rna2665, rna2665 (mRNA) Nannochloropsis gaditana

Overview
Namerna2665
Unique Namerna2665
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1125
Alignment locationCM002459.1:912950..914543 +

Link to JBrowse

Properties
Property NameValue
Productpeptidyl-prolyl cis-trans isomerase
Orig transcript idgnl|cribi|Naga_100008g32.7838.mrna
Orig protein idgnl|cribi|Naga_100008g32.7838
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:912950..914543 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100008g32gene2548Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2665rna2665-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27946.1cds2657Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2665 ID=rna2665|Name=rna2665|organism=Nannochloropsis gaditana|type=mRNA|length=1125bp
ATGCAAGGGGCACGATTGTTACCGACGTTTGCCAGGGGGCATCGTCGGTG
TGCGACGCTGGTCCGTCTTTTTTCTGCGTCCACTCAAGAGCCACAGACGA
GAGCTCTGACTCGTCGGGACTGTCGCCCGCCTGTGGTCAGAGCGTTCAAG
GCATTTTCTACCGCCGACCATTTCGATCGCTCAAAAACAGAAGAAGAAAG
CTCAAATGCAGCCTCTTCAGCGTCCACATCCACATTTCAAGACCCACGTC
AGGAGATCTTGGCCGCTGCCCTGCCTCTGGTGCCGACGCACGGGTGGACT
GAAGAGGCCTTGGCTGCGGGTGCGGCCTCCTTAGGCTTCCCTGCAGTGGC
GCATGGCATGTTTGCGCGTGGGGGGATCGAGCTAGTGGAACATGTGCTAG
CCCAAATTGATTCCGCATGGCTAGCAGAGCTTGAAGCCCGCAAGGAGGAA
CTTGCCGCCTTCCCCTCGTCACGAGAGCGCTTGGAAAAGGCGATACAATG
CCGCTTACGCTTGATCGCACCACACCTCGCCCAATGGCCGCAAGCGATGG
CGCTAAGTTTGTCACCGCAGCATCTGGAGACGACCGCACGGGGCCTGGCG
GAAGTAGCGGATGAGTTGTGCGTGATATCAGGCGAGGACTCTGTCAATGT
TCCAAATTGGTACGCTCATCGTGCCACTGTCTGCTCGGTGTACATCGCCA
CCGAGCTATTTTTCCTAACAGACTACTCTGACGATTATAGAGACACATGG
GCTTTTTTGAATCGACGCCTCCAGGACGTCGAGGCCCTCTCCCACGCGCC
GCGGAACGTGCAGGAAGGTGTGTTGGCATTTCAAACCGCTGCCTCAGCCA
TGGCGTCGGCGCTTTCCTCGCTGACACAGCCAGCCGTGGTGGGAGTACTT
GAGAAAGTACCTCTAACGGGCACGGTAGTCACGGTGGTGCATGCAGTACT
TGCCAATTTGGCGGCGATGGCACCGACCACCCCTTCCCCCTTTGATCAGG
AGGAGAGTAAAAAGAGAGAGACAGAAACGTCGACGGAATTCGGTCCTTCC
ACAGAGATAGATCCGTACGCGGGAAAAATAGAGGACAATGAAATCGCGAA
TGATGCGAAGAAAAAGTCTCCGTAA
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protein sequence of rna2665

>rna2665-protein ID=rna2665-protein|Name=rna2665|organism=Nannochloropsis gaditana|type=polypeptide|length=362bp
MKQNISTTARVLCVFFATIDIVECFHAISSGSAAKSIGNIVLHSSASSTP
SFSSASPTSASSLFSPPSSQSSSSSSSSFSSSVASSSSFAQSDRRQALAS
LTSSIAIATCAAVITYTPLSPSNAATKNAKRLPYPAEITAKAFFDVRITG
FVTGEEKATSEDFVGRMVFGLFGKAAPIVVGEFIKYTKAPYGGNFPSYAF
SSLTKRTPGVSVEAGRIKGLKEIEIAGTREYEYGDQLLGAKGMDEPTLAL
KHDRRGLLTKSSTQDAVDPVFEMTLGPQPALDNGDSIVFGILLEGQEALD
AMEKVPIYTYESAGEQPEALNSLFTNQKKLFLSMAKSLNDERAVNRQGSF
LKRVEVLNVGLL
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mRNA from alignment at CM002459.1:912950..914543+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2665 ID=rna2665|Name=rna2665|organism=Nannochloropsis gaditana|type=mRNA|length=1594bp|location=Sequence derived from alignment at CM002459.1:912950..914543+ (Nannochloropsis gaditana)
acagcTAGTTAGCGAGCTCCGAGGTTGCAAGCGTGAGCTTCTGGTTGACC
CTGTTTTGTAGTGTACAACGACGCCTAAAAATGCTTTACAACAAGAGTGG
CTTTGTTGAGGCTGTGTCAATACACTTTTGATTTTTCAAGGTGTTATTTG
GCTGTCACTTACTTTCCAGGCGGAAAAGGGCACTGACCTCTGTACAGCTT
CAATTGCGGTTCCAACGACAGAAGATGAAGCAGAACATTTCAACAACTGC
GAGGGTGCTCTGCGTATTCTTCGCGACAATCGACATTGTCGAATGCTTTC
ATGCCATATCATCCGGCTCCGCAGCCAAAAGCATTGGAAATATTGTGCTA
CACTCGTCTGCatcctccactccttccttctcctccgcctcgcccacttc
CGCAAGTTCCTtattttccccgccctcctcccaatcctcctcctcatctt
cttcttcgttctcttcctccgtcgcctcttcatcttccttcgCGCAGTCC
GACCGCCGCCAAGCACTTGCCAGCTTAACCTCCTCTATAGCTATCGCAAC
ATGCGCTGCAGTCATTACATAtacccctctttctccttccaatGCCGCTA
CAAAAAATGCCAAAAGGCTACCGTACCCCGCAGAAATAACGGCAAAAGCA
TTTTTCGATGTGCGTATAACGGGCTTCGTAAccggagaggaaaaagccac
GAGCGAGGATTTCGTAGGACGCATGGTTTTTGGTTTGTTCGGTAAGGCAG
CCCCAATAGTGGTTGGGGAATTCATAAAATACACAAAAGCTCCCTATGGC
GGAAACTTTCCAAGCTATGCATTCTCAAGCCTCACGAAGCGCACGCCAGG
CGTATCTGTGGAAGCTGGACGCATCAAAGGCCTGAAAGAGATCGAAATTG
CAGGGACGCGAGAATACGAGTACGGAGACCAGCTGCTGGGTGCTAAGGGC
ATGGATGAGCCCACGCTAGCCCTGAAGCACGATCGAAGAGGCTTATTGAC
GAAGAGTAGCACCCAGGATGCCGTGGATCCAGTTTTTGAAATGACTTTGG
GCCCCCAACCAGCTTTGGACAACGGGGACTCAATTGTCTTCGGGATCCTC
ttggagggacaggaggcgcTGGATGCGATGGAAAAGGTGCGCTTATGTCG
TTGCTTTCCTCGcattctctcctcccttttttacTCTTTTCTAGTGTCTC
GATCATAGCAAGCCCCCCAGTCACGTTCCTAAACGACTTGTTGCtcatgc
tctcctcctctgccaaaCATGCTTGCGAACCACTCGTCCCAGGTCCCAAT
ATACACCTACGAGAGCGCAGGGGAACAGCCAGAGGCCTTGAACAGCCTCT
TCACAAACCAGAAGAAGCTTTTCCTGTCCATGGCCAAGTCACTCAATGAC
GAACGGGCTGTGAACCGGCAAGGGTCCTTCttgaagagggtggaggtcTT
GAATGTGGGCCTCCTGTGACCGGGACGGAGCCACGTAGGGCAAGAGCAGA
AAGCAAGAGTACACTACCCTCACAAACAAGGCCCGTGCCTGACGCTTTCC
GGCGTGCTTTGTTGGTTATTTTCTTCGCTCGATCTTTACATGCT
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Coding sequence (CDS) from alignment at CM002459.1:912950..914543+

>rna2665 ID=rna2665|Name=rna2665|organism=Nannochloropsis gaditana|type=CDS|length=2178bp|location=Sequence derived from alignment at CM002459.1:912950..914543+ (Nannochloropsis gaditana)
ATGAAGCAGAACATTTCAACAACTGCGAGGGTGCTCTGCGTATTCTTCGC
GACAATCGACATTGTCGAATGCTTTCATGCCATATCATCCGGCTCCGCAG
CCAAAAGCATTGGAAATATTGTGCTACACTCGTCTGCatcctccactcct
tccttctcctccgcctcgcccacttcCGCAAGTTCCTtattttccccgcc
ctcctcccaatcctcctcctcatcttcttcttcgttctcttcctccgtcg
cctcttcatcttccttcgCGCAGTCCGACCGCCGCCAAGCACTTGCCAGC
TTAACCTCCTCTATAGCTATCGCAACATGCGCTGCAGTCATTACATAtac
ccctctttctccttccaatGCCGCTACAAAAAATGCCAAAAGGCTACCGT
ACCCCGCAGAAATAACGGCAAAAGCATTTTTCGATGTGCGTATAACGGGC
TTCGTAAccggagaggaaaaagccacGAGCGAGGATTTCGTAGGACGCAT
GGTTTTTGGTTTGTTCGGTAAGGCAGCCCCAATAGTGGTTGGGGAATTCA
TAAAATACACAAAAGCTCCCTATGGCGGAAACTTTCCAAGCTATGCATTC
TCAAGCCTCACGAAGCGCACGCCAGGCGTATCTGTGGAAGCTGGACGCAT
CAAAGGCCTGAAAGAGATCGAAATTGCAGGGACGCGAGAATACGAGTACG
GAGACCAGCTGCTGGGTGCTAAGGGCATGGATGAGCCCACGCTAGCCCTG
AAGCACGATCGAAGAGGCTTATTGACGAAGAGTAGCACCCAGGATGCCGT
GGATCCAGTTTTTGAAATGACTTTGGGCCCCCAACCAGCTTTGGACAACG
GGGACTCAATTGTCTTCGGGATCCTCttggagggacaggaggcgcTGGAT
GCGATGGAAAAGGTCCCAATATACACCTACGAGAGCGCAGGGGAACAGCC
AGAGGCCTTGAACAGCCTCTTCACAAACCAGAAGAAGCTTTTCCTGTCCA
TGGCCAAGTCACTCAATGACGAACGGGCTGTGAACCGGCAAGGGTCCTTC
ttgaagagggtggaggtcTTGAATGTGGGCCTCCTGTGAATGAAGCAGAA
CATTTCAACAACTGCGAGGGTGCTCTGCGTATTCTTCGCGACAATCGACA
TTGTCGAATGCTTTCATGCCATATCATCCGGCTCCGCAGCCAAAAGCATT
GGAAATATTGTGCTACACTCGTCTGCatcctccactccttccttctcctc
cgcctcgcccacttcCGCAAGTTCCTtattttccccgccctcctcccaat
cctcctcctcatcttcttcttcgttctcttcctccgtcgcctcttcatct
tccttcgCGCAGTCCGACCGCCGCCAAGCACTTGCCAGCTTAACCTCCTC
TATAGCTATCGCAACATGCGCTGCAGTCATTACATAtacccctctttctc
cttccaatGCCGCTACAAAAAATGCCAAAAGGCTACCGTACCCCGCAGAA
ATAACGGCAAAAGCATTTTTCGATGTGCGTATAACGGGCTTCGTAAccgg
agaggaaaaagccacGAGCGAGGATTTCGTAGGACGCATGGTTTTTGGTT
TGTTCGGTAAGGCAGCCCCAATAGTGGTTGGGGAATTCATAAAATACACA
AAAGCTCCCTATGGCGGAAACTTTCCAAGCTATGCATTCTCAAGCCTCAC
GAAGCGCACGCCAGGCGTATCTGTGGAAGCTGGACGCATCAAAGGCCTGA
AAGAGATCGAAATTGCAGGGACGCGAGAATACGAGTACGGAGACCAGCTG
CTGGGTGCTAAGGGCATGGATGAGCCCACGCTAGCCCTGAAGCACGATCG
AAGAGGCTTATTGACGAAGAGTAGCACCCAGGATGCCGTGGATCCAGTTT
TTGAAATGACTTTGGGCCCCCAACCAGCTTTGGACAACGGGGACTCAATT
GTCTTCGGGATCCTCttggagggacaggaggcgcTGGATGCGATGGAAAA
GGTCCCAATATACACCTACGAGAGCGCAGGGGAACAGCCAGAGGCCTTGA
ACAGCCTCTTCACAAACCAGAAGAAGCTTTTCCTGTCCATGGCCAAGTCA
CTCAATGACGAACGGGCTGTGAACCGGCAAGGGTCCTTCttgaagagggt
ggaggtcTTGAATGTGGGCCTCCTGTGA
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Synonyms
Publications