rna270, rna270 (mRNA) Nannochloropsis gaditana

Overview
Namerna270
Unique Namerna270
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2106
Alignment locationCM002455.1:689184..690759 -

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Properties
Property NameValue
Productuncharacterized protein
Orig transcript idgnl|cribi|Naga_100026g46.10639.mrna
Orig protein idgnl|cribi|Naga_100026g46.10639
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:689184..690759 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100026g46gene259Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30385.1cds270Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna270rna270-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna270 ID=rna270|Name=rna270|organism=Nannochloropsis gaditana|type=mRNA|length=2106bp
TTTGACAAAGTCATCCCAGAAAATTGAGCCTCACATGCTTGTGACCAGGA
CGGCTGATTCATAATGACGCGTGCTGATTGTCTGGATGCGATGGGCATCA
ATAAAGAAGGCAAATATGAGTTGCTTTCACTGCAACGTTCCATTATCCGA
CGAGTCGTTGGTCATTCGTAACAGTGAGATTCAGACCTGTAGTATTTCCC
ATTTCTTCTTGCTCACATGAAATTTTGGCCCAGATACGTCAAGTAAAGTG
AGGAAAATTACACTTATCAACATTAAGGCCGCCTGACAGGGACAGAAGTG
TCCGTGCATTCCACTTGACTCTGCTAACCTCCCCACCCCCTGCACGTCAA
GCTAGTCAGGCTACTAGTCTTACTCCTATTCCGCAGCGTCTCCCCAAATA
ATGCAGCACTTAACTGATGCGTCACCCCAGCAGCGTCCGTACCCTAAGAG
TAAACTCATATCAAGTTCCTCGTCGCGAGACAAACGGAGGTCGTCGGTCC
TTCAGCGCCAACGTGCGGCCAGAAGAGAGCTGACAGATAGTTTACGAGCT
CTACATAGGGACACCATCGCAGAGGATGACGTGGACTCGATGACGAGAAG
TGGGAATGGTAGTCAGTTGTATGAAAGCGATGTCATTCAAGAGGACGATG
GAATGATGGTGGATGGTCAAGGACAAGTACAGGCTGAGAAAATCGCGCTC
AGGCGGAAGAGAGCGCGCGCTAGACAGGCAACAATTTACGCAAATCGATT
CGCGATTCCTGAGTGGATGATCGAGATACCTCACGATCTACATCCTACGG
GAGGGGGTGGTGGCTGGTTGGTCATGCCTCAACCTATGGGCAAAAGGTGC
TTGATGGCCGCCACGGGCGGGTTAACCTTAACACGAATGACAAGCGGAGA
GGTGCTACATAGGCTTGCTTCGCCGCTACCAAATGGTTCTGCATGGGCTA
AAGGTCCCAAAAACGGCTGGACCTTGCTGGATTGCGTGTATCAGGAATCA
AGTCGGACGTATTATGTCCTTGACCTCCTCTGCTGGCGGAAGATGGAGTT
GTATGACTGTGCCTGCGATTTCCGTCTTTTCTTCCTACGCTCCAAATTTG
CAGAAGAGATGGAGCACCGAGCGGGAGCCATTCTCATGCATGGCACAGAC
GCGAGCAACGAGACGTTCCACCTCGAACTGTTGCCGTGGTATGAGTGCCA
CAGGACAGGCCTGCAGATGCTCCGAAGCGCCTCCTTTCCCTTCGAGCAGG
ACGGGTTCCTGTTCTGGAACAAAGAGGGATACGTCCAGGCGGGGCTGACT
CCGCTCATTCTCCTCTGGAAGGACGCACACTCCTCTCACTCGCTCTACCG
GGACTCCCTGCTGCCACGATGGAGCGCCGTCCTGTCCGTGCGGCTGTGCG
AGGACCCTGGGGAGGGAAAGACACAGGACTACCTCTTGCTCACTCTAGAG
GGGTTGGCTGTGGGAAGTGTAACCCGCGATGAGTTTCACAGGTGGTCTCG
TTCACAGGAGCAGGGGGAGGCAGGGAGTATTGGTGGAGAAGGGGACATCG
AGGGAGAGGGTTTCCTGGTTTGTTTTTGGTACGAGGAAGCGACCGAGGAT
GAGACGAGTCAAGAGCACCGCCTGCACGGCCTAACCTATCGCAGGATCTG
CGTACCAAGCAGCGAGACCGCGGATTGCTGGAGCAAGCTTTTGTTCCAGA
GCCGCGTCAAAAGGGGCATGGAGGGAGGTGCCGTAACTTTCGACATGCTC
TTGTGCGACGTGGAAAGGGAGATCGCTCACACGGGCACGCTTCGAGAGGG
GATGATCCAGGCAAGAGGGAGTGAAAAGTGATGATAGAGAGAAGAGGAGG
CCCCCTGGGTGTCTGTATTTTGGGCCAGATATTAGGGCTACAAGGGGATG
TACTATATATAGTATAAGTTTTTACTATTTATGAACATACAAATATATAT
ATATATATATATATAAATGTGTATTGTATGAATACACTTATATATCCTGT
ATAATTCTTTCAGAGGACGTGTATACGTGCTTGTGGGCACTAGATGTAAA
TATGTAGACAAAAATTCTAAAACCTTACTCTGCACTATCTTCTCATTTTT
TAATGT
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protein sequence of rna270

>rna270-protein ID=rna270-protein|Name=rna270|organism=Nannochloropsis gaditana|type=polypeptide|length=411bp
MPLRKKLGLLLVSACGLHTAVGFMAQNPNKVLLSTMPTVSPYGRDATIAW
AAPVLLPTKPMPPVQPAGLGSKFYLPAFLPPWIARDTVRTKFSDDIFFLE
QSQTFVNVSVNIRSTVIRLKNGDLFVHAPVAPTPECVSLIKELGEVAYVV
LPVTAIEHKVYMARFASLFPKAKIYVAPGQFSWPVDLPLGFRVDGVLTEE
NKKSMPFIDEIDYTGWIFRPFTGSISEVAFFHRKSRTLLVTDAIIWIDDQ
PPEILRQAGVGQDLWKKMALQACFLGPPNLDTFQKIKQRLIVSPVIRVLV
VSRAKKEVAEWIKRVCEWKFERVIPAHFSAPIKAGPVDLQDAYAFLEEGE
TGADRGGKSLPFGFDFSALWQGRQGAVGRKGRGGKSVQFPEQDLKILKSL
NKFVSATGLAE
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mRNA from alignment at CM002455.1:689184..690759-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna270 ID=rna270|Name=rna270|organism=Nannochloropsis gaditana|type=mRNA|length=1576bp|location=Sequence derived from alignment at CM002455.1:689184..690759- (Nannochloropsis gaditana)
AGGGAACGAATCTTGAGAGTACGCTCATATCGCTCGTTTGAAGGCGTGCG
TGTGCGCGATAGCCTCTATGCGTGGATCTCTGATGGCTAAAGGGGGGGGA
GGTCGAAGAGGAACACTGACGATGTCCCACACCAACATCATCCGTAGGCA
AAGAAATCATGCCATTAAGAAAAAAATTGGGCTTGCTACTGGTATCAGCA
TGTGGACTCCATACAGCTGTGGGGTTTATGGCTCAAAATCCTAATAAAGT
CCTTCTCTCGACCATGCCCACTGTCTCACCTTACGGACGGGACGCCACCA
TCGCATGGGCAGCGCCTGTGCTCTTACCCACCAAACCGATGCCGCCGGTA
CAACCAGCGGGCCTTGGATCGAAGTTCTATTTACCAGCTTTTTTGCCTCC
ATGGATTGCGAGGGACACTGTCAGGACCAAATTCTCAGACGACATCTTTT
TTCTCGAGCAGTCTCAGACGTTCGTGAATGTAAGCGTTAACATCAGGTCT
ACAGTGATCCGCCTCAAAAATGGCGATCTCTTCGTGCACGCACCGGTGGC
GCCTACTCCCGAATGCGTTTCACTCATTAAGGAGTTGGGAGAGGTGGCAT
ATGTAGTGCTTCCGGTCACTGCCATCGAGCACAAGGTCTACATGGCTCGC
TTCGCCTCCCTCTTTCCCAAGGCGAAGATTTACGTGGCACCCGGGCAATT
TAGCTGGCCTGTTGACCTTCCGTTGGGTTTTCGAGTAGATGGCGTGCTGA
CCGAGGAGAACAAGAAGAGCATGCCCTTCATCGACGAAATCGACTACACC
GGGTGGATCTTCCGTCCCTTCACAGGCTCCATCAGCGAGGTCGCCTTTTT
CCACCGCAAATCAAGAACTCTCCTAGTCACTGATGCCATCATTTGGATTG
ACGATCAACCGCCAGAAATTCTCAGGCAAGCAGGCGTAGGGCAAGACTTG
TGGAAGAAAATGGCCCTGCAAGCTTGCTTTCTAGGCCCCCCCAATTTGGA
CACGTTCCAGAAGATCAAGCAGCGCCTGATCGTATCGCCCGTCATCCGCG
TTCTAGTGGTCTCCCGGGCCAAAAAGGAGGTGGCTGAGTGGATCAAGCGC
GTGTGCGAGTGGAAATTCGAAAGGGTCATCCCTGCGCATTTTTCGGCGCC
CATCAAGGCGGGCCCAGTCGACCTTCAGGATGCATACGCCTTCCTGGAGG
AAGGAGAGACAGGGGCTGATCGCGGTGGGAAATCACTTCCCTTTGGCTTC
GATTTTTCTGCGTTGTGGCAGGGAAGACAGGGGGCTGTCGGTCGCAAAGG
AAGGGGAGGCAAGAGTGTCCAGTTTCCTGAGCAGGATCTGAAAATTTTGA
AATCCTTGAATAAATTTGTTAGTGCCACAGGGCTGGCGGAGTGAGGAAAT
ACTCGAAGGAAGGGTACAAAGTATTAAAAACTATTAATTTAACATTAACA
TTAAAAAATGAGAAGATAGTGCAGAGTAAGGTTTTAGAATTTTTGTCTAC
ATATTTACATCTAGTGCCCACAAGCACGTATACACGTCCTCTGAAAGAAT
TATACAGGATATATAAGTGTATTCAT
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Coding sequence (CDS) from alignment at CM002455.1:689184..690759-

>rna270 ID=rna270|Name=rna270|organism=Nannochloropsis gaditana|type=CDS|length=1236bp|location=Sequence derived from alignment at CM002455.1:689184..690759- (Nannochloropsis gaditana)
ATGCCATTAAGAAAAAAATTGGGCTTGCTACTGGTATCAGCATGTGGACT
CCATACAGCTGTGGGGTTTATGGCTCAAAATCCTAATAAAGTCCTTCTCT
CGACCATGCCCACTGTCTCACCTTACGGACGGGACGCCACCATCGCATGG
GCAGCGCCTGTGCTCTTACCCACCAAACCGATGCCGCCGGTACAACCAGC
GGGCCTTGGATCGAAGTTCTATTTACCAGCTTTTTTGCCTCCATGGATTG
CGAGGGACACTGTCAGGACCAAATTCTCAGACGACATCTTTTTTCTCGAG
CAGTCTCAGACGTTCGTGAATGTAAGCGTTAACATCAGGTCTACAGTGAT
CCGCCTCAAAAATGGCGATCTCTTCGTGCACGCACCGGTGGCGCCTACTC
CCGAATGCGTTTCACTCATTAAGGAGTTGGGAGAGGTGGCATATGTAGTG
CTTCCGGTCACTGCCATCGAGCACAAGGTCTACATGGCTCGCTTCGCCTC
CCTCTTTCCCAAGGCGAAGATTTACGTGGCACCCGGGCAATTTAGCTGGC
CTGTTGACCTTCCGTTGGGTTTTCGAGTAGATGGCGTGCTGACCGAGGAG
AACAAGAAGAGCATGCCCTTCATCGACGAAATCGACTACACCGGGTGGAT
CTTCCGTCCCTTCACAGGCTCCATCAGCGAGGTCGCCTTTTTCCACCGCA
AATCAAGAACTCTCCTAGTCACTGATGCCATCATTTGGATTGACGATCAA
CCGCCAGAAATTCTCAGGCAAGCAGGCGTAGGGCAAGACTTGTGGAAGAA
AATGGCCCTGCAAGCTTGCTTTCTAGGCCCCCCCAATTTGGACACGTTCC
AGAAGATCAAGCAGCGCCTGATCGTATCGCCCGTCATCCGCGTTCTAGTG
GTCTCCCGGGCCAAAAAGGAGGTGGCTGAGTGGATCAAGCGCGTGTGCGA
GTGGAAATTCGAAAGGGTCATCCCTGCGCATTTTTCGGCGCCCATCAAGG
CGGGCCCAGTCGACCTTCAGGATGCATACGCCTTCCTGGAGGAAGGAGAG
ACAGGGGCTGATCGCGGTGGGAAATCACTTCCCTTTGGCTTCGATTTTTC
TGCGTTGTGGCAGGGAAGACAGGGGGCTGTCGGTCGCAAAGGAAGGGGAG
GCAAGAGTGTCCAGTTTCCTGAGCAGGATCTGAAAATTTTGAAATCCTTG
AATAAATTTGTTAGTGCCACAGGGCTGGCGGAGTGA
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Synonyms
Publications