rna2690, rna2690 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2690
Unique Name	rna2690
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1358
Alignment location	CM002459.1:969283..972993 +

Link to JBrowse

Properties


Property Name	Value
Product	pheromone processing carboxypeptidase
Orig transcript id	gnl\|cribi\|Naga_100008g60.7913.mrna
Orig protein id	gnl\|cribi\|Naga_100008g60.7913
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:969283..972993 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100008g60	gene2573	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2690	rna2690-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28021.1	cds2682	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:969283..972993+
coding sequence from alignment at CM002459.1:969283..972993+

mRNA sequence

>rna2690 ID=rna2690|Name=rna2690|organism=Nannochloropsis gaditana|type=mRNA|length=1358bp
GGGAAATTCATCCTCACGCTTTTATTTCTCGCACTTTTACGCATACCACG
CCAGATCTTGTGCGGTTTCTCGAAAATTGGTCAGGGAACCGGCCTCCTTC
TGGTCCACTGTTCACGCTCCAAGCGGCCTCGACAGCTAGCCGTGTGAGAT
GGAAACAACTTATACACATCAGCCGCCGCCGCCACCACCACCACCACCTT
CCGGTCCGTCTTCAGGCTTTGTACACAGTCAATACAGGCCCCCCTCCTCG
CTCAGACACATGGCGCCGCCCCCACCTTCCGGCCCGGGCGGGATGGCCAC
TACGCGGTCTGAGACCAAGCAGAAGCTTGCCTCCATCATCGACAACTTCT
CGCACCTGGACTTGGAGGTGAAGATGGGCACTCAGCAACGTCGGGAGAAA
GACGAGTCCCGTTTGCAAGAGCTCCGTGCCTCGGTCCTCAAAATTGACAA
GGCCCTCTCTGCAGAGATTAAAAGGGGTCTAGAGCGAAACAAGTTGCTGG
AAAAATGGGCAGAAGATCAGCTGGCAGCAACTGCCAATCAGTTTGCCGCT
CGACTGGAGGAGCGCACGCAAGAGGCACAAGACAGGCTGGGGGTACTGCA
GAGCCGCGTGGACTCGCTTGAAGAATATTTTACGCGCGAAAAGGAGCAGG
CCTTAAGCCTGGTAGAAGAGCGGGGCTCGGCGTTGAGTCAAGCCTTGGTG
GAGCTGCAGGAGGGAATGGATGCGGAAAGGCGAGACCGGCTCGAGCGTGA
GGGCCGGATGCTGCGCTTACTCGGCGACCAGGAGGAGGGAGTGGCGCTGC
GGTTCGAGCAGGAACGCACCTCACGGGAGGCCAAGATTGTGGAAGTACGA
CAGAGCTTGGACGAGTTTGTGCGGGCGCGGAAGAAAGTGGACGACCGGTT
CCAGGCTTTCGTGACGGAGGAGCTCGGGGCTCTGAAGGGGGAGTTGGCGC
GGGAGGCCGCCGCTCGGGCGAGGGAGGACGACGAAATCATCGAGGCACTA
GGCCGTTACACGAATAAGCTCCAACACAGCCTCAAGATCGTGAATGCGGC
GGCACTTTGCGGGGGGAGCGAAGGGGGGGGGGCGTTAATGGCGTCCTACG
CGTCGGGATCGGGGGAGGGGGGAGACGGGTATGTGCTCTGAAGGGGGGAC
ATTGAGCACTGGCGAGGTCAAATCTCTTTCAGCCTGGACACCTCTGATGG
ATGGCAGGTAAAGGAGAGTACAATTTGCGGGCGACAGCTCAAGAAAACGG
ACGGACATTGTAGCCTCTGGCAATCTTTTGCTTTTACATTTGCATTCAAT
ATTTAAACCCTTGCCCATCTGGAACACCGGTCTCTCGGCATTCGACCCTT
CCATGTCT

protein sequence of rna2690

>rna2690-protein ID=rna2690-protein|Name=rna2690|organism=Nannochloropsis gaditana|type=polypeptide|length=1038bp
MTIIPTLILLVLLANEGASVRRLDSTFSERDARRSLEAERLEAEGFRRLK
ERGLAADATSPDEHLVKQLPGLADDAFPTRQWAGLLTVDEAIEGKYFYWF
VEAASDAANKPLLIWLNGGPGCSSMDGFFLEHGPFKVLDDMSLSVHPYSW
HHVANVVYVDQPVGTGFSFTGRRQYCDEDDCINKHMYSFLQAFAKLHKDL
VLPTGTEIKTKPIFFSGESQAGHYIPSMVDYIMQQNPKAASPEVVLDVQG
MAIGNGWFDPPNQYDVSDYAHGAGLISEGQYHTLQKKRQECNSLLAQGKY
YTPICFALLDLVVGSTGTDQTGFVSFYDYRKYDHPGDRVFPPGHRTAEQY
MNLPQVKEALHAGESPLRFQECTDPPYDALKHQDGLGVTEQVGRILEGGV
RALFFNGAFDVICNHMGNEAALQALKWSGQDAFHEARRAVWIPEGGGAAG
EGKPGGFAKSSGALTYLVVAGAGHMVPLDVPVAALDMMTRFVNLKSFDDK
LQGIEMTVVPEDTVAASSATALNGAGETPTAPQTPTLRKVTASETESGVV
AFDVEGVDGQEQAVQSEELWYTVLVNPGGSILVPRQSDAGEEDADVAQPG
PLLLTDLKEGVDYTFQVLANNVVGASKPSEPARLVLGCGGPSGAGGPNVT
TCEHGLCGLDAVMDEKRCFCYAGWGGSGCQVAGPVVSDSTAAKGGNKKQD
SGAKEGVGNGRVTFVVDQSCTDAQVSEECALRFTVPLHLNAHASSEDKEG
GGKSSEWSVLDGPEETNAFEGMLRRDLAQILDVRKEQVELRALQPLKATA
HQLPGASGGSRLLEDTATATPPAETPSEEKGGPTPGVEGPMALTFDVLHP
LDPSGTVKRFTSVWAMPQGPLSFGLVTSNFDVNRNAEVLLLAQGTPLPGL
LDSSSSPDVILEKKTKRTATLSFAVILFLGAVVLMIVRYSRRKLGFGPGG
TGSGAQQRRRQEMQGGGGRRRMDSPEDQDLDHDIVLDGSGDDGTVVEIME
MRMPTGSQGSRGGSGLGGSGSILSRIVPDKDGADERLV

mRNA from alignment at CM002459.1:969283..972993+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2690 ID=rna2690|Name=rna2690|organism=Nannochloropsis gaditana|type=mRNA|length=3711bp|location=Sequence derived from alignment at CM002459.1:969283..972993+ (Nannochloropsis gaditana)
AACATCCGCACGACCAAAAATGCTAGTAATTCACCGCAATCCTCATTTAT
AAGTTATAACCATACCAACAGTTGACGAACACATCTGCATGGAAGCTGAG
TGGTGCTAAGGGCTCGGGTGTTCATTGTTAATTCCTTCACAAGAAACCCC
TAGGGCTTGGTTATTAGGCGCGTTATGACGATCATTCCCACCCTCATatt
gctggtgctgctggcTAATGAAGGTGCATCAGTGCGTCGTCTTGACAGCA
CATTTAGCGAAAGGGACGCGCGAAGGTCGTTGGAGGCAGAAAGGCTTGAG
GCAGAGGGCTTCCGGCGCCTGAAAGAGCGGGGATTAGCAGCTGATGCGAC
CTCACCAGACGAACACTTGGTAAAACAATTACCAGGCCTTGCGGACGATG
CATTTCCTACAAGGCAATGGGCTGGCTTACTGACCGTGGACGAAGCCATC
GAAGGGAAATACTTCTACTGGTTTGTGGAGGCGGCTTCGGACGCGGCGAA
CAAGCCCCTGTTAATATGGCTGAACGGCGGGCCGGGGTGTTCGAGTATGG
acggcttcttcctcgagcaTGGGCCCTTTAAAGTCCTCGACGATATGAGC
CTGAGCGTGCATCCGTACAGCTGGCATCATGTGGCCAACGTCGTGTACGT
AGATCAGCCTGTGGGCACGGGCTTTTCTTTCACAGGCCGGCGGCAGTATT
GCGATGAAGACGACTGCATCAACAAGCACATGTACTCCTTCCTTCAGGCA
TTCGCCAAGCTGCATAAGGACTTGGTCCTTCCCACCGGGACGGAGATCAA
GACCAAGCCTATCTTCTTCTCTGGAGAGTCCCAAGCGGGCCATTACATTC
CGAGCATGGTCGATTACATCATGCAGCAGAACCCGAAGGCAGCTTCACCG
GAGGTAGTTCTGGACGTGCAAGGCATGGCCATCGGCAACGGGTGGTTCGA
TCCCCCTAATCAGTACGACGTGAGCGATTACGCGCACGGCGCGGGTTTGA
TCTCGGAAGGACAATACCACACACTCCAAAAGAAGCGGCAAGAGTGCAAC
AGCTTGTTGGCTCAGGGCAAATACTACACCCCCATCTGCTTCGCACTTTT
GGATCTGGTTGTGGGTTCCACAGGCACGGACCAGACAGGTTTTGTTAGCT
TCTACGATTACCGGAAGTACGACCACCCCGGCGACCGCGTCTTTCCGCCC
GGGCACCGCACGGCCGAGCAGTACATGAACCTCCCGCAAGTCAAGGAGGC
TCTGCATGCGGGGGAATCCCCATTGCGTTTCCAGGAATGCACGGACCCAC
CCTACGATGCCTTGAAGCACCAGGACGGCCTGGGCGTGACCGAGCAGGTG
GGCCGCATCTTGGAAGGGGGCGTTCGCGCTCTATTTTTCAACGGAGCTTT
CGACGTCATTTGTAACCACATGGGAAACGAAGCAGCCCTGCAGGCATTAA
AGTGGTCGGGCCAGGATGCTTTCCACGAGGCACGACGAGCCGTTTGGATt
cccgaggggggaggggcggcgggagaggggaagccgGGAGGGTTTGCCAA
GAGCAGCGGGGCGCTGACGTACCTAGTGGTCGCAGGCGCCGGGCACATGG
TTCCCTTGGATGTTCCCGTGGCTGCCTTGGACATGATGACGCGGTTTGTG
AACCTGAAAAGCTTCGATGACAAATTGCAAGGGATTGAGATGACTGTCGT
TCCTGAAGACACCGTCGCCGCCTCATCCGCAACTGCTCTCAACGGAGCGG
GGGAAACTCCCACTGCTCCCCAAACACCCACACTCAGGAAAGTGACGGCG
TCTGAGACGGAGAGCGGTGTCGTTGCCTTcgacgtggaaggggtggacgG
CCAGGAGCAGGCCGTTCAGTCGGAGGAGCTCTGGTACACCGTCCTGGTCA
ATCCGGGCGGCTCAATTCTAGTCCCCCGCCAGTCAGACGccggcgaagag
gacgcagaCGTCGCGCAGCCTGGCCCCCTGCTACTGACCGatttgaagga
gggggtggattATACGTTTCAGGTCCTGGCCAACAATGTCGTGGGCGCAA
GCAAACCTTCGGAGCCCGCGAGGCTGGTCTTGGGATGCGGGGGGCCCTCA
GGGGCCGGCGGTCCGAACGTGACCACCTGTGAGCACGGGTTGTGCGGCCT
GGATGCCGTTATGGATGAAAAACGCTGCTTTTGCTACGCAGGTTGGGGGG
GCTCTGGATGTCAGGTCGCCGGCCCGGTGGTTTCGGACTCCACCGCggca
aaaggagggaacaaaAAACAGGATTCtggcgcgaaggaaggggttgggaa
TGGACGTGTGACCTTCGTTGTGGATCAGTCGTGCACAGATGCCCAAGTAT
CAGAAGAATGTGCCTTGCGCTTCACGGTCCCGCTCCACTTGAACGCCCAT
GCATCCtcagaggacaaggaagggggaggtaaAAGCAGTGAATGGAGCGT
GTTGGACGGACCGGAGGAGACGAACGCCTTTGAAGGCATGTTGCGTCGTG
ATTTGGCGCAAATTTTGGATGTTCGCAAGGAGCAAGTCGAGCTCCGGGCC
TTGCAACCCCTGAAGGCGACGGCTCACCAGTTGCCCGGTGCGTCGGGAGG
GTCTCGGCTTTTGGAGGacaccgccaccgccacgcctCCGGCAGAGACCC
CGTCTGAAGAGAAGGGCGGCCCCACgccgggcgtggagggcccGATGGCC
TTGACGTTCGACGTCCTGCACCCCCTCGACCCGTCCGGGACCGTCAAGCG
CTTCACGTCGGTATGGGCCATGCCGCAGGGTCCTCTGAGCTTCGGCCTCG
TCACTTCCAATTTTGATGTCAACCGAAACGCGGAGGTCCTGCTCTTGGCT
CAAGGTACGCCTTTGCCCGGGTTGCTGGACAGCAGTAGCAGTCCGGACGT
GATACTTGAGAAAAAAACGAAGCGCACGGCCACCCTGAGTTTtgccgtca
tcctcttcctcggtgCTGTCGTCTTAATGATTGTACGGTACTCCCGGCGG
AAACTAGGGTTTGGTCCCGGTGGGACAGGAAGTGGCGCACAgcaaaggag
aaggcaggagatgcaagggggcggaggcaggcggaggatggaCTCCCCCG
AGGACCAGGACCTAGACCACGACATTGTTTTGGACGGGAGTGGCGACGAC
GGGACTGTAGTGGAGATCATGGAGATGCGAATGCCGACGGGCTCCCAGGG
CTCGAGGGGGGGCTCGGGTTTGGGGGGCAGTGGCAGCATTTTGAGTCGAA
TCGTGCCCGACAAGGACGGCGCGGACGAGCGGCTTGTGTAACTCGCCTGG
GGGGACTCCGGAGAAAGGCACGATCACTGCGAGATTGGACTTGTTAGGCT
GTATGAGTAGGATGGGGCTGAGTAGGAAGAGTCTCGCTTCTCGCGGCGTA
AAAGTAAGACTGTATTGTATTCACTGCTCACGGTGTAAGAAACTGCTGGA
TATTCAGTGGGCGTCTATCAGTTAAAATGGCGTAGGGGAATAGAGTAACT
CATGTAGTCGAGAATTGCTTCCAGGCCTGATGTAAAATTGTGCCTTTACT
GCCATGCAAGCCGCGAGAACCCGAAGAAGGGTTGCGGATCAACACATTTA
TTTGACTTGGCCTCAGAACCTTGTGTCTGCTCCCACATTCACCAGTACAC
TTTGACAAGCGATGCGCGCATTCCCACTTTATAGAATGAGAAGCAGCACG
AGTGAGCACTC

Coding sequence (CDS) from alignment at CM002459.1:969283..972993+

>rna2690 ID=rna2690|Name=rna2690|organism=Nannochloropsis gaditana|type=CDS|length=3117bp|location=Sequence derived from alignment at CM002459.1:969283..972993+ (Nannochloropsis gaditana)
ATGACGATCATTCCCACCCTCATattgctggtgctgctggcTAATGAAGG
TGCATCAGTGCGTCGTCTTGACAGCACATTTAGCGAAAGGGACGCGCGAA
GGTCGTTGGAGGCAGAAAGGCTTGAGGCAGAGGGCTTCCGGCGCCTGAAA
GAGCGGGGATTAGCAGCTGATGCGACCTCACCAGACGAACACTTGGTAAA
ACAATTACCAGGCCTTGCGGACGATGCATTTCCTACAAGGCAATGGGCTG
GCTTACTGACCGTGGACGAAGCCATCGAAGGGAAATACTTCTACTGGTTT
GTGGAGGCGGCTTCGGACGCGGCGAACAAGCCCCTGTTAATATGGCTGAA
CGGCGGGCCGGGGTGTTCGAGTATGGacggcttcttcctcgagcaTGGGC
CCTTTAAAGTCCTCGACGATATGAGCCTGAGCGTGCATCCGTACAGCTGG
CATCATGTGGCCAACGTCGTGTACGTAGATCAGCCTGTGGGCACGGGCTT
TTCTTTCACAGGCCGGCGGCAGTATTGCGATGAAGACGACTGCATCAACA
AGCACATGTACTCCTTCCTTCAGGCATTCGCCAAGCTGCATAAGGACTTG
GTCCTTCCCACCGGGACGGAGATCAAGACCAAGCCTATCTTCTTCTCTGG
AGAGTCCCAAGCGGGCCATTACATTCCGAGCATGGTCGATTACATCATGC
AGCAGAACCCGAAGGCAGCTTCACCGGAGGTAGTTCTGGACGTGCAAGGC
ATGGCCATCGGCAACGGGTGGTTCGATCCCCCTAATCAGTACGACGTGAG
CGATTACGCGCACGGCGCGGGTTTGATCTCGGAAGGACAATACCACACAC
TCCAAAAGAAGCGGCAAGAGTGCAACAGCTTGTTGGCTCAGGGCAAATAC
TACACCCCCATCTGCTTCGCACTTTTGGATCTGGTTGTGGGTTCCACAGG
CACGGACCAGACAGGTTTTGTTAGCTTCTACGATTACCGGAAGTACGACC
ACCCCGGCGACCGCGTCTTTCCGCCCGGGCACCGCACGGCCGAGCAGTAC
ATGAACCTCCCGCAAGTCAAGGAGGCTCTGCATGCGGGGGAATCCCCATT
GCGTTTCCAGGAATGCACGGACCCACCCTACGATGCCTTGAAGCACCAGG
ACGGCCTGGGCGTGACCGAGCAGGTGGGCCGCATCTTGGAAGGGGGCGTT
CGCGCTCTATTTTTCAACGGAGCTTTCGACGTCATTTGTAACCACATGGG
AAACGAAGCAGCCCTGCAGGCATTAAAGTGGTCGGGCCAGGATGCTTTCC
ACGAGGCACGACGAGCCGTTTGGATtcccgaggggggaggggcggcggga
gaggggaagccgGGAGGGTTTGCCAAGAGCAGCGGGGCGCTGACGTACCT
AGTGGTCGCAGGCGCCGGGCACATGGTTCCCTTGGATGTTCCCGTGGCTG
CCTTGGACATGATGACGCGGTTTGTGAACCTGAAAAGCTTCGATGACAAA
TTGCAAGGGATTGAGATGACTGTCGTTCCTGAAGACACCGTCGCCGCCTC
ATCCGCAACTGCTCTCAACGGAGCGGGGGAAACTCCCACTGCTCCCCAAA
CACCCACACTCAGGAAAGTGACGGCGTCTGAGACGGAGAGCGGTGTCGTT
GCCTTcgacgtggaaggggtggacgGCCAGGAGCAGGCCGTTCAGTCGGA
GGAGCTCTGGTACACCGTCCTGGTCAATCCGGGCGGCTCAATTCTAGTCC
CCCGCCAGTCAGACGccggcgaagaggacgcagaCGTCGCGCAGCCTGGC
CCCCTGCTACTGACCGatttgaaggagggggtggattATACGTTTCAGGT
CCTGGCCAACAATGTCGTGGGCGCAAGCAAACCTTCGGAGCCCGCGAGGC
TGGTCTTGGGATGCGGGGGGCCCTCAGGGGCCGGCGGTCCGAACGTGACC
ACCTGTGAGCACGGGTTGTGCGGCCTGGATGCCGTTATGGATGAAAAACG
CTGCTTTTGCTACGCAGGTTGGGGGGGCTCTGGATGTCAGGTCGCCGGCC
CGGTGGTTTCGGACTCCACCGCggcaaaaggagggaacaaaAAACAGGAT
TCtggcgcgaaggaaggggttgggaaTGGACGTGTGACCTTCGTTGTGGA
TCAGTCGTGCACAGATGCCCAAGTATCAGAAGAATGTGCCTTGCGCTTCA
CGGTCCCGCTCCACTTGAACGCCCATGCATCCtcagaggacaaggaaggg
ggaggtaaAAGCAGTGAATGGAGCGTGTTGGACGGACCGGAGGAGACGAA
CGCCTTTGAAGGCATGTTGCGTCGTGATTTGGCGCAAATTTTGGATGTTC
GCAAGGAGCAAGTCGAGCTCCGGGCCTTGCAACCCCTGAAGGCGACGGCT
CACCAGTTGCCCGGTGCGTCGGGAGGGTCTCGGCTTTTGGAGGacaccgc
caccgccacgcctCCGGCAGAGACCCCGTCTGAAGAGAAGGGCGGCCCCA
CgccgggcgtggagggcccGATGGCCTTGACGTTCGACGTCCTGCACCCC
CTCGACCCGTCCGGGACCGTCAAGCGCTTCACGTCGGTATGGGCCATGCC
GCAGGGTCCTCTGAGCTTCGGCCTCGTCACTTCCAATTTTGATGTCAACC
GAAACGCGGAGGTCCTGCTCTTGGCTCAAGGTACGCCTTTGCCCGGGTTG
CTGGACAGCAGTAGCAGTCCGGACGTGATACTTGAGAAAAAAACGAAGCG
CACGGCCACCCTGAGTTTtgccgtcatcctcttcctcggtgCTGTCGTCT
TAATGATTGTACGGTACTCCCGGCGGAAACTAGGGTTTGGTCCCGGTGGG
ACAGGAAGTGGCGCACAgcaaaggagaaggcaggagatgcaagggggcgg
aggcaggcggaggatggaCTCCCCCGAGGACCAGGACCTAGACCACGACA
TTGTTTTGGACGGGAGTGGCGACGACGGGACTGTAGTGGAGATCATGGAG
ATGCGAATGCCGACGGGCTCCCAGGGCTCGAGGGGGGGCTCGGGTTTGGG
GGGCAGTGGCAGCATTTTGAGTCGAATCGTGCCCGACAAGGACGGCGCGG
ACGAGCGGCTTGTGTAA

Synonyms

Publications