rna2661, rna2661 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2661
Unique Name	rna2661
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1244
Alignment location	CM002459.1:902443..904282 +

Link to JBrowse

Properties


Property Name	Value
Product	eukaryotic translation initiation factor 1a
Orig transcript id	gnl\|cribi\|Naga_100008g27.7855.mrna
Orig protein id	gnl\|cribi\|Naga_100008g27.7855
Gene	EIF1
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:902443..904282 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EIF1	gene2544	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2661	rna2661-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27963.1	cds2653	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:902443..904282+
coding sequence from alignment at CM002459.1:902443..904282+

mRNA sequence

>rna2661 ID=rna2661|Name=rna2661|organism=Nannochloropsis gaditana|type=mRNA|length=1244bp
TTCTGGTCTGGGTGCATGGGTGTCTTCGTTGATGCAAAGAAATGCATGTA
ATGTTTTAAGGGCGCAAGGACGCTGTGTGGTCCTTTCATACCCAACTTTG
CGTGCTGTTCGATCACTTCTCCGTTCACCCAGAATGCCCTCCACCCCTCT
GATTTTTTGCTTTCACAGGAAGGCTCCCTTTGTGGTCACTCCTTCTTACG
TCGCCCTTACACATTCGTCAACAAAGCTTTCTGCTCGGGTAGGTTTGTTT
AATAGGAAGAGGTCTTTGAGGTAGGAAATTACAGGCATACCCAGAAACAC
ATGACTGGGGAAAAAAAAGACAAATCCCGAAAAACTTATGCACCTCATCC
TTTCAATCGGATGGAGACACGTGTGGCACTTAATCAATTGTGTTTCTCTT
TCGATTCGCTTTCTTGGTATCCTTAACTCAATACATTTCATCATTTTAAA
GGTAACCCTCTCCTTGCCGTAAGGAAGCAGGGTTGATCGGGTTGTGCAGA
AAGTGTGGTAACGGCAGCGCACAACTATGCCCAAGAATAAAGGAAAGGGT
GGCAAAAATCGTCGCCGCGGGAAAAATGAGAATGAGGAGACGAAGCGAGA
CCTACTTTTTAAGGAGGAGGGCCAAGAGTATGGACAAGTGATAAAGATGC
TGGGCAACGGCCGGTGCGAGGTGTACTGCTTTGACGGGAAGAACCGTTTG
GCACACATCCGGGGGAAGATGCGGAAGAAAGTTTGGGTGTCGGCGGGCGA
CATCGTCCTCTTGGGGATGCGCGACTACCAGGAGGACAAAGTGGATATCA
TCCACAAGTACAACGCGGATGAGGCAAGGAATCTGAAGGCATTTGGAGAG
CTCCCGGAGACGGCGAAAATCAATGAGACAGCAATAGACTTGACCTTGGA
GGGCGGGTCCGACTCAGAGGATGAGATCGGAGTGGATTTCGACGAGATTT
AGGCAATGTACCGATCAAAGCTGGTTTGGAGGCATGCATATCGCAAGCAC
GCGGAGGTCGTGCATACTTGTCGTGGAAGCTTGATATCTCGGTGCTTCAA
CAGGATCGCCCCCTCAAAAATCGCGAGAAAAGTGAAAGGCGGAAAGGAAC
GGGATACCTGAGCCTTATCTTTGCAACAATAACCGAAAAGGAAAGGAATG
GAACGGAGCAGCAATAAAGTGGAGGATGTGTGTAATGATTGGGCGGGGGG
GCAGGGTTCAGATGAAGAAGAAAAAAGGAGTACCCAAAAAATCC

protein sequence of rna2661

>rna2661-protein ID=rna2661-protein|Name=rna2661|organism=Nannochloropsis gaditana|type=polypeptide|length=141bp
MPKNKGKGGKNRRRGKNENEETKRDLLFKEEGQEYGQVIKMLGNGRCEVY
CFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEA
RNLKAFGELPETAKINETAIDLTLEGGSDSEDEIGVDFDEI

mRNA from alignment at CM002459.1:902443..904282+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2661 ID=rna2661|Name=rna2661|organism=Nannochloropsis gaditana|type=mRNA|length=1840bp|location=Sequence derived from alignment at CM002459.1:902443..904282+ (Nannochloropsis gaditana)
TGTGGTCCTTTCATACCCAACTTTGCGTGCTGTTCGATCACTTCTCCGTT
CACCCAGAatgccctccacccctctgaTTTTTTGCTTTCACAGGAAGGCT
CCCTTTGTGGTCACTCCTTCTTACGTCGCCCTTACACATTCGTCAACAAA
GCTTTCTGCTCGGGTAGGTTTGTTTAATAGGAAGAGGTCTTTGAGGTAGG
AAATTACAGGCATACCCAGAAACACATGactggggaaaaaaaagacaaat
CCCGAAAAACTTATGCACCTCATCCTTTCAATCGGATGGAGACACGTGTG
GCACTTAATCAATTGTGTTTCTCTTTCGATTCGCTTTCTTGGTATCCTTA
ACTCAATACATTTCATCATTTTAAAGGTAaccctctccttgccgtAAGGA
AGCAGGGTTGATCGGGTTGTGCAGAAAGTGTGGTAACGGCAGCGCACAAC
TATGCCCAAGAataaaggaaagggtggcAAAAATCGTCGCCGCGGGAAAA
ATGAGAATGAGGAGACGAAGCGAGACCTACTTTttaaggaggagggccaa
ggtACGTGACAAGCATGTTCTATGAAAGCGAGATGTGAGGGCATCAACTT
CGGGCGAGATGCCAGCCTTGGGACTCAGAGAGGCTCACAGACGAGGGAAT
AGAGGAATTTAATAATAATATTATTCACTGATCCAACtgccttctttttt
tcgcgCGCGACATAGAGTATGGACAAGTGATAAAGATGCTGGGCAACGGC
CGGTGCGAGGTGTACTGCTTTGACGGGAAGAACCGTTTGGCACACATCCG
GGGGAAGATGCGGAAGAAAGTTTGGGTGTCGGCGGTGAGTCAAATATATG
catatatatacatacaAGCGTCTGTCGTTGgacgcagagggagggatggg
tccgcgaggaggaggggaccggGGGCGTGAGAGtgaggggacggagggtg
gCGCGTGGGAGGATGTGGGAGTcgtgagggggaggcatcGAAGACCGGGA
GGTTGTAGGTAGCGTGGCTATGATCTCCTGGACTGACCGCCTTCGGGCCT
CCATCTACGGGACAGGGCGACATCGTCCTCTTGGGGATGCGCGACTACCA
GGAGGACAAAGTGGATATCATCCACAAGTACAACGCGGATGAGGCAAGGA
ATCTGAAGGCATTTGGAGAGCTCCCGGAGACGGGTGAGAGAAGAGGACTG
GGACAAGCCATCCTTTTTCTAGAAAGAGCATCGCTGGGTTGGGGCTGGGG
GCAGACAGATTCGGCGCGGATGTTGTTATCGCGCTATTTTGACCTATCCA
TTCATCCGTCTTCACACCCACAATCACTTGCTTTTCAGCGAAAATCAATG
AGACAGCAATAGACTTGACCTTGGAGGGCGGGTCCGACTCAGAGGATGAG
ATCGGAGTGGATTTCGACGAGGTACCTTTTGGAGGCTTGTTGCTCGTGCC
TTTGAGTCGGTCTGGCAGACACTGAGAGGCCTACAGTGTGAGCCTCGATC
CAAACTTACAAACCTCATTTTCCTTGCTCTTTCACCTGGCAGATTTAGGC
AATGTACCGATCAAAGCTGGTTTGGAGGCATGCATATCGCAAGCACGCGG
AGGTCGTGCATACTTGTCGTGGAAGCTTGATATCTCGGTGCTTCAACAGG
ATCGCCCCCTCAAAAATCGCGAGAAAAGTGAAAGGCGGAAAGGAACGGGA
TACCTGAGCCTTATCTTTGCAACAATAAccgaaaaggaaaggaatggaac
GGAGCAGCAATAAAGTGGAGGATGTGTGTAATgattgggcgggggggcag
ggttcagatgaagaagaaaaaaggagtaCCCAAAAAATCC

Coding sequence (CDS) from alignment at CM002459.1:902443..904282+

>rna2661 ID=rna2661|Name=rna2661|organism=Nannochloropsis gaditana|type=CDS|length=2130bp|location=Sequence derived from alignment at CM002459.1:902443..904282+ (Nannochloropsis gaditana)
ATGCCCAAGAataaaggaaagggtggcAAAAATCGTCGCCGCGGGAAAAA
TGAGAATGAGGAGACGAAGCGAGACCTACTTTttaaggaggagggccaag
AGTATGGACAAGTGATAAAGATGCTGGGCAACGGCCGGTGCGAGGTGTAC
TGCTTTGACGGGAAGAACCGTTTGGCACACATCCGGGGGAAGATGCGGAA
GAAAGTTTGGGTGTCGGCGGGCGACATCGTCCTCTTGGGGATGCGCGACT
ACCAGGAGGACAAAGTGGATATCATCCACAAGTACAACGCGGATGAGGCA
AGGAATCTGAAGGCATTTGGAGAGCTCCCGGAGACGGCGAAAATCAATGA
GACAGCAATAGACTTGACCTTGGAGGGCGGGTCCGACTCAGAGGATGAGA
TCGGAGTGGATTTCGACGAGATTTAGATGCCCAAGAataaaggaaagggt
ggcAAAAATCGTCGCCGCGGGAAAAATGAGAATGAGGAGACGAAGCGAGA
CCTACTTTttaaggaggagggccaagAGTATGGACAAGTGATAAAGATGC
TGGGCAACGGCCGGTGCGAGGTGTACTGCTTTGACGGGAAGAACCGTTTG
GCACACATCCGGGGGAAGATGCGGAAGAAAGTTTGGGTGTCGGCGGGCGA
CATCGTCCTCTTGGGGATGCGCGACTACCAGGAGGACAAAGTGGATATCA
TCCACAAGTACAACGCGGATGAGGCAAGGAATCTGAAGGCATTTGGAGAG
CTCCCGGAGACGGCGAAAATCAATGAGACAGCAATAGACTTGACCTTGGA
GGGCGGGTCCGACTCAGAGGATGAGATCGGAGTGGATTTCGACGAGATTT
AGATGCCCAAGAataaaggaaagggtggcAAAAATCGTCGCCGCGGGAAA
AATGAGAATGAGGAGACGAAGCGAGACCTACTTTttaaggaggagggcca
agAGTATGGACAAGTGATAAAGATGCTGGGCAACGGCCGGTGCGAGGTGT
ACTGCTTTGACGGGAAGAACCGTTTGGCACACATCCGGGGGAAGATGCGG
AAGAAAGTTTGGGTGTCGGCGGGCGACATCGTCCTCTTGGGGATGCGCGA
CTACCAGGAGGACAAAGTGGATATCATCCACAAGTACAACGCGGATGAGG
CAAGGAATCTGAAGGCATTTGGAGAGCTCCCGGAGACGGCGAAAATCAAT
GAGACAGCAATAGACTTGACCTTGGAGGGCGGGTCCGACTCAGAGGATGA
GATCGGAGTGGATTTCGACGAGATTTAGATGCCCAAGAataaaggaaagg
gtggcAAAAATCGTCGCCGCGGGAAAAATGAGAATGAGGAGACGAAGCGA
GACCTACTTTttaaggaggagggccaagAGTATGGACAAGTGATAAAGAT
GCTGGGCAACGGCCGGTGCGAGGTGTACTGCTTTGACGGGAAGAACCGTT
TGGCACACATCCGGGGGAAGATGCGGAAGAAAGTTTGGGTGTCGGCGGGC
GACATCGTCCTCTTGGGGATGCGCGACTACCAGGAGGACAAAGTGGATAT
CATCCACAAGTACAACGCGGATGAGGCAAGGAATCTGAAGGCATTTGGAG
AGCTCCCGGAGACGGCGAAAATCAATGAGACAGCAATAGACTTGACCTTG
GAGGGCGGGTCCGACTCAGAGGATGAGATCGGAGTGGATTTCGACGAGAT
TTAGATGCCCAAGAataaaggaaagggtggcAAAAATCGTCGCCGCGGGA
AAAATGAGAATGAGGAGACGAAGCGAGACCTACTTTttaaggaggagggc
caagAGTATGGACAAGTGATAAAGATGCTGGGCAACGGCCGGTGCGAGGT
GTACTGCTTTGACGGGAAGAACCGTTTGGCACACATCCGGGGGAAGATGC
GGAAGAAAGTTTGGGTGTCGGCGGGCGACATCGTCCTCTTGGGGATGCGC
GACTACCAGGAGGACAAAGTGGATATCATCCACAAGTACAACGCGGATGA
GGCAAGGAATCTGAAGGCATTTGGAGAGCTCCCGGAGACGGCGAAAATCA
ATGAGACAGCAATAGACTTGACCTTGGAGGGCGGGTCCGACTCAGAGGAT
GAGATCGGAGTGGATTTCGACGAGATTTAG

Synonyms

Publications