rna272, rna272 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna272
Unique Name	rna272
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	648
Alignment location	CM002455.1:691903..694296 +

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Properties


Property Name	Value
Product	lariat debranching enzyme
Orig transcript id	gnl\|cribi\|Naga_100026g44.10654.mrna
Orig protein id	gnl\|cribi\|Naga_100026g44.10654
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:691903..694296 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100026g44	gene261	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna272	rna272-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30400.1	cds272	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:691903..694296+
coding sequence from alignment at CM002455.1:691903..694296+

mRNA sequence

>rna272 ID=rna272|Name=rna272|organism=Nannochloropsis gaditana|type=mRNA|length=648bp
TATATGGAGCCGCGACGCGGGACATGATGGCATCGAATGCACGCGTTGAC
TATTGCGCACGCCATGTTGACACCTTTTCAATGCCTTCCATGGACACAGT
AACTCGGGAAGGGCGAACGGCTTGAGCCACGAAAAGTGTTGGGTAAGAGA
GCAGCAGTTGACGCGAGGATTGAGTGGTAATTTGCTTCGATCGTAAACCC
CACAAAGCCATTAAATAGTATGCCCTTACTTGCCGGAATTAATACGGGCT
TCCAGCGTCTCTCCAAATACTTGTCTAAAGCGGCTCGTAAGCGCCTCCCC
CTGAGCCCGAAGCGAACGGGGAAAGGCTTTTACAAAGGCAACAAGTGTGC
ATCCACGGGGCGCATAAACAGCATTGGTCGGTTTCGCATGGACGAGAGAA
AGAGAGTAGAACTGAACGTCCCGGATTTGACAGGCTTCAAGCTCAAGCCT
TATGTGTCACCAACTGTTTTTAAGTATCCTGTCGATGCTGGAATTATCTG
GCCACCAACCAAAAAGACGACGAATTTTTTTGGCGTATGATAAATGTGAA
AAACGTAATATTTGGAAAAGATCAAAGTCAAACAGAGCTGTGTGATGTTT
GAGCGTTGCCAGGAGCGACTCCAAAGGATTTTGCCTTGATACTTTGTA

protein sequence of rna272

>rna272-protein ID=rna272-protein|Name=rna272|organism=Nannochloropsis gaditana|type=polypeptide|length=539bp
MHKNLRIVVEGCCHGELDQIYASIALIEQESGQNVDLLICCGDFQAVRNK
EDLKSMNVPSKYLTMASFHRYYSGEKVAPVLTIFIGGNHEASNHLQELYY
GGWVAPNIYYLGCSGVVSVGGVRIAGISGIYNGRDYHRGHFEAPPYSPST
LRSIYHVREYEVFKLAQLASGSGARGDSAHVDVMLSHDWPRGIYHHGDMG
QLLRTKPYFRKECETNTLGSQAAELLLNLLQPSYWFAGHLHCKFAAVVRH
SSSTSQMSTPANVTKFLALDKCLPNRDFLQLVEIPRPPDCWEQPVRLEYD
LEWLAILRSTHSLLSRAEREVVLPRESRRVAPDDLEWVRARLAAACKRRG
DDPSQALEIQPDAFVKTAPVHEPSSTDGLHGDGCLRGSPQTDALLKLLEL
GHRVTVPYTPCPPQAGAHGSQRSPSRRLENVQPGQRSSGEEEQRGTSLFF
LDRGEDRGSSLPDPDSIDLDEVESAECEDAVAQEYDRQEIVKPESEGECG
KDVIVFKGDHSPAHAAPGSQPSPRLHPSRPKLILPPPSL

mRNA from alignment at CM002455.1:691903..694296+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna272 ID=rna272|Name=rna272|organism=Nannochloropsis gaditana|type=mRNA|length=2394bp|location=Sequence derived from alignment at CM002455.1:691903..694296+ (Nannochloropsis gaditana)
ATTGCCAGCATATAGTGAAGCGCAAGTAGAAGCCCATAGGCACATGTACG
GAAAGAGGTGCTGATTCGAAACAAACTGCCACCCAGAAGGCTAACAAACC
CACAAAAGATAACTTGAAAAGCCCGGATACATGTCAGCCAGCCTAATTAA
GGGAGTCGTTGTTAACTTAGATGGCCCATATGCTTGGCGTACGAGCTTCA
CGACCCGAAACATCTAGCAACCACCGAATCGACTATTGAAAAAGCAAACT
TCGGTCTTGTTGGGTAAACGTCAAACCGCATTGATCTGGATACTTAATGG
TAGTGAAGAGGGTCTTTTAATAGCTAGGTTCACTGAAGATGATACGTCAC
ATAGCGGTGCAGGAGGTAGCAGGGTTCACGCGATCGGAAGGACGACGTGC
ACTGCACGGGCATATTTTGCTTTCATTTCTTATCCTCTTCTGGATCAAAT
GTCAGGATACAGGAGCTCGCCGCGGAGAGACATTTGATTTAAGACGGCTG
TCAGGAGGTGCAGGGATCGGTAGCATCTACAACACGTCTTagccttgctc
tccctcgcACAACCAGAAAATCATGCATAAAAACCTGCGCATTGTTGTGG
AAGGTTGCTGTCATGGGGAATTAGACCAAATATACGCATCGATTGCGCTA
ATTGAGCAGGAATCGGGTCAAAACGTAGATTTGCTTATTTGTTGCGGGGA
CTTCCAAGCTGTGCGGAACAAAGAGGATCTAAAATCCATGAATGTGCCCA
GCAAGTACCTGACCATGGCGTCGTTCCATCGGTATTACAGTGGAGAAAAG
GTTGCACCAGTTCTTACGATTTTCATAGGAGGAAACCACGAAGCATCCAA
TCACTTGCAAGAATTGTATTACGGGGGGTGGGTGGCCCCTAACATCTACT
ACTTAGGGTGCTCTGGAGTCGTTTCAGTTGGTGGAGTGCGCATCGCAGGC
ATATCCGGGATCTACAACGGACGAGACTACCACCGCGGTCACTTTGAAGC
TCCGCCGTACTCTCCCAGCACGCTGCGCTCGATTTACCACGTGCGGGAAT
ACGAGGTTTTCAAGCTTGCCCAGCTAGCTTCGGGAAGCGGGGCACGAGGC
GACTCCGCTCACGTGGACGTAATGCTATCGCATGACTGGCCGCGCGGCAT
CTATCACCACGGTGATATGGGGCAGCTTCTGCGGACGAAACCTTATTTTC
GAAAAGAATGTGAGACAAACACGTTGGGCAGCCAAGCGGCGGAGCTCCTC
CTAAACCTCTTACAACCGAGTTACTGGTTTGCAGGTCACCTTCACTGTAA
GTTCGCAGCCGTTGTACGTCACTCCAGCTCAACCTCCCAGATGTCCACGC
CAGCAAATGTGACGAAGTTCTTGGCGCTGGACAAGTGTTTGCCCAACCGG
GACTTCTTGCAGCTGGTGGAgatcccccgcccgcctgaTTGTTGGGAGCA
GCCCGTACGTCTGGAGTATGACCTAGAGTGGTTGGCCATCCTGCGGTCAA
CGCATTCGCTTCTGAGTCgcgcagagagggaggtggtccTCCCGCGAGAG
TCGAGGCGGGTCGCTCCCGATGATCTCGAGTGGTAAGGCGCGGGCTCGGC
AGTGGGCGAGACGCTGCTCTCGGCATGGGCGCCTTCCATTCTTAATAGCG
AACTTGTGCTTATCTAGGCTTTTCGTGTTTTTCAAACAATACTATATACT
ATACTGAGGTTAAAATTCCCCTCATACGAATTTCCTGTCGCAGGGTGAGG
GCCCGcctggccgccgcctgcaaGCGCCGAGGAGAcgatccctcccaggc
cctggagATCCAACCGGACGCTTTTGTCAAGACAGCGCCCGTTCACGAGC
CCTCTTCCACGGATGGACTCCACGGCGATGGTTGTCTTCGGGGAAGCCCG
CAAACTGACGCGCTCCTCAAGCTGTTGGAGCTGGGTCACCGTGTCACAGT
GCCCTACACGCCCTGCCCTCCACAGGCCGGCGCCCACGGGTCGCAGCGAT
CGCCGAGTCGTCGCCTGGAGAACGTCCAGCCAGGACAGAGAAGTAGtggc
gaggaagagcagaGGGGCACCAGCCTTTTCTTTCTAGATAGGGGGGAAGA
CCGAGGCAGCAGTCTCCCAGACCCCGACTCGATTGACCTAGATGAGGTGG
AGAGCGCGGAGTGCGAGGATGCGGTAGCGCAGGAATACGACCGTCAAGAG
ATTGTCAAGCCTGAATCGGAGGGAGAATGTGGGAAGGATGTCATCGTTTT
CAAGGGTGACCATTCACCAGCGCATGCGGCGCCCGGCTCACAGCCGTCTC
CTCGATTGCACCCGTCAAGGCCGAAGCTGattctccctccgccttcgctA
TAAGATTAAATTTAAGCAAAGTACCAATTCATGACAAGGACTGC

Coding sequence (CDS) from alignment at CM002455.1:691903..694296+

>rna272 ID=rna272|Name=rna272|organism=Nannochloropsis gaditana|type=CDS|length=3240bp|location=Sequence derived from alignment at CM002455.1:691903..694296+ (Nannochloropsis gaditana)
ATGCATAAAAACCTGCGCATTGTTGTGGAAGGTTGCTGTCATGGGGAATT
AGACCAAATATACGCATCGATTGCGCTAATTGAGCAGGAATCGGGTCAAA
ACGTAGATTTGCTTATTTGTTGCGGGGACTTCCAAGCTGTGCGGAACAAA
GAGGATCTAAAATCCATGAATGTGCCCAGCAAGTACCTGACCATGGCGTC
GTTCCATCGGTATTACAGTGGAGAAAAGGTTGCACCAGTTCTTACGATTT
TCATAGGAGGAAACCACGAAGCATCCAATCACTTGCAAGAATTGTATTAC
GGGGGGTGGGTGGCCCCTAACATCTACTACTTAGGGTGCTCTGGAGTCGT
TTCAGTTGGTGGAGTGCGCATCGCAGGCATATCCGGGATCTACAACGGAC
GAGACTACCACCGCGGTCACTTTGAAGCTCCGCCGTACTCTCCCAGCACG
CTGCGCTCGATTTACCACGTGCGGGAATACGAGGTTTTCAAGCTTGCCCA
GCTAGCTTCGGGAAGCGGGGCACGAGGCGACTCCGCTCACGTGGACGTAA
TGCTATCGCATGACTGGCCGCGCGGCATCTATCACCACGGTGATATGGGG
CAGCTTCTGCGGACGAAACCTTATTTTCGAAAAGAATGTGAGACAAACAC
GTTGGGCAGCCAAGCGGCGGAGCTCCTCCTAAACCTCTTACAACCGAGTT
ACTGGTTTGCAGGTCACCTTCACTGTAAGTTCGCAGCCGTTGTACGTCAC
TCCAGCTCAACCTCCCAGATGTCCACGCCAGCAAATGTGACGAAGTTCTT
GGCGCTGGACAAGTGTTTGCCCAACCGGGACTTCTTGCAGCTGGTGGAga
tcccccgcccgcctgaTTGTTGGGAGCAGCCCGTACGTCTGGAGTATGAC
CTAGAGTGGTTGGCCATCCTGCGGTCAACGCATTCGCTTCTGAGTCgcgc
agagagggaggtggtccTCCCGCGAGAGTCGAGGCGGGTCGCTCCCGATG
ATCTCGAGTGGGTGAGGGCCCGcctggccgccgcctgcaaGCGCCGAGGA
GAcgatccctcccaggccctggagATCCAACCGGACGCTTTTGTCAAGAC
AGCGCCCGTTCACGAGCCCTCTTCCACGGATGGACTCCACGGCGATGGTT
GTCTTCGGGGAAGCCCGCAAACTGACGCGCTCCTCAAGCTGTTGGAGCTG
GGTCACCGTGTCACAGTGCCCTACACGCCCTGCCCTCCACAGGCCGGCGC
CCACGGGTCGCAGCGATCGCCGAGTCGTCGCCTGGAGAACGTCCAGCCAG
GACAGAGAAGTAGtggcgaggaagagcagaGGGGCACCAGCCTTTTCTTT
CTAGATAGGGGGGAAGACCGAGGCAGCAGTCTCCCAGACCCCGACTCGAT
TGACCTAGATGAGGTGGAGAGCGCGGAGTGCGAGGATGCGGTAGCGCAGG
AATACGACCGTCAAGAGATTGTCAAGCCTGAATCGGAGGGAGAATGTGGG
AAGGATGTCATCGTTTTCAAGGGTGACCATTCACCAGCGCATGCGGCGCC
CGGCTCACAGCCGTCTCCTCGATTGCACCCGTCAAGGCCGAAGCTGattc
tccctccgccttcgctATAAATGCATAAAAACCTGCGCATTGTTGTGGAA
GGTTGCTGTCATGGGGAATTAGACCAAATATACGCATCGATTGCGCTAAT
TGAGCAGGAATCGGGTCAAAACGTAGATTTGCTTATTTGTTGCGGGGACT
TCCAAGCTGTGCGGAACAAAGAGGATCTAAAATCCATGAATGTGCCCAGC
AAGTACCTGACCATGGCGTCGTTCCATCGGTATTACAGTGGAGAAAAGGT
TGCACCAGTTCTTACGATTTTCATAGGAGGAAACCACGAAGCATCCAATC
ACTTGCAAGAATTGTATTACGGGGGGTGGGTGGCCCCTAACATCTACTAC
TTAGGGTGCTCTGGAGTCGTTTCAGTTGGTGGAGTGCGCATCGCAGGCAT
ATCCGGGATCTACAACGGACGAGACTACCACCGCGGTCACTTTGAAGCTC
CGCCGTACTCTCCCAGCACGCTGCGCTCGATTTACCACGTGCGGGAATAC
GAGGTTTTCAAGCTTGCCCAGCTAGCTTCGGGAAGCGGGGCACGAGGCGA
CTCCGCTCACGTGGACGTAATGCTATCGCATGACTGGCCGCGCGGCATCT
ATCACCACGGTGATATGGGGCAGCTTCTGCGGACGAAACCTTATTTTCGA
AAAGAATGTGAGACAAACACGTTGGGCAGCCAAGCGGCGGAGCTCCTCCT
AAACCTCTTACAACCGAGTTACTGGTTTGCAGGTCACCTTCACTGTAAGT
TCGCAGCCGTTGTACGTCACTCCAGCTCAACCTCCCAGATGTCCACGCCA
GCAAATGTGACGAAGTTCTTGGCGCTGGACAAGTGTTTGCCCAACCGGGA
CTTCTTGCAGCTGGTGGAgatcccccgcccgcctgaTTGTTGGGAGCAGC
CCGTACGTCTGGAGTATGACCTAGAGTGGTTGGCCATCCTGCGGTCAACG
CATTCGCTTCTGAGTCgcgcagagagggaggtggtccTCCCGCGAGAGTC
GAGGCGGGTCGCTCCCGATGATCTCGAGTGGGTGAGGGCCCGcctggccg
ccgcctgcaaGCGCCGAGGAGAcgatccctcccaggccctggagATCCAA
CCGGACGCTTTTGTCAAGACAGCGCCCGTTCACGAGCCCTCTTCCACGGA
TGGACTCCACGGCGATGGTTGTCTTCGGGGAAGCCCGCAAACTGACGCGC
TCCTCAAGCTGTTGGAGCTGGGTCACCGTGTCACAGTGCCCTACACGCCC
TGCCCTCCACAGGCCGGCGCCCACGGGTCGCAGCGATCGCCGAGTCGTCG
CCTGGAGAACGTCCAGCCAGGACAGAGAAGTAGtggcgaggaagagcaga
GGGGCACCAGCCTTTTCTTTCTAGATAGGGGGGAAGACCGAGGCAGCAGT
CTCCCAGACCCCGACTCGATTGACCTAGATGAGGTGGAGAGCGCGGAGTG
CGAGGATGCGGTAGCGCAGGAATACGACCGTCAAGAGATTGTCAAGCCTG
AATCGGAGGGAGAATGTGGGAAGGATGTCATCGTTTTCAAGGGTGACCAT
TCACCAGCGCATGCGGCGCCCGGCTCACAGCCGTCTCCTCGATTGCACCC
GTCAAGGCCGAAGCTGattctccctccgccttcgctATAA

Synonyms

Publications