rna2716, rna2716 (mRNA) Nannochloropsis gaditana

Overview
Namerna2716
Unique Namerna2716
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3038
Alignment locationCM002459.1:1035229..1035497 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100008g87.7823.mrna
Orig protein idgnl|cribi|Naga_100008g87.7823
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1035229..1035497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100008g87gene2597Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2716rna2716-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27931.1cds2708Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2716 ID=rna2716|Name=rna2716|organism=Nannochloropsis gaditana|type=mRNA|length=3038bp
CACTGTTCTGTTTCGACTCACCATTTTCCGCCACATACGTGCAGGCAGCC
ATGCGTGTCAGCTTACTTGGTACTGTTTTGGTGTCTGCCACGCTGTGGTC
TTTATCTACTGCTCAGGTTAAGACCAGCCAGGGAGATTTGAAGCTGCAGA
CAGTATGGGACAATATTTGGGGCGTTGTGCAGGTGGTATTCCTGGCGGAC
GGTAAGGTGCTCACAGTCCACAAACCCGGGGAACTACATGTCTACAACAG
TGTGGAGGCCAAGAGTCAGGACTACGTGACGCTCCTCGATATCAAGGACC
AAGTCTACTCCTGGTGGGACCACGGCCTCCTCTCTGCCTCTTTCCACCCC
CAGTTCCCACAACAACCCTATCTTTACATTGCATACTCCTCCGAGTCTCC
TGGAAACCCCTGGCAAGATCAGTGCGTGCCAGATCCTAGGAAAGTGGCCA
TGACTAACCCCCCAGACACGCGTCCCTATTGCAAGACCATGGCCAAACTT
GTCCGTCTCAAGGTCGATCCTGACCTCACCAGCGCGAAATTTGACCAAGA
GCTCTTCCAAGACTGGTGCTCCAGCACGTACACGCACCACGTGGGGACGA
TCAACTGGCTGGAGGATGGGAGCATGATTTACGGGGCCGGCGACGGATCG
CATTTCCAGGGGCTGGATCATGGCCAGCCTCAAGACGAGTGCACGGACCC
CAAGGGCCCCAAGGACCAGGGTGTCTTCACCGCCCAGAAGGACGCTTACC
TGCGCGGAAAATTCCTGCATATCTCTCCCGCGGCTGTCCTCAAGAACGGA
TACCTGCAGGGGGACCAAGACTACACCCAGATCAGCAAGGGCTCTCGGAA
CCCCTTCCGGACCACGGTCGACCCCAAGACAGGGGACATATACATCGGGG
ATGTCGGCTCGAGCGTGTGGGAGGAGATCAACCGAATCCCCAATCCGTTG
AGCCCGGATTACAGGAAACCAAATTTCGGCTGGCCCTGTGTGGAAGGCGT
TGATGCAGTCAGCGACATCTACCAGACATGGTTGCGCGCAGAAGGCCTTT
TGGCCACGTGCCAGGACGTGTACGACGGGAACTTCACCAAGCCAGTCTTT
TCCTACCGGTACGGTGCCGTGGACCCGGACTTTCCTGACGAATGCAAGGA
GGCCGACGCCTCCATCAGTGGGATCACCTTCTACACGGGCGACAAGCTGC
CATACAGGTTCCAGAACAAGCTCTTCTGGGTTGACTACAGCAAAAAATGC
GGCTTTTGGTTCGACCAAACCGCGGACGGGACGCCTGATTTCTCGCACGC
CCACGCCTTCATGACCACGACAGGGGCCCAAGCAGGTGGGGTCACGGACA
TCAAAACGGGCACGGATGGGTACCTTTACGTCGTCGACTACGCGGGCGGA
AAACTCTATCGGTTCGGCGCTACGGACGACACGCGAATGGACGCACTCAT
GAACGGGGGAGGGCCCGAGGCGGTGGTGGGCGACACGAAGATGTGGATAG
AAACGGCGCCTTCCACCTACAATTGGCAGTACGGGGATTTGGTCACCTAC
CAGCTCATGACTCCCCCTGGCTTCCCGGCCATCGACCCGGACAAGGTGAA
GTGGCGAGTCACGAACGGGCACTGCGTCAAGAACCCGTGCACGGGGTCGA
ATGACTGCCATTTCCACGAAGTCTCCTTGACGAAGGACAGTCTGACGGGG
ATGAAAGGCTCGTTCCGGCCCTCCCCGCACCCCATGGAGAGTTTCATCAA
GATTCTTGGGACTGTGGAGATGCCGGATGGTTCTACGGAGAAGGTGGAAT
TCACGACACACGCTCTCGCGTACAATTACAAGCTGACCTCCGATCCCCCA
GGCTTGCCTATCATTATCGACGAGTTCACATGCTTGGTCTCACCCTGCAT
CACGAGCCAAATGGCGAAAACGAACCCCGGGTTTGCAGCGCAGAATGTGC
AAGTGTTTCAAGATGAAATTTACAAATTTGACCACTGGGTAGCCACCAGT
GTGAGCACGGGCAGAGCGAAGGTGGTTGCCCGCACCATCTACGAGGAGAC
TGCCGACGGGGACTACGCCGTGGAAGCTCGTTATGTCAAGACGAAGATGG
CCGCCATTGACGACCCCACGCTGGGGGTCCCTGCCAACGTGCAAGCGGAT
GGGGAATTCGAGCGTGTTTCCGTGACTTGGGAACCCCATGCCCCGGGGCC
GAACGCGCCTGACTTCATCACGATCAGTATCAGAGACGCGACGACACACG
AGCTGGTGAAAGAACACATGACTACGGCGGCCAAGGGGGCCGTCGTTCTC
CCTCTCCCTTCCGCGCCTGCCGACTACACGGTCGACATGTCCTGGGTCTC
GTCCTCCCGCAATGCTCGTGGCATCCGCACGTTGCCCGTCGCCTTCTCCA
GTAAGGCCGAACTCACGACGGGGAAACTCGCATGCCTTGCCGGGACCCAA
TTTGCAGAGGAACTGAAGAGCTCACCGATTGCCGGCCTGGGCGACCAGTA
TCAGATCGCGCTCTTGGGGACCTATCCCACCACGCTCGCGCAGGGCCAAC
AGGTACGCTTGACCTTCGACGTGGTCTCGGCGACGGCTTCCCAATTGATG
GTCAACATCCTGGACAAGAACGATTACTCCTGGCTCGCGGGGAAGGTCGT
GAACATTCCTGCGAAAACGGAGAGGATTGTCGTCGTGGACTTTACCATCG
ACACAGAGGTGACTCACAAGGCAGAATATTTCATCGACGCCCTCCTCATT
CAAGACGCGAAGGACTACACCTCTGCCCTGGTCGAAGACACCTCCGCTGG
CGGAATCGTGGGGATCGCCGTGCCGGACGCCACCCCAGTGGCGGCGACCA
CAACCATCCCTCGGCGGCAAATCCTTAGAAAGATTGGAGGACGGATGGGG
TGGGGCAAATCAAACGGGCGCCTGGTTGTGGGTATATTTCCACACTCGGA
CGGGCCCCACGAAAGTGAGACCTCAACACAGGAAGCGGTCCTTGGGTGTA
ATAACAAGCGTGTCAGACGTAGGGGAGTACGAAGCTGA
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protein sequence of rna2716

>rna2716-protein ID=rna2716-protein|Name=rna2716|organism=Nannochloropsis gaditana|type=polypeptide|length=70bp
MTDGTEKTGGKRHERSETTRRERIVWKIAVLVTCSTCGVSVCLGLRIFEE
DNACRGTYIPNQPINFGLSE
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mRNA from alignment at CM002459.1:1035229..1035497+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2716 ID=rna2716|Name=rna2716|organism=Nannochloropsis gaditana|type=mRNA|length=269bp|location=Sequence derived from alignment at CM002459.1:1035229..1035497+ (Nannochloropsis gaditana)
ATGACGGATGGTACTGAGAAGACTGGTGGAAAGAGACATGAGAGGAGCGA
GACGACGAGAAGAGAGCGAATAGTGTGGAAAATAGCTGTGCTTGTAACTT
GTTCCACTTGTGGTGTAAGCGTATGCCTTGGCCTCCGCATTTTTGAGTCC
TAGACTACACCACTTGCCTTGGATAATAAAAATCACCCCTTTAGAGAGCA
AGAGAGGATAATGCCTGTCGAGGCACTTATATCCCTAACCAGCCCATCAA
TTTCGGTCTCTCTGAATGA
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Coding sequence (CDS) from alignment at CM002459.1:1035229..1035497+

>rna2716 ID=rna2716|Name=rna2716|organism=Nannochloropsis gaditana|type=CDS|length=426bp|location=Sequence derived from alignment at CM002459.1:1035229..1035497+ (Nannochloropsis gaditana)
ATGACGGATGGTACTGAGAAGACTGGTGGAAAGAGACATGAGAGGAGCGA
GACGACGAGAAGAGAGCGAATAGTGTGGAAAATAGCTGTGCTTGTAACTT
GTTCCACTTGTGGTGTAAGCGTATGCCTTGGCCTCCGCATTTTTGAAGAG
GATAATGCCTGTCGAGGCACTTATATCCCTAACCAGCCCATCAATTTCGG
TCTCTCTGAATGAATGACGGATGGTACTGAGAAGACTGGTGGAAAGAGAC
ATGAGAGGAGCGAGACGACGAGAAGAGAGCGAATAGTGTGGAAAATAGCT
GTGCTTGTAACTTGTTCCACTTGTGGTGTAAGCGTATGCCTTGGCCTCCG
CATTTTTGAAGAGGATAATGCCTGTCGAGGCACTTATATCCCTAACCAGC
CCATCAATTTCGGTCTCTCTGAATGA
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Synonyms
Publications