rna2703, rna2703 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2703
Unique Name	rna2703
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1651
Alignment location	CM002459.1:1002363..1004814 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100008g74.7928.mrna
Orig protein id	gnl\|cribi\|Naga_100008g74.7928
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:1002363..1004814 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100008g74	gene2586	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28036.1	cds2695	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2703	rna2703-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:1002363..1004814-
coding sequence from alignment at CM002459.1:1002363..1004814-

mRNA sequence

>rna2703 ID=rna2703|Name=rna2703|organism=Nannochloropsis gaditana|type=mRNA|length=1651bp
GGACCTCATTGCAACAAATATCCTTCGAGAAATGCTCATTCTTCTCCACT
ACACAGCCGATGCGTGCATCCTTTACAAGAAGAAGTCTTGCTGTGGTCAC
GTGCTACGAGCGGTGCGCTAGCATGACGGGTAGTACCACCTGTGCCGCAC
GAGTACGTACATCGCTGGAGGAGATACCTACATCATTGTTCCGCTTCCAG
GAAATCCGCCGCCCTGGACCCACAAAGCCACAACGGAGCCGTTATTCATC
CGCAACGTCCACATGGGATCCTCAAATCTTGGCGACGGAAGGAAAACTAT
GGGAGGTGGACTTGACGAGCGGGGAGGGCGACGGCAGGCGAGGGGTCATA
CAATTAGCTGGGCCTGAGGCACCAAAACTAGTCCAAGGATTGATAACCAA
CGATATTATCCATTTGACGGGAAGTAAAGCGTCTTTAGCTGCTGGATTTT
TGACAAACAAAGGTCGGCTCATCACCGAGAGTGTCATCACCATTGCAACC
GATGCCAAAGAAGCCCCGCACGGTGGTCCGGACAAATTCTTCTTGGACGT
GCCTATAGACGTCAAAAAGGGGCTTTTACAACATCTGCGCCTCTTTAAAT
TACGGTCTAAAGTCACGATCACAGATTTATCCTCGACAGCACGCGTGTGT
GCACTAGTCGGTTTGCCGCATGCTCGGGTTTCTGATTTGGAGCGAGTTCG
AGAGCATTGGAGTGCGCGTGGCGCGGAGGTGTTGGGCCTGGGACCCGATC
CTCGCGTCATGTTGGGAGATCGATTCCCTTTAGGCATCCGAGGCATCATC
CATTTCCCCGATCCCTCCTCGCCCCCGTCATCATTGCCCTCATCGGCCCG
GCCCTTGCCCTGCACGCAGGAAGCGCGCGAGGCCTTGGAGGCTTTAAGGT
TCCTGTACGGCGTGGGAGAAGGCCCCGACCTGGTGGAACGCCTTCCATCA
GAATGCAATCTAGACCTGACCCACGCCATCAATTTTCACAAGGGCTGCTA
CCTCGGCCAAGAGCTGACTGCCCGGACGCAATTCAAAGGCGTGATTCGGA
AGCGCCTATTGCCTGTGTTCCTCTTCCCAGACTCCCTCCCTCCTCCCTCG
TCCAAGGTAGAGGCAGACATGCAGCGCCCAGTACAAAAATTGGGTGACCT
CCTCCTGCCGTCGAACGCGAACCCTCTGGCTGCTCCTTTCCTGGCCGGGC
CGCCCAGCCCGTCGCCCGCCCTCGTAAAGGGTGCCGAGATCATCGACAAG
GCAAGTGGCAAAGCCGTCGGGTCCTTGGTCTCCTTGGCGACAGGCAGCAA
TCTGGGCCTGGCGCTGCTTAGACTCGAACCCACTTTGGGGGCAGAACAAG
GGGTGAAGCTGGTCGCGCGCTCCCCGGGAGCGGAAGGCGAAAAGCGTCAA
CAGCAGGTCTTGGCTTTTTTGCCGGATTGGTGGCCGTCGGGAATAGACCT
TGCCACTGGGAAAATTCCGCTTTAGGGGTGGGGGGGGGGGGGGGCATGTT
GACGAAGAGGAAGGCGACTTGATACTCCAATAATTTTAAGAAGAAATGTC
AAATTTAAATAAATCTAAGGCGTTAAAGATGTGTCGTGTTTGTCAGACTT
ATTGTGGATGAATTTCTTTGTTTTCAACCATGGACATGGAAGCCCTCACG
C

protein sequence of rna2703

>rna2703-protein ID=rna2703-protein|Name=rna2703|organism=Nannochloropsis gaditana|type=polypeptide|length=650bp
MNMRLRRIVYVILFCALAFQHVQTFATTAESAESVPVLDECLDEDLPQAP
KKVEVEARPRAPRLGDVVANVKNKVPVEVPGWFAGMWSSMRQIAAPHVQK
VIEYGGEMLRPGEEIADRCKRRRKTRTSSTEGGLDACALLDVSWSLGRQL
GALSSNASSRTAWWLAREVPRVILPFHLLWVDVAVDISPVTSSDVASIIL
HQRPYWVVQACDVFSAFFARVLQRLPMLDFLMNARYDKLYIHDPACPLVQ
VDGLVFRAPLTPDGFCETRPCQGESSITGQFPPGEHASYCECDLPTGYCR
LRVEPLRDFQVLVDEPLAFKRFAAHASSEVAWVTVPEWLPPWARLTFQGL
FPRYLFNFLVGIILLYSAETLAESRLFHAGIAALLGLFSGLVLAGLLLNH
VFRTVRRLEPFSGLATLLTSATAMLLYQRLGRHSLLPLTQQLLGALWADG
KGQLVIVACALLGVGLTWGMGWFLETEEEAKERPGWLHLYFNGQHNIRVA
LTAVALFFLWRAVPTPDLGVLLLLLVLTRGFWGHALHRLDMYLHRSPQTH
RFLARASTFAPAGSWRSERRPRARIGDEVEEEEEEEDYTTRELQKLRAYV
QRYPEATHRVRHGKMDLARFREGGEDFLVEEEDEDAEKGWEGRRVGCCVQ

mRNA from alignment at CM002459.1:1002363..1004814-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2703 ID=rna2703|Name=rna2703|organism=Nannochloropsis gaditana|type=mRNA|length=2452bp|location=Sequence derived from alignment at CM002459.1:1002363..1004814- (Nannochloropsis gaditana)
CAGGCGCGGGTGGCGGAGCGGGTTGTGTAAGTTCTTCATTCCTCGCGAGC
CTTTCCGTGTTCCAGTGGGCCGTCTTTGCTATTTTTTCGTCATCATCATC
ATCATCATCGTCATCCAAAAGGATAAATTACCATGAACATGCGGTTGCGC
AGAATAGTCTATGTGATTCTCTTTTGTGCATTGGCATTTCAACACGTCCA
GACCTTTGCAACGACGGCAGAATCAGCCGAATCGGTTCCTGTCCTCGACG
AGTGTCTTGATGAAGACCTGCCGCAAGCACCCAAGAAGGTGGAGGTGGAG
GCCCGTCCTCGCGCCCCTAGGCTAGGTGATGTAGTGGCCAATGTTAAAAA
CAAGGTCCCTGTCGAAGTGCCGGGGTGGTTTGCCGGGATGTGGTCAAGTA
TGAGGCAAATTGCGGCCCCGCACGTCCAGAAGGTGATTGAGTACGGTGGG
GAAATGCTCCGTCCTGGGGAGGAGATAGCAGACCGGTGCAAGAGGAGACG
CAAAACGAGGACTTCCTCAACAGAGGGAGGTCTAGACGCTTGTGCGTTGC
TTGATGTCTCCTGGTCTCTGGGTCGACAGTTGGGTGCACTCAGCAGTAAC
GCGTCGAGCAGGACAGCGTGGTGGTTGGCGCGGGAAGTGCCCCGAGTCAT
CCTTCCCTTCCATCTCTTGTGGGTGGATGTGGCGGTAGATATCAGCCCCG
TCACGAGCAGCGACGTCGCGTCGATCATCCTGCACCAACGTCCTTATTGG
GTAGTGCAAGCCTGCGACGTATTCTCCGCCTTTTTCGCGCGGGTCCTCCA
GCGACTCCCTATGCTCGACTTTTTGATGAACGCCCGCTACGACAAACTTT
ACATCCACGACCCGGCATGCCCCCTCGTGCAGGTTGACGGCCTCGTCTTT
CGCGCCCCCCTCACGCCCGACGGCTTCTGCGAGACGCGGCCTTGCCAAGG
AGAGTCCTCGATCACCGGCCAATTTCCCCCCGGGGAGCACGCTTCCTACT
GCGAATGCGACCTGCCCACAGGTTACTGCCGGCTGCGGGTCGAGCCTCTC
CGCGACTTCCAAGTACTGGTCGACGAGCCGCTGGCTTTCAAGCGTTTCGC
CGCGCACGCCAGCAGCGAGGTGGCGTGGGTGACCGTGCCGGAGTGGTTGC
CTCCCTGGGCACGATTGACCTTTCAAGGGCTATTCCCCCGCTACCTCTTC
AATTTCCTGGTGGGAATCATCCTGCTCTACTCGGCGGAGACCCTGGCTGA
GTCCAGGCTCTTCCACGCCGGCATAGCTGCCCTTTTGGGCCTTTTTTCCG
GTCTAGTGCTGGCGGGGCTGCTCCTCAACCACGTCTTCCGCACGGTCAGG
CGCCTGGAGCCTTTCTCTGGCCTGGCCACGCTCCTCACGTCCGCCACAGC
TATGCTCTTGTACCAACGGCTCGGCCGGCACTCCCTTCTCCCCCTCACCC
AACAGCTCCTGGGGGCTCTGTGGGCGGATGGGAAAGGGCAACTGGTGATT
GTCGCCTGTGCCCTGCTCGGAGTGGGCTTGACTTGGGGCATGGGATGGTT
TCTCGAGACCGAGGAGGAGGCGAAAGAGCGCCCAGGCTGGCTGCACCTGT
ATTTCAACGGACAGCACAACATCCGGGTCGCTTTGACGGCGGTGGCGCTC
TTTTTCCTATGGCGCGCGGTGCCCACGCCCGATCTGGGCGTGCTCCTGCT
GCTGCTGGTGCTGACACGGGGTTTTTGGGGCCACGCCTTGCACCGACTCG
ACATGTACCTGCACCGGAGTCCCCAGACACACCGCTTCCTGGCCCGGGCA
TCGACCTTCGCACCTGCCGGCTCCTGGAGGAGCGAGAGGCGACCGCGGGC
ACGAATCGGGGATGAGGTAGAGGAGGAGGAGGAGGAGGAGGATTATACGA
CGAGGGAATTGCAGAAATTGCGTGCCTACGTGCAGCGATATCCGGAGGCG
ACCCACCGGGTGCGGCACGGGAAGATGGATCTGGCGCGATTCCGGGAGGG
AGGAGAGGACTTTCTGGTGGAGGAAGAGGACGAGGACGCGGAGAAAGGAT
GGGAAGGGAGGAGGGTTGGCTGCTGCGTACAGTAAAGTCAACGACCGAGA
GGAAAGTGCAAAACATCGAGGAAAGGACACGACCGTGGGACAAGCGGGGA
GATGGGGGAATGGATGCGGTAGGGTGGGGGCGAGGGGGCTGCGATGGAGG
TGGGTAGAAGCTGTGCATATCAATTGACTGAGCGTGTGTATAAATGTGTG
TGGCATTCCGTATCGGTGGAATGAAAATAAAGTCTCATGTGCAAATACCG
TGACTTGCTTTCCGACAGTAGTTGCTCTAGAGCGAGCCTTACGGACCAAG
GCGCTCAGCCACCCCTACTTGCCTGGGGTCGCGTGAGGGCTTCCATGTCC
ATGGTTGAAAACAAAGAAATTCATCCACAATAAGTCTGACAAACACGACA
CA

Coding sequence (CDS) from alignment at CM002459.1:1002363..1004814-

>rna2703 ID=rna2703|Name=rna2703|organism=Nannochloropsis gaditana|type=CDS|length=1953bp|location=Sequence derived from alignment at CM002459.1:1002363..1004814- (Nannochloropsis gaditana)
ATGAACATGCGGTTGCGCAGAATAGTCTATGTGATTCTCTTTTGTGCATT
GGCATTTCAACACGTCCAGACCTTTGCAACGACGGCAGAATCAGCCGAAT
CGGTTCCTGTCCTCGACGAGTGTCTTGATGAAGACCTGCCGCAAGCACCC
AAGAAGGTGGAGGTGGAGGCCCGTCCTCGCGCCCCTAGGCTAGGTGATGT
AGTGGCCAATGTTAAAAACAAGGTCCCTGTCGAAGTGCCGGGGTGGTTTG
CCGGGATGTGGTCAAGTATGAGGCAAATTGCGGCCCCGCACGTCCAGAAG
GTGATTGAGTACGGTGGGGAAATGCTCCGTCCTGGGGAGGAGATAGCAGA
CCGGTGCAAGAGGAGACGCAAAACGAGGACTTCCTCAACAGAGGGAGGTC
TAGACGCTTGTGCGTTGCTTGATGTCTCCTGGTCTCTGGGTCGACAGTTG
GGTGCACTCAGCAGTAACGCGTCGAGCAGGACAGCGTGGTGGTTGGCGCG
GGAAGTGCCCCGAGTCATCCTTCCCTTCCATCTCTTGTGGGTGGATGTGG
CGGTAGATATCAGCCCCGTCACGAGCAGCGACGTCGCGTCGATCATCCTG
CACCAACGTCCTTATTGGGTAGTGCAAGCCTGCGACGTATTCTCCGCCTT
TTTCGCGCGGGTCCTCCAGCGACTCCCTATGCTCGACTTTTTGATGAACG
CCCGCTACGACAAACTTTACATCCACGACCCGGCATGCCCCCTCGTGCAG
GTTGACGGCCTCGTCTTTCGCGCCCCCCTCACGCCCGACGGCTTCTGCGA
GACGCGGCCTTGCCAAGGAGAGTCCTCGATCACCGGCCAATTTCCCCCCG
GGGAGCACGCTTCCTACTGCGAATGCGACCTGCCCACAGGTTACTGCCGG
CTGCGGGTCGAGCCTCTCCGCGACTTCCAAGTACTGGTCGACGAGCCGCT
GGCTTTCAAGCGTTTCGCCGCGCACGCCAGCAGCGAGGTGGCGTGGGTGA
CCGTGCCGGAGTGGTTGCCTCCCTGGGCACGATTGACCTTTCAAGGGCTA
TTCCCCCGCTACCTCTTCAATTTCCTGGTGGGAATCATCCTGCTCTACTC
GGCGGAGACCCTGGCTGAGTCCAGGCTCTTCCACGCCGGCATAGCTGCCC
TTTTGGGCCTTTTTTCCGGTCTAGTGCTGGCGGGGCTGCTCCTCAACCAC
GTCTTCCGCACGGTCAGGCGCCTGGAGCCTTTCTCTGGCCTGGCCACGCT
CCTCACGTCCGCCACAGCTATGCTCTTGTACCAACGGCTCGGCCGGCACT
CCCTTCTCCCCCTCACCCAACAGCTCCTGGGGGCTCTGTGGGCGGATGGG
AAAGGGCAACTGGTGATTGTCGCCTGTGCCCTGCTCGGAGTGGGCTTGAC
TTGGGGCATGGGATGGTTTCTCGAGACCGAGGAGGAGGCGAAAGAGCGCC
CAGGCTGGCTGCACCTGTATTTCAACGGACAGCACAACATCCGGGTCGCT
TTGACGGCGGTGGCGCTCTTTTTCCTATGGCGCGCGGTGCCCACGCCCGA
TCTGGGCGTGCTCCTGCTGCTGCTGGTGCTGACACGGGGTTTTTGGGGCC
ACGCCTTGCACCGACTCGACATGTACCTGCACCGGAGTCCCCAGACACAC
CGCTTCCTGGCCCGGGCATCGACCTTCGCACCTGCCGGCTCCTGGAGGAG
CGAGAGGCGACCGCGGGCACGAATCGGGGATGAGGTAGAGGAGGAGGAGG
AGGAGGAGGATTATACGACGAGGGAATTGCAGAAATTGCGTGCCTACGTG
CAGCGATATCCGGAGGCGACCCACCGGGTGCGGCACGGGAAGATGGATCT
GGCGCGATTCCGGGAGGGAGGAGAGGACTTTCTGGTGGAGGAAGAGGACG
AGGACGCGGAGAAAGGATGGGAAGGGAGGAGGGTTGGCTGCTGCGTACAG
TAA

Synonyms

Publications