rna2698, rna2698 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2698
Unique Name	rna2698
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	978
Alignment location	CM002459.1:994387..995639 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100008g69.7875.mrna
Orig protein id	gnl\|cribi\|Naga_100008g69.7875
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:994387..995639 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100008g69	gene2581	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2698	rna2698-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27983.1	cds2690	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:994387..995639+
coding sequence from alignment at CM002459.1:994387..995639+

mRNA sequence

>rna2698 ID=rna2698|Name=rna2698|organism=Nannochloropsis gaditana|type=mRNA|length=978bp
ATGAGGACGACGTTAGTGGCAGTGGCTGCGGCGGCCACCTTGAGCTGCGC
ATTCGCGTTTGTTCCATTCGTACCAGCAAGGCAAACGCAAAGGTCAACAA
CACGCATAATGGCAGCCACAAAGCCGAAGGTAACCAGCGTGGGAACGGAT
GACAAGACGGAAGTGCGCGAGTATTTCAATACTGAAGGGTTCCAACGGTG
GAACCGTATTTACAGTGAAGATGGAACCGTCAATAAAGTGCAAGCTGACA
TTCGTGTGGGACATCAGCAGACAGTTGACAAAATTTTGGGATGGCTACAG
GCGGATGGCGTGAAGGGCGAGAGCATTTGCGATGCTGGCTGCGGTGTGGG
TTCCCTGGCAATCCCCATGGCGGAGTTAGGAGCCAAAGTTGCGGCGTCGG
ACATTAGCTCATCCATGGCAAATGAAGGGCGACAGCGCGCAGAGGCGGTG
TTGGGAAAAGCGACAGCACGTGCTCGGTGCTCTTTTTCGACCTCGGACCT
GGAGGCTTTGAAGGGGAAGTACGATACCGTTACCTGTGTGGACGTCATGA
TCCACTACCCGACAGACAAAATGCAGGGTATGGTGAGCAAGCTAGGGTCC
TTGGCCAAGAAAAGGATGATCATCTCGTTTGCACCCAAGACGTGGTACTA
CGACATCTTGAAAAAAATTGGGGAGCTCTTCCCTGGTCCTTCTAAGACTA
CTCGGGCGTACTTGCACACGGAGGAAGATGTCCGCAAGGCATTGAAGGCG
GCTGGGTTCACGGTGCGGCGCACGGAGATGACAGCGACAAACTTCTACTT
CTCCCGACTCCTGGAGGCTGTCTATGCAAGGCATCGTAAATGGAAGGATG
GCGACCTTTCTAGGGGAATTGTAATACGAGGATTGTACGTTTTGCAAGGC
GGTTGCGGTTTGCTGGCGTGCGATGGAGTAATGGAGGAAGAAGAAAGCAG
GCCACAAAACCCAAAGCGGTCAACTTAA

protein sequence of rna2698

>rna2698-protein ID=rna2698-protein|Name=rna2698|organism=Nannochloropsis gaditana|type=polypeptide|length=267bp
MLLCVFLCLNTKKECGPHRLLLLYFEILAHNLWTQIDVLLNLNNALLFTG
DFLSIIDFRDSIEMASAAKSTTSTPGSGVFLAWAIHVYAWFLGSVVLVLA
NGIHLFLPPWCVIPIAGWAIGVGIHGAVTYFIVDKLNGNFKLLADTYILK
FQGGDLSLSCRSRSRGRQWNVEEHLVNEHLQGILHDGARRKEGSKESVSV
GLIRVIPPFLFHYCVFNIRYVLDEIDGHLTSVFIEERIGTREVLCLALGK
SLLSPTWMRTSKTHIVS

mRNA from alignment at CM002459.1:994387..995639+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2698 ID=rna2698|Name=rna2698|organism=Nannochloropsis gaditana|type=mRNA|length=1253bp|location=Sequence derived from alignment at CM002459.1:994387..995639+ (Nannochloropsis gaditana)
ATGCTTTTATGTGTCTTTCTTTGTCTGAATACCAAGAAAGAGTGCGGTCC
TCACAGACTCCTTTTATTATATTTCGAAATCCTAGCTCACAATTTATGGA
CACAAATTGATGTTCTACTCAATTTAAATAATGCCCTCTTGTTCACTGGG
GACTTCTTATCCATTATAGATTTCAGAGACTCCATCGAAATGGCATCCGC
CGCGAAAAGCACAACATCGACCCCGGGCTCGGGTGTTTTTCTTGCCTGGG
CCATTCATGTCTATGCCTGGTTTCTGGGAAGGTACAATAAACTCATTATG
TACATATTTATTAATTGGTCGTGTGCTGTAcggcgctttctcctcgtTGA
TTTTTACCtattccttcctttcttccgaTTGTGCCACCCTTCTCCTAGCG
TCGTCCTAGTTCTCGCCAACGGcatccatctcttcctccctccttggtgT
GTCATCCCCATTGCGGGTTGGGCAATCGGTACGTAGACTACTTCACGTGG
AAAATGTACGGCGCCTCCTGCACATTTTGTGGTGATTCCTTTTGTTTATC
GTTGATTGTTGGGTGAATTTGAAATACTTCCATGTGAAGAAATGCGATTA
TGTTCCAATCATGTCTCATTCATAAGTCATCGACATGTATCTCTCCTGAT
GAAGAGTGTACTTGCCTCACTGCTTTCCAATAAATCATGTACACAGGCGT
TGGAATTCACGGGGCAGTTACGTACTTCATAGTCGACAAACTTAACGGTA
ATTTCAAGCTTCTGGCTGACACTTACATCTTGAAATTTGTCCCCAAACCA
CTCATGGAGAACCTGGAGGCGAAAATGAAATGAACTTGGTtagcaaggag
gagacctGTCATTGTCGTGCAGGAGCCGATCTCGGGGAAGACAGTGGAAT
GTGGAAGAACATTTGGTGAACGAACATTTGCAAGGTATTTTGCATGACGG
AGCgcgtaggaaggagggaagtaaaGAGAGTGTTAGTGTGGGGCTCATCA
GAGTGTGCGTTACCCGTCCACTTTGCCTCAACTCTCGGTATTGACGCGGA
TGTGTTTTTGAAGCATACCCCCTTTTTTGTTCCATTATTGTGTTTTTAAC
ATCCGTTATGTGCTGGATGAGATAGACGGCCACTTAACGTCGGTGTTCAT
AGAAGAAAGAATAGGCACTCGCGAGGTCCTATGTTTGGCATTGGGAAAGA
GTCTCCTTTCACCCACTTGGATGCGCACATCGAAAACTCATATTGTTTCT
TAA

Coding sequence (CDS) from alignment at CM002459.1:994387..995639+

>rna2698 ID=rna2698|Name=rna2698|organism=Nannochloropsis gaditana|type=CDS|length=4020bp|location=Sequence derived from alignment at CM002459.1:994387..995639+ (Nannochloropsis gaditana)
ATGCTTTTATGTGTCTTTCTTTGTCTGAATACCAAGAAAGAGTGCGGTCC
TCACAGACTCCTTTTATTATATTTCGAAATCCTAGCTCACAATTTATGGA
CACAAATTGATGTTCTACTCAATTTAAATAATGCCCTCTTGTTCACTGGG
GACTTCTTATCCATTATAGATTTCAGAGACTCCATCGAAATGGCATCCGC
CGCGAAAAGCACAACATCGACCCCGGGCTCGGGTGTTTTTCTTGCCTGGG
CCATTCATGTCTATGCCTGGTTTCTGGGAAGCGTCGTCCTAGTTCTCGCC
AACGGcatccatctcttcctccctccttggtgTGTCATCCCCATTGCGGG
TTGGGCAATCGGCGTTGGAATTCACGGGGCAGTTACGTACTTCATAGTCG
ACAAACTTAACGGTAATTTCAAGCTTCTGGCTGACACTTACATCTTGAAA
TTTcaaggaggagacctGTCATTGTCGTGCAGGAGCCGATCTCGGGGAAG
ACAGTGGAATGTGGAAGAACATTTGGTGAACGAACATTTGCAAGGTATTT
TGCATGACGGAGCgcgtaggaaggagggaagtaaaGAGAGTGTTAGTGTG
GGGCTCATCAGAGTCATACCCCCTTTTTTGTTCCATTATTGTGTTTTTAA
CATCCGTTATGTGCTGGATGAGATAGACGGCCACTTAACGTCGGTGTTCA
TAGAAGAAAGAATAGGCACTCGCGAGGTCCTATGTTTGGCATTGGGAAAG
AGTCTCCTTTCACCCACTTGGATGCGCACATCGAAAACTCATATTGTTTC
TTAAATGCTTTTATGTGTCTTTCTTTGTCTGAATACCAAGAAAGAGTGCG
GTCCTCACAGACTCCTTTTATTATATTTCGAAATCCTAGCTCACAATTTA
TGGACACAAATTGATGTTCTACTCAATTTAAATAATGCCCTCTTGTTCAC
TGGGGACTTCTTATCCATTATAGATTTCAGAGACTCCATCGAAATGGCAT
CCGCCGCGAAAAGCACAACATCGACCCCGGGCTCGGGTGTTTTTCTTGCC
TGGGCCATTCATGTCTATGCCTGGTTTCTGGGAAGCGTCGTCCTAGTTCT
CGCCAACGGcatccatctcttcctccctccttggtgTGTCATCCCCATTG
CGGGTTGGGCAATCGGCGTTGGAATTCACGGGGCAGTTACGTACTTCATA
GTCGACAAACTTAACGGTAATTTCAAGCTTCTGGCTGACACTTACATCTT
GAAATTTcaaggaggagacctGTCATTGTCGTGCAGGAGCCGATCTCGGG
GAAGACAGTGGAATGTGGAAGAACATTTGGTGAACGAACATTTGCAAGGT
ATTTTGCATGACGGAGCgcgtaggaaggagggaagtaaaGAGAGTGTTAG
TGTGGGGCTCATCAGAGTCATACCCCCTTTTTTGTTCCATTATTGTGTTT
TTAACATCCGTTATGTGCTGGATGAGATAGACGGCCACTTAACGTCGGTG
TTCATAGAAGAAAGAATAGGCACTCGCGAGGTCCTATGTTTGGCATTGGG
AAAGAGTCTCCTTTCACCCACTTGGATGCGCACATCGAAAACTCATATTG
TTTCTTAAATGCTTTTATGTGTCTTTCTTTGTCTGAATACCAAGAAAGAG
TGCGGTCCTCACAGACTCCTTTTATTATATTTCGAAATCCTAGCTCACAA
TTTATGGACACAAATTGATGTTCTACTCAATTTAAATAATGCCCTCTTGT
TCACTGGGGACTTCTTATCCATTATAGATTTCAGAGACTCCATCGAAATG
GCATCCGCCGCGAAAAGCACAACATCGACCCCGGGCTCGGGTGTTTTTCT
TGCCTGGGCCATTCATGTCTATGCCTGGTTTCTGGGAAGCGTCGTCCTAG
TTCTCGCCAACGGcatccatctcttcctccctccttggtgTGTCATCCCC
ATTGCGGGTTGGGCAATCGGCGTTGGAATTCACGGGGCAGTTACGTACTT
CATAGTCGACAAACTTAACGGTAATTTCAAGCTTCTGGCTGACACTTACA
TCTTGAAATTTcaaggaggagacctGTCATTGTCGTGCAGGAGCCGATCT
CGGGGAAGACAGTGGAATGTGGAAGAACATTTGGTGAACGAACATTTGCA
AGGTATTTTGCATGACGGAGCgcgtaggaaggagggaagtaaaGAGAGTG
TTAGTGTGGGGCTCATCAGAGTCATACCCCCTTTTTTGTTCCATTATTGT
GTTTTTAACATCCGTTATGTGCTGGATGAGATAGACGGCCACTTAACGTC
GGTGTTCATAGAAGAAAGAATAGGCACTCGCGAGGTCCTATGTTTGGCAT
TGGGAAAGAGTCTCCTTTCACCCACTTGGATGCGCACATCGAAAACTCAT
ATTGTTTCTTAAATGCTTTTATGTGTCTTTCTTTGTCTGAATACCAAGAA
AGAGTGCGGTCCTCACAGACTCCTTTTATTATATTTCGAAATCCTAGCTC
ACAATTTATGGACACAAATTGATGTTCTACTCAATTTAAATAATGCCCTC
TTGTTCACTGGGGACTTCTTATCCATTATAGATTTCAGAGACTCCATCGA
AATGGCATCCGCCGCGAAAAGCACAACATCGACCCCGGGCTCGGGTGTTT
TTCTTGCCTGGGCCATTCATGTCTATGCCTGGTTTCTGGGAAGCGTCGTC
CTAGTTCTCGCCAACGGcatccatctcttcctccctccttggtgTGTCAT
CCCCATTGCGGGTTGGGCAATCGGCGTTGGAATTCACGGGGCAGTTACGT
ACTTCATAGTCGACAAACTTAACGGTAATTTCAAGCTTCTGGCTGACACT
TACATCTTGAAATTTcaaggaggagacctGTCATTGTCGTGCAGGAGCCG
ATCTCGGGGAAGACAGTGGAATGTGGAAGAACATTTGGTGAACGAACATT
TGCAAGGTATTTTGCATGACGGAGCgcgtaggaaggagggaagtaaaGAG
AGTGTTAGTGTGGGGCTCATCAGAGTCATACCCCCTTTTTTGTTCCATTA
TTGTGTTTTTAACATCCGTTATGTGCTGGATGAGATAGACGGCCACTTAA
CGTCGGTGTTCATAGAAGAAAGAATAGGCACTCGCGAGGTCCTATGTTTG
GCATTGGGAAAGAGTCTCCTTTCACCCACTTGGATGCGCACATCGAAAAC
TCATATTGTTTCTTAAATGCTTTTATGTGTCTTTCTTTGTCTGAATACCA
AGAAAGAGTGCGGTCCTCACAGACTCCTTTTATTATATTTCGAAATCCTA
GCTCACAATTTATGGACACAAATTGATGTTCTACTCAATTTAAATAATGC
CCTCTTGTTCACTGGGGACTTCTTATCCATTATAGATTTCAGAGACTCCA
TCGAAATGGCATCCGCCGCGAAAAGCACAACATCGACCCCGGGCTCGGGT
GTTTTTCTTGCCTGGGCCATTCATGTCTATGCCTGGTTTCTGGGAAGCGT
CGTCCTAGTTCTCGCCAACGGcatccatctcttcctccctccttggtgTG
TCATCCCCATTGCGGGTTGGGCAATCGGCGTTGGAATTCACGGGGCAGTT
ACGTACTTCATAGTCGACAAACTTAACGGTAATTTCAAGCTTCTGGCTGA
CACTTACATCTTGAAATTTcaaggaggagacctGTCATTGTCGTGCAGGA
GCCGATCTCGGGGAAGACAGTGGAATGTGGAAGAACATTTGGTGAACGAA
CATTTGCAAGGTATTTTGCATGACGGAGCgcgtaggaaggagggaagtaa
aGAGAGTGTTAGTGTGGGGCTCATCAGAGTCATACCCCCTTTTTTGTTCC
ATTATTGTGTTTTTAACATCCGTTATGTGCTGGATGAGATAGACGGCCAC
TTAACGTCGGTGTTCATAGAAGAAAGAATAGGCACTCGCGAGGTCCTATG
TTTGGCATTGGGAAAGAGTCTCCTTTCACCCACTTGGATGCGCACATCGA
AAACTCATATTGTTTCTTAA

Synonyms

Publications