rna2717, rna2717 (mRNA) Nannochloropsis gaditana

Overview
Namerna2717
Unique Namerna2717
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length213
Alignment locationCM002459.1:1035528..1036012 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100008g88.7861.mrna
Orig protein idgnl|cribi|Naga_100008g88.7861
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1035528..1036012 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100008g88gene2598Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2717rna2717-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27969.1cds2709Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2717 ID=rna2717|Name=rna2717|organism=Nannochloropsis gaditana|type=mRNA|length=213bp
ATGACGGATGGTACTGAGAAGACTGGTGGAAAGAGACATGAGAGGAGCGA
GACGACGAGAAGAGAGCGAATAGTGTGGAAAATAGCTGTGCTTGTAACTT
GTTCCACTTGTGGTGTAAGCGTATGCCTTGGCCTCCGCATTTTTGAAGAG
GATAATGCCTGTCGAGGCACTTATATCCCTAACCAGCCCATCAATTTCGG
TCTCTCTGAATGA
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protein sequence of rna2717

>rna2717-protein ID=rna2717-protein|Name=rna2717|organism=Nannochloropsis gaditana|type=polypeptide|length=113bp
MRAEVVRRRVQPGVNHIGSQKNNWSHPQAAVTDGLLGQGGSLSLDPPASF
DYMTGGTLHSFALTGVHDKGCKPSRYTRESKLTHMGNRRRTRACFASWVL
SWLEDPPFSYIWK
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mRNA from alignment at CM002459.1:1035528..1036012+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2717 ID=rna2717|Name=rna2717|organism=Nannochloropsis gaditana|type=mRNA|length=485bp|location=Sequence derived from alignment at CM002459.1:1035528..1036012+ (Nannochloropsis gaditana)
ATGAGAGCAGAAGTGGTAAGGAGAAGAGTGCAACCGGGGGTAAATCATAT
AGGGAGTCAGAAAAATAATTGGAGTCACCCTCAGGCAGCAGTCACCGATG
GGCTGCGTAGCGCAGGATGACAGAGTGAGCATACGAGCACAGAGAGAAAA
ACGATAAGATCCAACGGGTTAAAAAGTCGGACAGGGGGGTTCGTTGTCAC
TTGACCCCCCGGCGTCTTTTGATTACATGACCGGTGGGACTTTGCATTCT
TTTGCGCTGACAGGGGTACATGACAAAGGCTGTAAACCTAGTAGATATAC
ACGGGAATCGAAACTCACACATATGGGGAACCGGCGGCGGTGACACCAAT
ACTGATCCTGTCCCGTACACGGGGACTTAAACGGGTTTATTGTAGGCGTG
GCTGTATGTGAGGACACGGGCATGTTTCGCCAGCTGGGTTCTCTCTTGGC
TTGAAGACCCGCCTTTTTCTTATATTTGGAAATGA
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Coding sequence (CDS) from alignment at CM002459.1:1035528..1036012+

>rna2717 ID=rna2717|Name=rna2717|organism=Nannochloropsis gaditana|type=CDS|length=1026bp|location=Sequence derived from alignment at CM002459.1:1035528..1036012+ (Nannochloropsis gaditana)
ATGAGAGCAGAAGTGGTAAGGAGAAGAGTGCAACCGGGGGTAAATCATAT
AGGGAGTCAGAAAAATAATTGGAGTCACCCTCAGGCAGCAGTCACCGATG
GGCTGCTCGGACAGGGGGGTTCGTTGTCACTTGACCCCCCGGCGTCTTTT
GATTACATGACCGGTGGGACTTTGCATTCTTTTGCGCTGACAGGGGTACA
TGACAAAGGCTGTAAACCTAGTAGATATACACGGGAATCGAAACTCACAC
ATATGGGGAACCGGCGGCGGACACGGGCATGTTTCGCCAGCTGGGTTCTC
TCTTGGCTTGAAGACCCGCCTTTTTCTTATATTTGGAAATGAATGAGAGC
AGAAGTGGTAAGGAGAAGAGTGCAACCGGGGGTAAATCATATAGGGAGTC
AGAAAAATAATTGGAGTCACCCTCAGGCAGCAGTCACCGATGGGCTGCTC
GGACAGGGGGGTTCGTTGTCACTTGACCCCCCGGCGTCTTTTGATTACAT
GACCGGTGGGACTTTGCATTCTTTTGCGCTGACAGGGGTACATGACAAAG
GCTGTAAACCTAGTAGATATACACGGGAATCGAAACTCACACATATGGGG
AACCGGCGGCGGACACGGGCATGTTTCGCCAGCTGGGTTCTCTCTTGGCT
TGAAGACCCGCCTTTTTCTTATATTTGGAAATGAATGAGAGCAGAAGTGG
TAAGGAGAAGAGTGCAACCGGGGGTAAATCATATAGGGAGTCAGAAAAAT
AATTGGAGTCACCCTCAGGCAGCAGTCACCGATGGGCTGCTCGGACAGGG
GGGTTCGTTGTCACTTGACCCCCCGGCGTCTTTTGATTACATGACCGGTG
GGACTTTGCATTCTTTTGCGCTGACAGGGGTACATGACAAAGGCTGTAAA
CCTAGTAGATATACACGGGAATCGAAACTCACACATATGGGGAACCGGCG
GCGGACACGGGCATGTTTCGCCAGCTGGGTTCTCTCTTGGCTTGAAGACC
CGCCTTTTTCTTATATTTGGAAATGA
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Synonyms
Publications