rna2708, rna2708 (mRNA) Nannochloropsis gaditana

Overview
Namerna2708
Unique Namerna2708
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1203
Alignment locationCM002459.1:1014171..1015641 +

Link to JBrowse

Properties
Property NameValue
Productcell-derived factor 2 like protein
Orig transcript idgnl|cribi|Naga_100008g80.7834.mrna
Orig protein idgnl|cribi|Naga_100008g80.7834
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1014171..1015641 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100008g80gene2591Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2708rna2708-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27942.1cds2700Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2708 ID=rna2708|Name=rna2708|organism=Nannochloropsis gaditana|type=mRNA|length=1203bp
ATGCCTGCAATGGCATCTTTGCCCTACAAAGCTCACCATCCTTTACAGCA
GCAGATTCTTAATCAGTACATGCAAGGCTCTACTCCCTCGACTTCGTCCC
TGCCAACACTGAACGCAGGGCTCTACACCGTACAAGAGACCTCCAAACTG
CCCGTGAACCTCCCGCAGCACATGCGCATTCCTAATCACCAAGCTATACC
CGTTCCTACGCCAGCCATAGGCCTCTATCACCCCATGATGGCTACGTGGA
ACCAGCACATTTTGGCTGCAGGAGCCAATCAGCACTTTTTGTGGCAATTT
CCCAACATGCCCATGGCTGCCATGCTTGGTGTGTCACACCCGCGGCTGAT
GAGCCAGCAAATTCAAATGCCACAGCACGCGCTTTTGAAGCAGGAAAAAA
GGACCCAATTTGCTTTTGCCGCAGCTCCATCTTCTAATGTTGCTCCTCCA
AAATCTACAGACGCTATAGAGGCACCGGTAAAGCTGGCCTACCCGATCGG
ATCCATGCCCGAGCACGTACTTATGCCGCCCGGGCAAGTTAACGCTCAAG
CCTGGCATATGCCCAAGGCCACGTTGCCTTTCACATTTGGTAATGCACTA
TCCATGAATGCTCAGGCGCCGCATTTCCAGCCAACCTCTCTGACGCTGCA
GGCCCCTGAGATTGCTGGTGGGAATAAGGGGTTTGTGGGGGCGTACAGTC
CTAATTCTAGGAAGAGGCGTATCGAACGCTTCCATGAGAAGAGGACCAAA
CGGAACTGGGATCCTAAGAAGAGGAAAACCACAGGCGTCTATATGGGTCG
TCAAGACCTGGATACCATGGTCCGTGTTCGCGGACGGTTCACCAAAAAAG
TGGCACGAGTTGAACAGCAGGCGGACAGGAAAGAGGAGAGGGCGGTCACA
CTCTCCTTAGCAGGCATGACTGAGACGGAAATCAAGGCCAACAAGTCGAA
AGATATGCACCTGGGAATGGGGATGGAAAAGGCCGGAGGATCGGAGGTCT
ACTGGGAGAAAGACGCCGACATGGAGTACAGCGAGGAGATGGACTTTTCC
GACACTTTACTCGACCTTTCACCGGTCGAGATGGATCAAGAATACGAACC
CATGTTTTCAAAATGCTTGGGGGTGTGGTCGGAGGGAGACAATGGTCCGT
CAGCCAATCACATGCGTACCTTGCCAGCGATGTCATTTGACATAGCCCTT
TGA
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protein sequence of rna2708

>rna2708-protein ID=rna2708-protein|Name=rna2708|organism=Nannochloropsis gaditana|type=polypeptide|length=256bp
MMAFLKHLEAGSNPNSKFHRQRSNTPATSEMRRNMMLSTAAGWLLLTLVT
PVLSLEDDIMTFGSVVKLQHVPSKYFLHSHQISWGSGSGQQSVTAHGSAD
DRGGLWVVAEGDNDPFKEGGSPVACGTAIRLGHMETSKNLHSHFFSSPLS
NQQEVSCFGDGGRGDSGDNWEVVCMAPGAKFWRRGDEVRFKHKDTGRFLQ
TEAKHRFTQKNCPNCPIVGQQEVFCHQTGGAETVWKAVQGIFIHPRSDED
SGHDEL
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mRNA from alignment at CM002459.1:1014171..1015641+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2708 ID=rna2708|Name=rna2708|organism=Nannochloropsis gaditana|type=mRNA|length=1471bp|location=Sequence derived from alignment at CM002459.1:1014171..1015641+ (Nannochloropsis gaditana)
GATCATACCATTTGTGCTCCACTCGTCGCCTTACCCGTTTATCTTCCCTT
CACGTACAACATGGAAACATGATGGCTTTCTTGAAACATCTCGAGGCGGG
CTCAAATCCAAATTCTAAATTCCACAGACAGCGATCAAACACACCTGCTA
CAAGtgagatgaggaggaacaTGATGCTCTCTACTGCTGCTGGCTGGCTG
CTGCTCACATTGGTCACACCCGTACTGTCGTTAGAAGGTATCTATTGTTT
TCGTAATTTTACGCATATATAAGTACGAAGACTTGTCATGCGAATGAATT
TTTTTTTGGCTGCGTATCATTTTTGTTCAAGTATGGGCTCCGAGTGTGGG
TCCGCTCCTCATATCACAAAAGTGTAGCCTTCTTTTTGATTGGCAGTTTA
TTGCAGTAGACCATTTGGAGTTGCCATCGAAGTCACTTCGATGTAAGAAT
CGCGAAGATTGCCCTCCGAAATGTATTTGTTTGAAGGTCATTCCATCTGG
AAAGGCGTTCAGCGGGTTTAAGTGCGGTCTCAACACTCTTCATATGTGTT
TGGAGGGGCATCTTTCTTACTCAAGGCCCGaatttttcaatttttgaTTC
ATGCATTGCTGGTGCTTTCTCGTCTCAAGCCTTTCTGTTTTCCTCGCGTT
TTCTGGCATTAACAGATGACATCATGACCTTCGGCAGCGTTGTCAAACTT
CAGCACGTTCCCAGCAAGTACTTTCTCCACAGCCATCAAATTAGTTGGGG
CTCAGGCAGTGGGCAACAGTCCGTAACAGCCCATGGAAGTGCGGATGATC
GAGGAGGCTTGTGGGTTGTAGCTGAGGGAGACAACGACCCGTTTAAAGAG
GGAGGCTCCCCGGTGGCTTGCGGGACCGCCATCCGGCTTGGACACATGGA
GACCTCCAAAAACTTGCACTcgcattttttttcatccCCTCTTTCAAACC
AGCAAGAGGTCAGCTGCTTCGGGGACGGTGGGCGCGGGGATAGTGGGGAT
AATTGGGAGGTAGTATGCATGGCCCCTGGTGCTAAATTCTGGCGAAGGGG
GGACGAGGTCCGATTCAAGCACAAGGACACGGGTCGATTCCTGCAGACGG
AGGCCAAGCATCGGTTTACGCAGAAGAATTGCCCAAACTGTCCAATTGTG
GGCCAACAGGAGGTCTTTTGCCACCAGACCGGTGGAGCGGAGACAGTGTG
GAAGGCTGTTCAAGGCATCTTCATCCACCCTCGGAGCGACGAGGACAGCG
GGCACGATGAGCTTTGATGCGGATAGGATGAAGCTGTCAGACAGAGTATC
AATAGAACGAAAGCCGATGTAGCACGAAGGGTGCCGTCCCGACCGGGAGA
GGCCTTGAAAGTCATGATGCAACGCAGATCTTGAAATCAGTTGTGGTCAG
GATCAATTAAAGTAAACTATACAGGGGTGCGCataaaagaaaagaaaact
AAGCCCTCAATTCTTCATATC
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Coding sequence (CDS) from alignment at CM002459.1:1014171..1015641+

>rna2708 ID=rna2708|Name=rna2708|organism=Nannochloropsis gaditana|type=CDS|length=1542bp|location=Sequence derived from alignment at CM002459.1:1014171..1015641+ (Nannochloropsis gaditana)
ATGATGGCTTTCTTGAAACATCTCGAGGCGGGCTCAAATCCAAATTCTAA
ATTCCACAGACAGCGATCAAACACACCTGCTACAAGtgagatgaggagga
acaTGATGCTCTCTACTGCTGCTGGCTGGCTGCTGCTCACATTGGTCACA
CCCGTACTGTCGTTAGAAGATGACATCATGACCTTCGGCAGCGTTGTCAA
ACTTCAGCACGTTCCCAGCAAGTACTTTCTCCACAGCCATCAAATTAGTT
GGGGCTCAGGCAGTGGGCAACAGTCCGTAACAGCCCATGGAAGTGCGGAT
GATCGAGGAGGCTTGTGGGTTGTAGCTGAGGGAGACAACGACCCGTTTAA
AGAGGGAGGCTCCCCGGTGGCTTGCGGGACCGCCATCCGGCTTGGACACA
TGGAGACCTCCAAAAACTTGCACTcgcattttttttcatccCCTCTTTCA
AACCAGCAAGAGGTCAGCTGCTTCGGGGACGGTGGGCGCGGGGATAGTGG
GGATAATTGGGAGGTAGTATGCATGGCCCCTGGTGCTAAATTCTGGCGAA
GGGGGGACGAGGTCCGATTCAAGCACAAGGACACGGGTCGATTCCTGCAG
ACGGAGGCCAAGCATCGGTTTACGCAGAAGAATTGCCCAAACTGTCCAAT
TGTGGGCCAACAGGAGGTCTTTTGCCACCAGACCGGTGGAGCGGAGACAG
TGTGGAAGGCTGTTCAAGGCATCTTCATCCACCCTCGGAGCGACGAGGAC
AGCGGGCACGATGAGCTTTGAATGATGGCTTTCTTGAAACATCTCGAGGC
GGGCTCAAATCCAAATTCTAAATTCCACAGACAGCGATCAAACACACCTG
CTACAAGtgagatgaggaggaacaTGATGCTCTCTACTGCTGCTGGCTGG
CTGCTGCTCACATTGGTCACACCCGTACTGTCGTTAGAAGATGACATCAT
GACCTTCGGCAGCGTTGTCAAACTTCAGCACGTTCCCAGCAAGTACTTTC
TCCACAGCCATCAAATTAGTTGGGGCTCAGGCAGTGGGCAACAGTCCGTA
ACAGCCCATGGAAGTGCGGATGATCGAGGAGGCTTGTGGGTTGTAGCTGA
GGGAGACAACGACCCGTTTAAAGAGGGAGGCTCCCCGGTGGCTTGCGGGA
CCGCCATCCGGCTTGGACACATGGAGACCTCCAAAAACTTGCACTcgcat
tttttttcatccCCTCTTTCAAACCAGCAAGAGGTCAGCTGCTTCGGGGA
CGGTGGGCGCGGGGATAGTGGGGATAATTGGGAGGTAGTATGCATGGCCC
CTGGTGCTAAATTCTGGCGAAGGGGGGACGAGGTCCGATTCAAGCACAAG
GACACGGGTCGATTCCTGCAGACGGAGGCCAAGCATCGGTTTACGCAGAA
GAATTGCCCAAACTGTCCAATTGTGGGCCAACAGGAGGTCTTTTGCCACC
AGACCGGTGGAGCGGAGACAGTGTGGAAGGCTGTTCAAGGCATCTTCATC
CACCCTCGGAGCGACGAGGACAGCGGGCACGATGAGCTTTGA
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Synonyms
Publications