rna2674, rna2674 (mRNA) Nannochloropsis gaditana

Overview
Namerna2674
Unique Namerna2674
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2279
Alignment locationCM002459.1:936679..938639 +

Link to JBrowse

Properties
Property NameValue
Productpheophytinase
Orig transcript idgnl|cribi|Naga_100008g43.7873.mrna
Orig protein idgnl|cribi|Naga_100008g43.7873
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:936679..938639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100008g43gene2557Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2674rna2674-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27981.1cds2666Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2674 ID=rna2674|Name=rna2674|organism=Nannochloropsis gaditana|type=mRNA|length=2279bp
CGCCAAGTCGGAAAAAAGCATTCGTACGACAAACCTGCTGGCAGAAGAAA
TGGCTTAAGTCACGTCCTGTTTTCAAATCCATCGGCACAACATAACAATA
ACTTTTATCCTTCGTAAACTGGCGTGCTACTCTTCAAGTTGCAACACAGG
ACGGGACATGAACACGTAGCAAGTCTCCCAGCAGGCTTTCTTCCTTCTCG
TTTTCATTCCAAGCGTCGAACGACCACCTGGCCCACGACGAGTACTTTGC
CACAGCATTACCTGATCTGAGACGGCTGGCGATGGCCAGTGCCGTGGACC
GCCGGGTTTTTGACCCCGATAAGAAAGCTTCCGTAAGGGTGCTGGACGAT
TCAGCCGCGACCGCCAGGCGCCTGGTGGAGTCGCGTATCACGGCTTTCAC
AGGAGAGTACGACTTTCTAAGCACGCTTTCGAAATCTCGTGTTGTACTTC
CAGGAGAAGGCGTGATGGAAGGGGAGGGTTTTCAGGCTTACCCGACCGTC
GAGCATGCGCTTCAAGCGTCAAAGAGCTCGGACCCTACGTACCGGCAATC
AATCCTGTCCTCCAAAGACGCCCTGGAAGCGAAGCGTCGCGGCGCAAAGG
CACCGAACGTGGACAAGCAGGCGTGGAAGCTTAAGTCCTTGGTGGTCATG
GAAGCCTTGCTGCGCGACAAGTTCCGCAGGCACAAGGGGCTTCGGCAGCA
GTTGATGAACACGGGTACCAAGCAGCTCGTGTACGAGAACGAGCACAACG
ACCAGTTCTGGGGAACATGCAAGGGCAAGGGCCACAATCACCTGGGGCAG
CTCCTCGAGCGAGTGCGCGCGGATGAGAAAGAGGGGCTTCTGGGTATATT
GCTGTGGGCCAAGCAGGTCTTCAACGCCACGTCCGACTCCAAGGTGCGCC
TTGACGTGAGCGTGACACGGGAGGGGCACCCTCTGCCCGAAGCAGATTTA
ACGCTGGAGCGTAAAGCCATCGTCACTTTTGGGAAGCTTGCGGAAAACGA
TGTTCCTGTCGCGCACCCGAGCACGAGCCGTTTCCACGCCATGGTGGTCG
TCTCCCAGCCGTACGGTCCCTTGCTCGTGGACCTGGAAGCGGCTAACGGG
AGCTTTCTCGATGAGCGTCGCCTGGAGCCTTTCAAAGGAGCGGCCCTCCA
CTCTGGGGTCTCGGAGGTCGCGTTGGGCACTTCCTCTCGGCGGTACACCT
TCACGTTCGACCTGGCCGCGGCCGCCAAACGCAGCCTGGCCTTGTACGAG
GTGTTGGAGGACCCCTTGAAGCTGGCGGCGGCACGCCCGGAACTGGGTGT
CTTCATGAACAATTTACCCAAAGATGTGACCGAGGAAATGGTGCGGGACT
TCGTGGCCGACTGCGGCACCGTCCTGTCGGTGGCGGTGCCCCGGCACCGG
ACGAGCCAAGAGCCCCGGGGTTTCGCCATTGTTATGTTCGGGACAGAGGC
AGCGGTCGTGTCGGCCCTAAAGCTCGACCGGGACCTGATGGGGGGCTCGG
AGGTTAGGGTGAGGCGGCGGAAGAAGGACGAGGAACATGGGCCGTCCGGG
GGGGTAGGTCCGAGGGAGGCAAGGGTGGGAAACACGGGCAGCCGGTCTCG
GGCCTCTGAGAGAGGGTCCCCGCGAAATGCTTCTCTGGCCATGTCCTCCG
ACCCTCTCTCTTCCACAGATTCGCCTTCCATGACCGACGCTGCGGCCACC
GCCTCGGCAAGGCTTCAGCAGCGCGCACGGGAGTCAAAAAGCGGGGAGGA
TGAGAGGCGCCGGGGGAGGGAGGGAGGTGGCCGCCGTCACTCACGGAGTG
GCAGCTCAAGCGCGGAGAGGAGAGAACGGAGGCGGGGGGGGCGTGAGGAA
GAGGTGGATGGTCGATGCGGGAGAGACCGTGCGGGCTGGCGCGAGGTGCG
CAGTGCCAGCCGGAGCAGAGAGCGGGTTAGAGGGAGGGAGAGGGAGAGGA
GCCACAGGCATCGGGCTGAGCATCGTGACAGGCACTATGGCTCCCCGCGA
AGAGAGAGAGGTCGCGATCGGAGCAGCGACAGAGTCTGGGAACCGTCTAG
GAGCGGTCGAGGCGAGAGAGGTTCTGACAGATCTCGGAGCCGGGAAAGGC
CTCGGCGGGGGGCCCGCAAGAGTCCTACTCCTCCGCGGAGACGCGCAGAG
AGGAGATCTTCATCTTAAGGAAAAGAAGAAGGTGCTATGTACGCCAAGAC
AACAGGAAGGGGAGACTTCTAAGCTGGACAAGTATTTCTTCGATAGGTGG
CGCCCTAAGGGCAAGAATGGCCTCCCTGG
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protein sequence of rna2674

>rna2674-protein ID=rna2674-protein|Name=rna2674|organism=Nannochloropsis gaditana|type=polypeptide|length=461bp
MPAAQTTQLIVAFVFLQVVDAFVLPPLPSCTTSTACVSFPRNSLWRSAMT
TRRFVAFQDSKRTHESSEALAVKENEEEEELLELEGKYYQWKHGPVHYVE
AGTEAATADTAAILLLPGFGVSSSHYERNIGPLAASGYHVFAIDYLGQGK
SWPDKDPEKEDQLVLSIDTWSEQIISFIRDVIGRPVYISGNSLGGFLATT
VAARHHEWIRGVVLLNSTPFWSFAPNRKKMHPWVKEAIIPYDGVLPAPRP
LYEIGSRWYNSLRNKETVKAMLGAVYADEKAWGDRLVEQILVPTEHKHGQ
SVFTSILFAPKPEHTFEETLAQLQQKNIPLLLLYGKEDPWIFPSWGQRVK
RQVSLATYYELSPAGHCPHHETPVAVNALILEWLQKQNGGAGGGEDGGIG
RGSKAMGSGVEGKERGEGPGGDRGSIRTYFEPVTGKQVTATLMDGRPRDT
IEWLLANTVFR
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mRNA from alignment at CM002459.1:936679..938639+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2674 ID=rna2674|Name=rna2674|organism=Nannochloropsis gaditana|type=mRNA|length=1961bp|location=Sequence derived from alignment at CM002459.1:936679..938639+ (Nannochloropsis gaditana)
CTCCCAATCCGCTTTAGTCCGGTTGGAATTTGTTGGCGGCAGAAACGCCG AGGGGCGGGTCCTGATTGCTAGCCTGCTTATTGAACCGGTACATCGTCCA AAAATCAAGGCCTTCAACTATCCGTCGTTCATAGTACAACTCCATCGTCA GCATGCCTGCCGCACAAACGACACAGCTGATTGTGGCTTTCGTGTTTCTT CAAGTAGTCGACGCCtttgtccttccccccctacctTCGTGTACGACCTC GACTGCATGTGTCTCTTTTCCCCGAAACTCTTTGTGGAGGAGCGCGATGA CAACCAGACGCTTCGTCGCCTTCCAAGACAGTAAACGGACGCATGAGAGC AGTGAAGCTCTAGCTGTCAAGGagaatgaagaggaagaggaactgTTAGA ATTAGAAGGCAAATACTACCAGTGGAAGCACGGGCCCGTACACTACGTGG AGGCAGGCACCGAAGCGGCTACTGCTGATACGGCCGCCATTTTGCTCTTG CCAGGTAAGAAATTTTGTTCAGTTGCAAATATCTCGCCTGCACGTCGTCG GTACACGACAGGGAATAGGAGGAATCACTGGCAGGCCTACATGCACTCTG AAGGCCGTGCATTCCCTTAGTTGCacctctccctgtcctccttctcgcag GGTTCGGTGTGTCCTCCAGCCACTACGAGCGGAACATCGGTCCTCTGGCT GCATCAGGCTATCATGTCTTCGCCATAGACTACCTGGGGCAGGGCAAAAG CTGGCCGGACAAGGAccccgagaaggaggaccaGCTGGTCTTGTCGATCG ACACGTGGAGCGAGCAAATCATCTCCTTCATCCGCGACGTGATCGGGAGG CCTGTCTACATATCTGGAAACTCATTAGGGGGATTCCTGGCCACGACTGT GGCGGCCCGGCACCACGAGTGGATCCGGGGCGTCGTGCTGCTGAACAGCA CGCCCTTCTGGTCCTTTGCGCCCAACCGGAAGAAGATGCACCCCTGGGTG AAAGAGGTAAGCGGTTGTAGGGGTCTATTCGGTCGAAAAAAGGGGCAGCC CGGGTTTTGCATGCTCGTGCAGGCAGGGGGTCCTGTGCGCCAAGATATTT CCCTGACATTCCTCCAAAACCCGGCCAGGCCATCATCCCCTACGACGgcg tcctcccagccccgcGACCCCTCTACGAGATCGGCTCCCGCTGGTACAAC TCTTTGAGGAACAAAGAGACCGTCAAGGCCATGCTGGGCGCCGTGTATGC GGATGAGAAAGCCTGGGGCGACCGGCTGGTGGAGCAGATTCTGGTCCCGA CGGAGCACAAGCACGGCCAGAGCGTCttcacctccatcctcttcgcaCCC AAACCCGAGCACACTTTCGAGGAGACGCTCGCCCAGCTCCAGCAAAAGAA TAtcccgctcctgctcttGTACGGGAAAGAGGACCCGTGGATTTTCCCCT CTTGGGGCCAACGTGTCAAGCGTCAAGTCTCGCTGGCCACCTACTACGAA CTCAGCCCTGCCGGACATTGTCCTCACCACGAGACCCCCGTGGCAGTGAA CGCCTTGATACTGGAGTGGTTGCAGAAGCAGaacggaggggcgggtggag gagaagatgggggGATCGGTCGAGGCAGCAAGGCGATGGGaagcggggtg gagggaaaggaaaggggggagggcccagGTGGAGACAGAGGAAGCATTAG AACGTATTTTGAGCCAGTCACTGGGAAGCAAGTCACGGCTACCCTGATGG ATGGTCGCCCCCGGGACACGATTGAGTGGTTGCTGGCAAACACTGTGTTT CGGTGACCCGCGATGGGTCGGAGGGCGGCAGCGGGCCCGGCGCCTGGCGT TCACTGTCgctgctcctgcttctcAATGTACAATGATCGATGGAATTGCG TACAAACAGTACGACTTGAAAACACTTTAATCAAGAAACATATCGCGACT GGTAATCAGAC
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Coding sequence (CDS) from alignment at CM002459.1:936679..938639+

>rna2674 ID=rna2674|Name=rna2674|organism=Nannochloropsis gaditana|type=CDS|length=4158bp|location=Sequence derived from alignment at CM002459.1:936679..938639+ (Nannochloropsis gaditana)
ATGCCTGCCGCACAAACGACACAGCTGATTGTGGCTTTCGTGTTTCTTCA
AGTAGTCGACGCCtttgtccttccccccctacctTCGTGTACGACCTCGA
CTGCATGTGTCTCTTTTCCCCGAAACTCTTTGTGGAGGAGCGCGATGACA
ACCAGACGCTTCGTCGCCTTCCAAGACAGTAAACGGACGCATGAGAGCAG
TGAAGCTCTAGCTGTCAAGGagaatgaagaggaagaggaactgTTAGAAT
TAGAAGGCAAATACTACCAGTGGAAGCACGGGCCCGTACACTACGTGGAG
GCAGGCACCGAAGCGGCTACTGCTGATACGGCCGCCATTTTGCTCTTGCC
AGGGTTCGGTGTGTCCTCCAGCCACTACGAGCGGAACATCGGTCCTCTGG
CTGCATCAGGCTATCATGTCTTCGCCATAGACTACCTGGGGCAGGGCAAA
AGCTGGCCGGACAAGGAccccgagaaggaggaccaGCTGGTCTTGTCGAT
CGACACGTGGAGCGAGCAAATCATCTCCTTCATCCGCGACGTGATCGGGA
GGCCTGTCTACATATCTGGAAACTCATTAGGGGGATTCCTGGCCACGACT
GTGGCGGCCCGGCACCACGAGTGGATCCGGGGCGTCGTGCTGCTGAACAG
CACGCCCTTCTGGTCCTTTGCGCCCAACCGGAAGAAGATGCACCCCTGGG
TGAAAGAGGCCATCATCCCCTACGACGgcgtcctcccagccccgcGACCC
CTCTACGAGATCGGCTCCCGCTGGTACAACTCTTTGAGGAACAAAGAGAC
CGTCAAGGCCATGCTGGGCGCCGTGTATGCGGATGAGAAAGCCTGGGGCG
ACCGGCTGGTGGAGCAGATTCTGGTCCCGACGGAGCACAAGCACGGCCAG
AGCGTCttcacctccatcctcttcgcaCCCAAACCCGAGCACACTTTCGA
GGAGACGCTCGCCCAGCTCCAGCAAAAGAATAtcccgctcctgctcttGT
ACGGGAAAGAGGACCCGTGGATTTTCCCCTCTTGGGGCCAACGTGTCAAG
CGTCAAGTCTCGCTGGCCACCTACTACGAACTCAGCCCTGCCGGACATTG
TCCTCACCACGAGACCCCCGTGGCAGTGAACGCCTTGATACTGGAGTGGT
TGCAGAAGCAGaacggaggggcgggtggaggagaagatgggggGATCGGT
CGAGGCAGCAAGGCGATGGGaagcggggtggagggaaaggaaagggggga
gggcccagGTGGAGACAGAGGAAGCATTAGAACGTATTTTGAGCCAGTCA
CTGGGAAGCAAGTCACGGCTACCCTGATGGATGGTCGCCCCCGGGACACG
ATTGAGTGGTTGCTGGCAAACACTGTGTTTCGGTGAATGCCTGCCGCACA
AACGACACAGCTGATTGTGGCTTTCGTGTTTCTTCAAGTAGTCGACGCCt
ttgtccttccccccctacctTCGTGTACGACCTCGACTGCATGTGTCTCT
TTTCCCCGAAACTCTTTGTGGAGGAGCGCGATGACAACCAGACGCTTCGT
CGCCTTCCAAGACAGTAAACGGACGCATGAGAGCAGTGAAGCTCTAGCTG
TCAAGGagaatgaagaggaagaggaactgTTAGAATTAGAAGGCAAATAC
TACCAGTGGAAGCACGGGCCCGTACACTACGTGGAGGCAGGCACCGAAGC
GGCTACTGCTGATACGGCCGCCATTTTGCTCTTGCCAGGGTTCGGTGTGT
CCTCCAGCCACTACGAGCGGAACATCGGTCCTCTGGCTGCATCAGGCTAT
CATGTCTTCGCCATAGACTACCTGGGGCAGGGCAAAAGCTGGCCGGACAA
GGAccccgagaaggaggaccaGCTGGTCTTGTCGATCGACACGTGGAGCG
AGCAAATCATCTCCTTCATCCGCGACGTGATCGGGAGGCCTGTCTACATA
TCTGGAAACTCATTAGGGGGATTCCTGGCCACGACTGTGGCGGCCCGGCA
CCACGAGTGGATCCGGGGCGTCGTGCTGCTGAACAGCACGCCCTTCTGGT
CCTTTGCGCCCAACCGGAAGAAGATGCACCCCTGGGTGAAAGAGGCCATC
ATCCCCTACGACGgcgtcctcccagccccgcGACCCCTCTACGAGATCGG
CTCCCGCTGGTACAACTCTTTGAGGAACAAAGAGACCGTCAAGGCCATGC
TGGGCGCCGTGTATGCGGATGAGAAAGCCTGGGGCGACCGGCTGGTGGAG
CAGATTCTGGTCCCGACGGAGCACAAGCACGGCCAGAGCGTCttcacctc
catcctcttcgcaCCCAAACCCGAGCACACTTTCGAGGAGACGCTCGCCC
AGCTCCAGCAAAAGAATAtcccgctcctgctcttGTACGGGAAAGAGGAC
CCGTGGATTTTCCCCTCTTGGGGCCAACGTGTCAAGCGTCAAGTCTCGCT
GGCCACCTACTACGAACTCAGCCCTGCCGGACATTGTCCTCACCACGAGA
CCCCCGTGGCAGTGAACGCCTTGATACTGGAGTGGTTGCAGAAGCAGaac
ggaggggcgggtggaggagaagatgggggGATCGGTCGAGGCAGCAAGGC
GATGGGaagcggggtggagggaaaggaaaggggggagggcccagGTGGAG
ACAGAGGAAGCATTAGAACGTATTTTGAGCCAGTCACTGGGAAGCAAGTC
ACGGCTACCCTGATGGATGGTCGCCCCCGGGACACGATTGAGTGGTTGCT
GGCAAACACTGTGTTTCGGTGAATGCCTGCCGCACAAACGACACAGCTGA
TTGTGGCTTTCGTGTTTCTTCAAGTAGTCGACGCCtttgtccttcccccc
ctacctTCGTGTACGACCTCGACTGCATGTGTCTCTTTTCCCCGAAACTC
TTTGTGGAGGAGCGCGATGACAACCAGACGCTTCGTCGCCTTCCAAGACA
GTAAACGGACGCATGAGAGCAGTGAAGCTCTAGCTGTCAAGGagaatgaa
gaggaagaggaactgTTAGAATTAGAAGGCAAATACTACCAGTGGAAGCA
CGGGCCCGTACACTACGTGGAGGCAGGCACCGAAGCGGCTACTGCTGATA
CGGCCGCCATTTTGCTCTTGCCAGGGTTCGGTGTGTCCTCCAGCCACTAC
GAGCGGAACATCGGTCCTCTGGCTGCATCAGGCTATCATGTCTTCGCCAT
AGACTACCTGGGGCAGGGCAAAAGCTGGCCGGACAAGGAccccgagaagg
aggaccaGCTGGTCTTGTCGATCGACACGTGGAGCGAGCAAATCATCTCC
TTCATCCGCGACGTGATCGGGAGGCCTGTCTACATATCTGGAAACTCATT
AGGGGGATTCCTGGCCACGACTGTGGCGGCCCGGCACCACGAGTGGATCC
GGGGCGTCGTGCTGCTGAACAGCACGCCCTTCTGGTCCTTTGCGCCCAAC
CGGAAGAAGATGCACCCCTGGGTGAAAGAGGCCATCATCCCCTACGACGg
cgtcctcccagccccgcGACCCCTCTACGAGATCGGCTCCCGCTGGTACA
ACTCTTTGAGGAACAAAGAGACCGTCAAGGCCATGCTGGGCGCCGTGTAT
GCGGATGAGAAAGCCTGGGGCGACCGGCTGGTGGAGCAGATTCTGGTCCC
GACGGAGCACAAGCACGGCCAGAGCGTCttcacctccatcctcttcgcaC
CCAAACCCGAGCACACTTTCGAGGAGACGCTCGCCCAGCTCCAGCAAAAG
AATAtcccgctcctgctcttGTACGGGAAAGAGGACCCGTGGATTTTCCC
CTCTTGGGGCCAACGTGTCAAGCGTCAAGTCTCGCTGGCCACCTACTACG
AACTCAGCCCTGCCGGACATTGTCCTCACCACGAGACCCCCGTGGCAGTG
AACGCCTTGATACTGGAGTGGTTGCAGAAGCAGaacggaggggcgggtgg
aggagaagatgggggGATCGGTCGAGGCAGCAAGGCGATGGGaagcgggg
tggagggaaaggaaaggggggagggcccagGTGGAGACAGAGGAAGCATT
AGAACGTATTTTGAGCCAGTCACTGGGAAGCAAGTCACGGCTACCCTGAT
GGATGGTCGCCCCCGGGACACGATTGAGTGGTTGCTGGCAAACACTGTGT
TTCGGTGA
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Synonyms
Publications