTCTAGGCAGCCCGCAGGGCCTGGCGAACACCGTGACGG
TCGGGATCGTCAGCACGGTGGCCCGCTTGGGCTCGGAGCTGGGGCTCATG
CACACACGGGCGGAGTACATACAGACAGACGCGGCCATCAATGCGGGAAA
TTCCGGGGGGCCTTTGGTAAAcctggacggggaggtggtggggatcAACA
GCATGAAATTGGAGTACTCCGACGGCATCGGCTTTGCCATTCCCATCGAC
TCCGCCTTCCAAGTCGTCCAGCAGCTGATCAAATACAAGCGGGTCCGACG
GCCCTACGTGGGCCTGTCCTTCCGCCTCGTGAACGTGgaaggcgccgagg
gagagcgggccgGGGAAAAAGAATTGGGTatgctggtgctggaggtcAAG
GCCGGGAGCCCCGCGGAGAAAGCCGGCCTTCAGGAAGGAGACGTGGTGAT
TGAAATCGACGGCTCGCGGGTGAAGGGCCTGGGGGATGTCACGGAGAAGA
TCGGATTGGAACCGGAGAAGACCTTCACGGTGAAGGTTATGAGGCATGGG
CAGCGATATCCCTTGATGATGAGCGTGACGAGCGTGGCCGATgaaaggaa
gagatgaATGAGGACTCCACTGCTCGCGCCGACGCTAAGGTACGTGGGCG
TCAACCGGCTCCATGGTGAGAATCTTATCTTGCGGGgctgcctccacgcc
ccctttcctcatTATTTCGCCGAACTGCCAGCGTGCACTTCGTACCTACT
GCGCGCTATAACATGCCAtgcccttttctctcccgttTCATACCCCTGCT
CTGCCCATTTCTTCTTTGCTAATCACCTGTTTCCTTCGTGCTCGCCCTCT
GTATGTCGGGTTcctcagcccctccctcccaagggCTCCGCCCACGGAAA
TGGCCTCGGCCGCTATTTCGTCGCCGACGCAGTCGAGGCCGCCGCACCTG
CTGTTGCCAATATCACGGTGAACATTCGTTTCCACGCGGGGCGGTGGACC
CCAACTTATGCCACGCAATCGGGATCCGGCTTTGTCATCAGCGAAGACGG
CTTGGTCGTCACGAATGCGCACGTGATAGCCTCCAGCATGGGGGGTGATG
AACCCGTCATGATCACCCTCACAGACGGACGGAAATTTTCGGGGAAAGTC
CACAGCATCGACGCCCGAACGGACGTGGCCTTGCTGCAAGCCGACACCCA
GGGCGCCAAGCTGCCAGTGGCTCGGATCGGACAGAGCAGCAACCTGCGGC
CGGGGGAATGGGTGGTGGCTCTAGGCAGCCCGCAGGGCCTGGCGAACACC
GTGACGGTCGGGATCGTCAGCACGGTGGCCCGCTTGGGCTCGGAGCTGGG
GCTCATGCACACACGGGCGGAGTACATACAGACAGACGCGGCCATCAATG
CGGGAAATTCCGGGGGGCCTTTGGTAAAcctggacggggaggtggtgggg
atcAACAGCATGAAATTGGAGTACTCCGACGGCATCGGCTTTGCCATTCC
CATCGACTCCGCCTTCCAAGTCGTCCAGCAGCTGATCAAATACAAGCGGG
TCCGACGGCCCTACGTGGGCCTGTCCTTCCGCCTCGTGAACGTGgaaggc
gccgagggagagcgggccgGGGAAAAAGAATTGGGTatgctggtgctgga
ggtcAAGGCCGGGAGCCCCGCGGAGAAAGCCGGCCTTCAGGAAGGAGACG
TGGTGATTGAAATCGACGGCTCGCGGGTGAAGGGCCTGGGGGATGTCACG
GAGAAGATCGGATTGGAACCGGAGAAGACCTTCACGGTGAAGGTTATGAG
GCATGGGCAGCGATATCCCTTGATGATGAGCGTGACGAGCGTGGCCGATg
aaaggaagagatgaATGAGGACTCCACTGCTCGCGCCGACGCTAAGGTAC
GTGGGCGTCAACCGGCTCCATGGTGAGAATCTTATCTTGCGGGgctgcct
ccacgccccctttcctcatTATTTCGCCGAACTGCCAGCGTGCACTTCGT
ACCTACTGCGCGCTATAACATGCCAtgcccttttctctcccgttTCATAC
CCCTGCTCTGCCCATTTCTTCTTTGCTAATCACCTGTTTCCTTCGTGCTC
GCCCTCTGTATGTCGGGTTcctcagcccctccctcccaagggCTCCGCCC
ACGGAAATGGCCTCGGCCGCTATTTCGTCGCCGACGCAGTCGAGGCCGCC
GCACCTGCTGTTGCCAATATCACGGTGAACATTCGTTTCCACGCGGGGCG
GTGGACCCCAACTTATGCCACGCAATCGGGATCCGGCTTTGTCATCAGCG
AAGACGGCTTGGTCGTCACGAATGCGCACGTGATAGCCTCCAGCATGGGG
GGTGATGAACCCGTCATGATCACCCTCACAGACGGACGGAAATTTTCGGG
GAAAGTCCACAGCATCGACGCCCGAACGGACGTGGCCTTGCTGCAAGCCG
ACACCCAGGGCGCCAAGCTGCCAGTGGCTCGGATCGGACAGAGCAGCAAC
CTGCGGCCGGGGGAATGGGTGGTGGCTCTAGGCAGCCCGCAGGGCCTGGC
GAACACCGTGACGGTCGGGATCGTCAGCACGGTGGCCCGCTTGGGCTCGG
AGCTGGGGCTCATGCACACACGGGCGGAGTACATACAGACAGACGCGGCC
ATCAATGCGGGAAATTCCGGGGGGCCTTTGGTAAAcctggacggggaggt
ggtggggatcAACAGCATGAAATTGGAGTACTCCGACGGCATCGGCTTTG
CCATTCCCATCGACTCCGCCTTCCAAGTCGTCCAGCAGCTGATCAAATAC
AAGCGGGTCCGACGGCCCTACGTGGGCCTGTCCTTCCGCCTCGTGAACGT
GgaaggcgccgagggagagcgggccgGGGAAAAAGAATTGGGTatgctgg
tgctggaggtcAAGGCCGGGAGCCCCGCGGAGAAAGCCGGCCTTCAGGAA
GGAGACGTGGTGATTGAAATCGACGGCTCGCGGGTGAAGGGCCTGGGGGA
TGTCACGGAGAAGATCGGATTGGAACCGGAGAAGACCTTCACGGTGAAGG
TTATGAGGCATGGGCAGCGATATCCCTTGATGATGAGCGTGACGAGCGTG
GCCGATgaaaggaagagatga

Synonyms

Publications