rna2657, rna2657 (mRNA) Nannochloropsis gaditana

Overview
Namerna2657
Unique Namerna2657
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length210
Alignment locationCM002459.1:898044..898598 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100008g22.7863.mrna
Orig protein idgnl|cribi|Naga_100008g22.7863
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:898044..898598 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100008g22gene2541Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2657rna2657-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27971.1cds2649Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2657 ID=rna2657|Name=rna2657|organism=Nannochloropsis gaditana|type=mRNA|length=210bp
ATGAAAAGACACAATGCACAGCTCTGTCTCGTACCCGTCGAGGGAGCAGA
TGCAGCAGTCCACAATCTTGTAGACGCCGTCAGGGAGGGAGACCACTCCT
GTGGTGATAGAGATTGGAGAGACTCTACCAGCGTTGGCGTCGGGCTCAGG
ACTTGTGATGGAACTCGGTTGATACCAACGCTGACTTCACCACAGCTAAC
CTTCGTGTGA
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protein sequence of rna2657

>rna2657-protein ID=rna2657-protein|Name=rna2657|organism=Nannochloropsis gaditana|type=polypeptide|length=184bp
MGFGKVDVRDRVQRAGLRHVAVVEEDQDLNARLERGTHPLPAPPARRPAD
VLFTPGLDLIGQSSMKSVLAQVNDARRPFLTRPATCRMHNKLAAVAWSVS
TPQRRRKKKDEDGSEIGGEEDDEGMEEEEDDAEGMEEEEDREEVLGLCEH
PPRRGGAPICIIWGSGARGGLTLNNVLYPTGLYK
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mRNA from alignment at CM002459.1:898044..898598+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2657 ID=rna2657|Name=rna2657|organism=Nannochloropsis gaditana|type=mRNA|length=555bp|location=Sequence derived from alignment at CM002459.1:898044..898598+ (Nannochloropsis gaditana)
ATGGGCTTCGGAAAAGTAGACGTACGTGACCGGGTCCAGCGCGCGGGCCT
CCGTCACGTCGCCGTGGTGGAAGAAGATCAAGACCTCAATGCACGGCTCG
AGCGAGGGAcacaccccctccccgcaccGCCCGCCCGGAGGCCTGCGGAC
GTGCTCTTCACACCGGGCCTAGACTTGATCGGCCAGAGCTCGATGAAGAG
CGTGCTGGCGCAGGTCAACGACGCTAGGAGGCCCTTCCTCACCCGCCCCG
CCACATGCCGCATGCACAACAAgctggcggccgtggcgtgGTCAGTGTCG
ACCCctcagaggaggaggaaaaaaaaggacgaggacgggagcgagatcgg
cggggaggaggacgacgaggggatggaagaggaagaggacgacgctgagg
ggatggaggaggaggaggacagagaggaggtCCTGGGCCTCTGCGAGCAT
CCCCccaggaggggcggggcgccCATTTGCATCATCTGGGGCTCTGGCGC
CCGGGGCGGTCTCACGCTTAACAACGTGCTCTATCCTACGGGACTGTACA
AGTAG
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Coding sequence (CDS) from alignment at CM002459.1:898044..898598+

>rna2657 ID=rna2657|Name=rna2657|organism=Nannochloropsis gaditana|type=CDS|length=555bp|location=Sequence derived from alignment at CM002459.1:898044..898598+ (Nannochloropsis gaditana)
ATGGGCTTCGGAAAAGTAGACGTACGTGACCGGGTCCAGCGCGCGGGCCT
CCGTCACGTCGCCGTGGTGGAAGAAGATCAAGACCTCAATGCACGGCTCG
AGCGAGGGAcacaccccctccccgcaccGCCCGCCCGGAGGCCTGCGGAC
GTGCTCTTCACACCGGGCCTAGACTTGATCGGCCAGAGCTCGATGAAGAG
CGTGCTGGCGCAGGTCAACGACGCTAGGAGGCCCTTCCTCACCCGCCCCG
CCACATGCCGCATGCACAACAAgctggcggccgtggcgtgGTCAGTGTCG
ACCCctcagaggaggaggaaaaaaaaggacgaggacgggagcgagatcgg
cggggaggaggacgacgaggggatggaagaggaagaggacgacgctgagg
ggatggaggaggaggaggacagagaggaggtCCTGGGCCTCTGCGAGCAT
CCCCccaggaggggcggggcgccCATTTGCATCATCTGGGGCTCTGGCGC
CCGGGGCGGTCTCACGCTTAACAACGTGCTCTATCCTACGGGACTGTACA
AGTAG
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Synonyms
Publications