rna2675, rna2675 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2675
Unique Name	rna2675
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1693
Alignment location	CM002459.1:938634..940614 -

Link to JBrowse

Properties


Property Name	Value
Product	cytochrome c oxidase assembly protein cox15-like protein
Orig transcript id	gnl\|cribi\|Naga_100008g44.7868.mrna
Orig protein id	gnl\|cribi\|Naga_100008g44.7868
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:938634..940614 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100008g44	gene2558	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2675	rna2675-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27976.1	cds2667	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:938634..940614-
coding sequence from alignment at CM002459.1:938634..940614-

mRNA sequence

>rna2675 ID=rna2675|Name=rna2675|organism=Nannochloropsis gaditana|type=mRNA|length=1693bp
CTCCCAATCCGCTTTAGTCCGGTTGGAATTTGTTGGCGGCAGAAACGCCG
AGGGGCGGGTCCTGATTGCTAGCCTGCTTATTGAACCGGTACATCGTCCA
AAAATCAAGGCCTTCAACTATCCGTCGTTCATAGTACAACTCCATCGTCA
GCATGCCTGCCGCACAAACGACACAGCTGATTGTGGCTTTCGTGTTTCTT
CAAGTAGTCGACGCCTTTGTCCTTCCCCCCCTACCTTCGTGTACGACCTC
GACTGCATGTGTCTCTTTTCCCCGAAACTCTTTGTGGAGGAGCGCGATGA
CAACCAGACGCTTCGTCGCCTTCCAAGACAGTAAACGGACGCATGAGAGC
AGTGAAGCTCTAGCTGTCAAGGAGAATGAAGAGGAAGAGGAACTGTTAGA
ATTAGAAGGCAAATACTACCAGTGGAAGCACGGGCCCGTACACTACGTGG
AGGCAGGCACCGAAGCGGCTACTGCTGATACGGCCGCCATTTTGCTCTTG
CCAGGGTTCGGTGTGTCCTCCAGCCACTACGAGCGGAACATCGGTCCTCT
GGCTGCATCAGGCTATCATGTCTTCGCCATAGACTACCTGGGGCAGGGCA
AAAGCTGGCCGGACAAGGACCCCGAGAAGGAGGACCAGCTGGTCTTGTCG
ATCGACACGTGGAGCGAGCAAATCATCTCCTTCATCCGCGACGTGATCGG
GAGGCCTGTCTACATATCTGGAAACTCATTAGGGGGATTCCTGGCCACGA
CTGTGGCGGCCCGGCACCACGAGTGGATCCGGGGCGTCGTGCTGCTGAAC
AGCACGCCCTTCTGGTCCTTTGCGCCCAACCGGAAGAAGATGCACCCCTG
GGTGAAAGAGGCCATCATCCCCTACGACGGCGTCCTCCCAGCCCCGCGAC
CCCTCTACGAGATCGGCTCCCGCTGGTACAACTCTTTGAGGAACAAAGAG
ACCGTCAAGGCCATGCTGGGCGCCGTGTATGCGGATGAGAAAGCCTGGGG
CGACCGGCTGGTGGAGCAGATTCTGGTCCCGACGGAGCACAAGCACGGCC
AGAGCGTCTTCACCTCCATCCTCTTCGCACCCAAACCCGAGCACACTTTC
GAGGAGACGCTCGCCCAGCTCCAGCAAAAGAATATCCCGCTCCTGCTCTT
GTACGGGAAAGAGGACCCGTGGATTTTCCCCTCTTGGGGCCAACGTGTCA
AGCGTCAAGTCTCGCTGGCCACCTACTACGAACTCAGCCCTGCCGGACAT
TGTCCTCACCACGAGACCCCCGTGGCAGTGAACGCCTTGATACTGGAGTG
GTTGCAGAAGCAGAACGGAGGGGCGGGTGGAGGAGAAGATGGGGGGATCG
GTCGAGGCAGCAAGGCGATGGGAAGCGGGGTGGAGGGAAAGGAAAGGGGG
GAGGGCCCAGGTGGAGACAGAGGAAGCATTAGAACGTATTTTGAGCCAGT
CACTGGGAAGCAAGTCACGGCTACCCTGATGGATGGTCGCCCCCGGGACA
CGATTGAGTGGTTGCTGGCAAACACTGTGTTTCGGTGACCCGCGATGGGT
CGGAGGGCGGCAGCGGGCCCGGCGCCTGGCGTTCACTGTCGCTGCTCCTG
CTTCTCAATGTACAATGATCGATGGAATTGCGTACAAACAGTACGACTTG
AAAACACTTTAATCAAGAAACATATCGCGACTGGTAATCAGAC

protein sequence of rna2675

>rna2675-protein ID=rna2675-protein|Name=rna2675|organism=Nannochloropsis gaditana|type=polypeptide|length=466bp
MLRVRGMIAPAAIRRGPLAGFWSRSPVLQPRRRLASTTFADASPLASSSA
TVSSSSSTSLRPLAYWLLGTGALVAGMVTVGGITRLTKSGLSMTDWRVQG
SLPPLNETEWQAEFARYKQFPEYQQRQSMTLDEFKFIFYWEWGHRMMGRF
IGLAYGLPFAYFAVRGRIPRSLYPRLATLFALGGGQGLIGWWMVKSGLEM
DPQQRKEIRVSPYRLTAHLGMAFTTFSLLIWTGMDLFHPPEHAVRAATAL
KTQLAAAARTGGPQASQELLTRVLRVRHLGIASAGLLGVTILSGAFVAGN
DAGRAYNTFPKMGEDFWIPPEVWEMEPKWRNFFENTALVQLDHRVLALST
AGLISATFLAARRGQVWRVLPAETRTALTATVGMAGAQVALGISTLLMYV
PVPLAAAHQAGSLVLLSLLSWSVHSLKFLKKLPVQSVQRSLPKSVGKGGA
EGASAAVEGGKMVAQL

mRNA from alignment at CM002459.1:938634..940614-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2675 ID=rna2675|Name=rna2675|organism=Nannochloropsis gaditana|type=mRNA|length=1981bp|location=Sequence derived from alignment at CM002459.1:938634..940614- (Nannochloropsis gaditana)
GCCGGGTGAGCACTTCCTCAGCTGCCTCTCCCCCCCAAACGCCACCTCAG
TACTCCTTTCTCTCACCGATGCTCCTCCACATTGTTCGCTACCAGGACCA
TGCTACGTGTCAGAGGTATGATTGCACCTGCCGCAATCCGGCGGGGCCCC
TTAGCTGGTTTTTGGTCTCGGTCGCCCGTGCTACAGGTAAACACCTAGGG
TTGGGTGGTATCTGAGCAATTCAGCAGCTTGATGGCACGCTTGCAATCCG
AGGATCACATTGACAAAATACGTTCTCGAGTACTCTATAGATATGTCTGT
TTTTGTGCTCCTGTCAGCCCTTTCATCTCTTGTGAAGTGTCTCAATCTGA
GAAGTCCCACACGTGGATCTCGTAGTTGCAGCCTCTCTGCACCGCCAGCG
CACCCCGTGATTCATGTCGCAAATTCCTTCCCACTGACACGCGCTGGTAT
GTACCTTACAGCCTCGCAGGCGTCTGGCCTCCACCACATTTGCGGACGCG
TCGCCTCTGGCCTCGTCCTCCGCCACAGTGTCATCCTCCTCAAGTACTTC
TCTACGACCTTTGGCCTACTGGCTTCTAGGCACCGGCGCTTTGGTGGCTG
GCATGGTCACAGTGGGCGGTATAACGCGCCTGACTAAGTCTGGCCTCTCC
ATGACCGACTGGAGGGTGCAGGGCTCCCTCCCTCCACTAAACGAGACGGA
GTGGCAGGCGGAATTCGCCCGCTACAAGCAGTTCCCTGAGTATCAGCAAC
GACAGAGCATGACTCTGGACGAGTTCAAGTTCATATTTTATTGGGAGTGG
GGCCACCGGATGATGGGCCGATTTATTGGCCTGGCGTACGGCCTGCCATT
TGCCTATTTCGCGGTCAGGGGCCGCATTCCACGCAGCCTCTACCCACGAC
TCGCCACGCTCTTCGCCCTGGGCGGGGGGCAGGGTCTGATCGGCTGGTGG
ATGGTGAAGAGCGGCTTGGAAATGGACCCGCAACAACGGAAGGAGATCCG
AGTCAGCCCCTACAGACTAACGGCCCATCTCGGCATGGCATTTACCACCT
TCTCCCTCTTGATCTGGACAGGGATGGACCTCTTCCACCCTCCAGAGCAC
GCCGTGCGAGCCGCTACGGCCCTCAAAACACAGCTTGCCGCGGCCGCACG
CACTGGGGGCCCACAGGCATCCCAGGAACTGCTCACTCGGGTCCTGCGTG
TCCGCCATTTGGGGATTGCGTCCGCTGGTCTTCTGGGCGTTACCATCCTC
TCCGGGGCCTTTGTGGCCGGCAACGACGCGGGAAGGGCCTACAACACCTT
TCCCAAGATGGGCGAGGATTTTTGGATCCCTCCAGAGGTGTGGGAGATGG
AGCCCAAGTGGCGGAATTTCTTCGAGAACACGGCCTTGGTGCAGCTCGAC
CATCGCGTTCTCGCGCTCTCCACGGCGGGCTTGATCTCAGCCACATTTCT
CGCGGCCCGACGGGGGCAGGTATGGAGGGTGCTGCCTGCTGAGACGAGGA
CGGCCCTGACCGCCACGGTGGGGATGGCGGGGGCGCAGGTGGCGCTGGGG
ATCTCGACGCTCTTGATGTACGTCCCCGTGCCCCTAGCGGCCGCACACCA
GGCGGGGTCTCTGGTCCTCCTCTCCCTTTTGTCGTGGTCAGTGCATTCCC
TTAAGTTCTTAAAAAAGCTGCCCGTGCAGTCGGTCCAGCGATCTTTACCA
AAAAGCGTTGGGAAAGGGGGGGCGGAAGGGGCCTCTGCGGCGGTGGAGGG
GGGAAAGATGGTGGCACAGCTGTGACCTTAAGGAGGGTGTTCAAATTCTA
TTGGGTAGGAGAGAAAGGTGTGAAGGCAAAGCAGAAGTTACCATAGCCCT
GCTGATTTGTGCATATGGGGAGATCCAGGGATATGTTGCCACTCTAAAGA
AGACAAGAGAGCGAGATAAAGCCTTCGATTGGAACCGACCGCTCCGAAAA
GGAATACCTGTTGACCACCAACCATGTCTGA

Coding sequence (CDS) from alignment at CM002459.1:938634..940614-

>rna2675 ID=rna2675|Name=rna2675|organism=Nannochloropsis gaditana|type=CDS|length=2802bp|location=Sequence derived from alignment at CM002459.1:938634..940614- (Nannochloropsis gaditana)
CCTCGCAGGCGTCTGGCCTCCACCACATTTGCGGACGCGTCGCCTCTGGC
CTCGTCCTCCGCCACAGTGTCATCCTCCTCAAGTACTTCTCTACGACCTT
TGGCCTACTGGCTTCTAGGCACCGGCGCTTTGGTGGCTGGCATGGTCACA
GTGGGCGGTATAACGCGCCTGACTAAGTCTGGCCTCTCCATGACCGACTG
GAGGGTGCAGGGCTCCCTCCCTCCACTAAACGAGACGGAGTGGCAGGCGG
AATTCGCCCGCTACAAGCAGTTCCCTGAGTATCAGCAACGACAGAGCATG
ACTCTGGACGAGTTCAAGTTCATATTTTATTGGGAGTGGGGCCACCGGAT
GATGGGCCGATTTATTGGCCTGGCGTACGGCCTGCCATTTGCCTATTTCG
CGGTCAGGGGCCGCATTCCACGCAGCCTCTACCCACGACTCGCCACGCTC
TTCGCCCTGGGCGGGGGGCAGGGTCTGATCGGCTGGTGGATGGTGAAGAG
CGGCTTGGAAATGGACCCGCAACAACGGAAGGAGATCCGAGTCAGCCCCT
ACAGACTAACGGCCCATCTCGGCATGGCATTTACCACCTTCTCCCTCTTG
ATCTGGACAGGGATGGACCTCTTCCACCCTCCAGAGCACGCCGTGCGAGC
CGCTACGGCCCTCAAAACACAGCTTGCCGCGGCCGCACGCACTGGGGGCC
CACAGGCATCCCAGGAACTGCTCACTCGGGTCCTGCGTGTCCGCCATTTG
GGGATTGCGTCCGCTGGTCTTCTGGGCGTTACCATCCTCTCCGGGGCCTT
TGTGGCCGGCAACGACGCGGGAAGGGCCTACAACACCTTTCCCAAGATGG
GCGAGGATTTTTGGATCCCTCCAGAGGTGTGGGAGATGGAGCCCAAGTGG
CGGAATTTCTTCGAGAACACGGCCTTGGTGCAGCTCGACCATCGCGTTCT
CGCGCTCTCCACGGCGGGCTTGATCTCAGCCACATTTCTCGCGGCCCGAC
GGGGGCAGGTATGGAGGGTGCTGCCTGCTGAGACGAGGACGGCCCTGACC
GCCACGGTGGGGATGGCGGGGGCGCAGGTGGCGCTGGGGATCTCGACGCT
CTTGATGTACGTCCCCGTGCCCCTAGCGGCCGCACACCAGGCGGGGTCTC
TGGTCCTCCTCTCCCTTTTGTCGTGGTCAGTGCATTCCCTTAAGTTCTTA
AAAAAGCTGCCCGTGCAGTCGGTCCAGCGATCTTTACCAAAAAGCGTTGG
GAAAGGGGGGGCGGAAGGGGCCTCTGCGGCGGTGGAGGGGGGAAAGATGG
TGGCACAGCTGTGAATGCTACGTGTCAGAGGTATGATTGCACCTGCCGCA
ATCCGGCGGGGCCCCTTAGCTGGTTTTTGGTCTCGGTCGCCCGTGCTACA
GCCTCGCAGGCGTCTGGCCTCCACCACATTTGCGGACGCGTCGCCTCTGG
CCTCGTCCTCCGCCACAGTGTCATCCTCCTCAAGTACTTCTCTACGACCT
TTGGCCTACTGGCTTCTAGGCACCGGCGCTTTGGTGGCTGGCATGGTCAC
AGTGGGCGGTATAACGCGCCTGACTAAGTCTGGCCTCTCCATGACCGACT
GGAGGGTGCAGGGCTCCCTCCCTCCACTAAACGAGACGGAGTGGCAGGCG
GAATTCGCCCGCTACAAGCAGTTCCCTGAGTATCAGCAACGACAGAGCAT
GACTCTGGACGAGTTCAAGTTCATATTTTATTGGGAGTGGGGCCACCGGA
TGATGGGCCGATTTATTGGCCTGGCGTACGGCCTGCCATTTGCCTATTTC
GCGGTCAGGGGCCGCATTCCACGCAGCCTCTACCCACGACTCGCCACGCT
CTTCGCCCTGGGCGGGGGGCAGGGTCTGATCGGCTGGTGGATGGTGAAGA
GCGGCTTGGAAATGGACCCGCAACAACGGAAGGAGATCCGAGTCAGCCCC
TACAGACTAACGGCCCATCTCGGCATGGCATTTACCACCTTCTCCCTCTT
GATCTGGACAGGGATGGACCTCTTCCACCCTCCAGAGCACGCCGTGCGAG
CCGCTACGGCCCTCAAAACACAGCTTGCCGCGGCCGCACGCACTGGGGGC
CCACAGGCATCCCAGGAACTGCTCACTCGGGTCCTGCGTGTCCGCCATTT
GGGGATTGCGTCCGCTGGTCTTCTGGGCGTTACCATCCTCTCCGGGGCCT
TTGTGGCCGGCAACGACGCGGGAAGGGCCTACAACACCTTTCCCAAGATG
GGCGAGGATTTTTGGATCCCTCCAGAGGTGTGGGAGATGGAGCCCAAGTG
GCGGAATTTCTTCGAGAACACGGCCTTGGTGCAGCTCGACCATCGCGTTC
TCGCGCTCTCCACGGCGGGCTTGATCTCAGCCACATTTCTCGCGGCCCGA
CGGGGGCAGGTATGGAGGGTGCTGCCTGCTGAGACGAGGACGGCCCTGAC
CGCCACGGTGGGGATGGCGGGGGCGCAGGTGGCGCTGGGGATCTCGACGC
TCTTGATGTACGTCCCCGTGCCCCTAGCGGCCGCACACCAGGCGGGGTCT
CTGGTCCTCCTCTCCCTTTTGTCGTGGTCAGTGCATTCCCTTAAGTTCTT
AAAAAAGCTGCCCGTGCAGTCGGTCCAGCGATCTTTACCAAAAAGCGTTG
GGAAAGGGGGGGCGGAAGGGGCCTCTGCGGCGGTGGAGGGGGGAAAGATG
GTGGCACAGCTGTGAATGCTACGTGTCAGAGGTATGATTGCACCTGCCGC
AATCCGGCGGGGCCCCTTAGCTGGTTTTTGGTCTCGGTCGCCCGTGCTAC
AG

Synonyms

Publications