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Properties
| Property Name | Value |
|---|
| Product | glycosyl group 1 |
| Orig transcript id | gnl|cribi|Naga_100008g19.7846.mrna |
| Orig protein id | gnl|cribi|Naga_100008g19.7846 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002459.1 | supercontig | CM002459.1:892188..894227 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2654 ID=rna2654|Name=rna2654|organism=Nannochloropsis gaditana|type=mRNA|length=1982bp
GAGTATCAACGCATCGGCTCCTTGCGGCATCTACTTGGGATATGCGCACT
GACATTTTTTTCCTCCCAGGCACATGTGGACAACTTCGACGCAAATGGAC
AACAACAAAACCAACGTGAGTGTTTTGCCGAGCAAGTACCACGGTCGGGG
CTTGTTCGCTACCAGGGACTTTTTGCCTGGCGAGGTCATTCTCCGGGAAC
GTCCCCTCGTAGCCATGCAGAGTTTAGACAATCGGCAATACGTCCCGGCC
TGTGGAGCCTGCTTCTGCTTCATTGGCACTTGCCGGCAGCATCTCATGCT
GCTTGCGGAGGCAGGCGATCGTAGTGCTTTGATGGAGGAGGAGGAGTCAA
GACGCATGGAAGCAGAGGCCGCCACTTTTCCAGGGGCCGTGTTGGCCCCT
CTTGTGCCATGCACGATGCGCTGTGGAGAAATGTACTGCTCGCAAAAATG
CCGGGAAGAGCATTGGGATCGCGGGCACCGTCTCCTCTGCGTCGGGCACA
TTCCAGAACATGAGGCGGGTTCGCACCCCCTGGTCCAGTACAAAATGCAC
GCCTTACGGACGAATGAAATCTTTTTGCTTGTGGCGGATGTGGTGGCCTT
GATCCTCACGCGCTTTGAGAGCAATGGAGGGGATCTTTCCGCGGCTCTCT
CTCCATTCCGAGATTTTGTGCAAAGGCCCTGGTGGGACGTGGCCACCAAC
CCCGACCCCGTCCGTGACACGAGCGCCTTCCAAGATATGTTACGCGTTTT
GGTGAAGGTGGCTGCGGACTTGCTCCGACAGGCGTTGTTGACTCACCCCG
GTGCCCCGTGTGCGACCTACCGTGGCTCGGTGGAAAGTATCGTCTCCCCC
GACTTCGTGGCGGCCGTGATCGGCATGTTCGAACAGAACAACGTAGGCAT
TCGGCGTGACTCGGTGCTGTCGTCATTCCTGGTCGACCACCTCATGCCAA
ATTGTTCCATAGACTCCACGCAAGTTTATTTGCAGCTTCTCGGGCGAATC
CTAGAGGACTGGGAGGAGGGGGAGGAAGAGGACGAGGAAGGGGAGGAGGG
GGCGCCAGACGACGGCGATGAGATGTGTGTCGCGGACGCGGGCATCTCAG
GTGCAGATGCAAACGGCCACGAGCATGATCATCACCAGCACTTGGGAGCT
GTCCCGCCATGTTCTGTTTCTTCGAGACTCCCACCAGCGTCACCTTCGTC
GGCCCGCGCCTTGGTGGAAGCCTGCTTGGCGAAGAGCCAGACCAGTGAGA
TATTCTCGGCTGTGGACGGGACGGCATTGCTTTCCCTCATATGTTGCATG
AACCATTCCTGCCAAGCAAATTGTGAGGTGCGATGGGTGGGGGGTGTAGG
GGGCGCGCCCTTGATGGCCGAGCTGGTGGCAATGGAGCATCTCCCAGGAG
GCGGGGAGCTTTTCCAGAGCTATATTCGGGTCCAAGGTACTAGTGTGGAG
GATCGGAGAATCAGCTTGAAGGAGTACGGCTTCATTTGCCAATGCGCTTT
GTGTTCGAGCGGCAAGTCGGGGTAAACAAAGTGAGGAGGGCGTCCGCCCT
TTTTCAGAGCCTCTGTGGGAATGAAGACCCCACAGGGGAATATTTCTGCC
CGTGATGCTATCAACTCAGAGCTCATTTTAAAAAAAGATTTGTCGAAGTT
GTTTCCCGTCGGGCGCGATTTAAGTTGGCTCTAGATAAAACACATGGCAA
ATTTATTTCTGGTAAGCCGTTGCCCTCCGTCTTCGGTCAGCTGCATACAG
AGAGGCTCAAATAGTACGTACGAAATTATTGTAAAAGTAGCTGAAAAGTA
TACCCTTGGGATCACGTGCAATAAATCAGGCGCAAGTCGTGCGTTTTCTA
TGTTTTGTAAATCAGAGAGCTTCTTCCGGGGTCCCTCCTTCCCGTATTCA
TGAAGTCGTGATGAGTGTCTCGCCCACCGACAAGTATAGCTTCACGGACA
ATCCTCCCATAAAATTTCTGAAAAGAAGAAAA back to topprotein sequence of rna2654 >rna2654-protein ID=rna2654-protein|Name=rna2654|organism=Nannochloropsis gaditana|type=polypeptide|length=609bp
MPSGDQVPRLPHEDLEEAVVQYSEEAYDANRHKHENFDVQHPQWYPPGPS
SSSTSSVTCSTTPVLDTDEEGSGGTLGTGGAPRVVIFTAAYYVCDGVSLT
IRKLRAHLQSRGIASRVVSCGPAGWSETDVFTVPSIPLPIINADDNFGYS
LGIRLTPECKAQIKAFNPSVIHFTVPDFLALDALRWAKAERIPVMGTWHS
NYADYLQFYHLSVIRLPVERFIRSFYVNMPIYVPTPFVRKRLVDSGFPEN
RVSLWGRGVDLKMFNPNFRSMAFRRGRGIADDEVVILWVGRLVKEKSPDI
WAEVIRRLDQEGLKFRALVVGSGSYEEHMKQLPRTEHLGWMSGAALAEVY
ASVDLFLFPSEVETFGNVTLEALASGVPCIASAGCSGHLVHHGVNGFVIS
RADVDEYHSLTRELVVNGPLRARFAEKARGSIVSLEHDRVMDMMVANYEG
VVQAYHRPGGEGCNSRRGGWGDVYIMLVYHFFSFLMMLGTPLMKAYVAIA
RILCGIISCSGADWFARKMRSAAHLSRTHARKGRKWDDIARADENIGCLC
LAICAGGSVSHVHGCGLDHYYAGRARKRLNGGESVTVKYSARRSFDDESG
VPSLANVVA back to topmRNA from alignment at CM002459.1:892188..894227+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2654 ID=rna2654|Name=rna2654|organism=Nannochloropsis gaditana|type=mRNA|length=2040bp|location=Sequence derived from alignment at CM002459.1:892188..894227+ (Nannochloropsis gaditana)
ATGCCCAGCGGCGATCAAGTGCCACGTCTGCCTCATGAGGTGAGCTCTCA
AATATTTGGGGGGGATGAGACCCACTATGCCGCGCCGGAGGAGTATTTGG
AACTCCCTTTTTAGAGTAAACAAGTGTAATTGCGCTGTGAATAATGTGAT
AGAAATGAAGTGAACTCAAGAACAATGTTAACACGGACCTCCCTCTGTAT
ACTTACAGGACTTGGAAGAAGCAGTAGTGCAGTACTCGGAAGAAGCATAC
GACGCAAACCGACACAAGCATGAGAACTTTGATGTGCAGCATCCGCAGTG
GTATCCACCGGGTCCCTctagcagcagcaccagcagcgtCACCTGCTCCA
CGACGCCCGTGCTGGACacggacgaagaaggaagcgggggtACTTTGGGT
ACCGGCGGGGCGCCACGCGTGGTCATTTTCACCGCCGCCTATTATGTGTG
CGACGGAGTGAGCCTTACCATTCGGAAGCTCCGGGCGCATCTACAAAGCC
GAGGGATAGCCTCTCGGGTGGTATCATGCGGGCCTGCGGGGTGGAGCGAA
ACGGATGTCTTCACcgttccttccatccccttgcCGATCATCAACGCGGA
CGATAACTTTGGATATTCTCTGGGCATAAGACTCACACCGGAGTGCAAAG
CTCAGATCAAAGCCTTCAACCCCTCTGTCATCCACTTTACTGTCCCCGAC
TTCTTGGCCCTGGACGCGCTCCGGTGGGCGAAGGCGGAGCGAATCCCCGT
GATGGGCACCTGGCACTCCAATTATGCAGACTACCTGCAATTCTACCATT
TAAGCGTCATCCGCCTCCCGGTAGAACGCTTCATCCGCAGCTTCTACGTG
AACATGCCTATCTATGTTCCGACGCCGTTCGTGCGCAAGCGCTTGGTGGA
CAGCGGGTTCCCCGAGAATCGTGTCTCCCTCTGGGGCCGCGGGGTTGACC
TGAAAATGTTTAACCCGAACTTCCGCTCCATGGCTTTCAGGCGTGGCCGC
GGCATTGCAGACGACGAGGTGGTGATCCTGTGGGTGGGGCGACTGGTGAA
GGAAAAATCTCCGGATATATGGGCCGAGGTAATCCGACGGTTGGACCAGG
AGGGTTTGAAATTTCGAGCGTTAGTGGTGGGGTCAGGGTCTTACGAGGAG
CACATGAAGCAGCTGCCACGGACCGAGCATCTGGGATGGATGAGCGgcgc
ggccctggcggaggTCTATGCCTCCGTTGACctgttcctctttcccagcG
AGGTCGAGACCTTCGGAAATGTGACCTTGGAGGCACTGGCCAGTGGGGTG
CCATGCATTGCCTCAGCAGGCTGCTCAGGCCATCTTGTGCACCATGGAGT
CAACGGCTTTGTCATCTCTCGAGCCGACGTGGACGAGTACCATTCCTTGA
CGCGGGAGCTGGTCGTGAATGGACCTCTGCGTGCCCGCTTTGCggagaaa
gcaaggggaTCGATCGTCAGCCTTGAGCACGATCGAGTCATGGACATGAT
GGTAGCGAACTACGAGGGTGTGGTCCAGGCGTACCACCGCCCAGGTGGGG
AAGGCTGCAACAGTCGGAGGGGCGGATGGGGCGATGTTTATATTATGTTG
GTGTAtcattttttctcctttttaaTGATGCTGGGAACACCGCTGATGAA
GGCCTATGTGGCGATAGCACGCATCCTTTGTGGAATCATTTCGTGCTCGG
GTGCAGATTGGTTTGCTCGGAAGATGCGAAGCGCAGCTCACCTAGTTTGC
TCTGCGGgctgggagaggcggggTTTGCCTCTCAGTCACGGACCCATGct
cggaagggaaggaaatgggaTGACATCGCGAGAGCGGATGAGAATATTGG
TTGTTTGTGTTTGGCTATCTGTGCTGGTGGTTCTGTATCACACGTACATG
GCTGCGGGTTGGACCACTACTATGCTGGGAGAGCACGGAAACGCCTCAAC
GGAGGGGAGTCGGTAACGGTAAAATATTCAGCTCGACGCAGTTTTGATGA
CGAGTCGGGTGTGCCCTCATTAGCCAATGTGGTTGCGTAA back to topCoding sequence (CDS) from alignment at CM002459.1:892188..894227+ >rna2654 ID=rna2654|Name=rna2654|organism=Nannochloropsis gaditana|type=CDS|length=5490bp|location=Sequence derived from alignment at CM002459.1:892188..894227+ (Nannochloropsis gaditana)
ATGCCCAGCGGCGATCAAGTGCCACGTCTGCCTCATGAGGACTTGGAAGA
AGCAGTAGTGCAGTACTCGGAAGAAGCATACGACGCAAACCGACACAAGC
ATGAGAACTTTGATGTGCAGCATCCGCAGTGGTATCCACCGGGTCCCTct
agcagcagcaccagcagcgtCACCTGCTCCACGACGCCCGTGCTGGACac
ggacgaagaaggaagcgggggtACTTTGGGTACCGGCGGGGCGCCACGCG
TGGTCATTTTCACCGCCGCCTATTATGTGTGCGACGGAGTGAGCCTTACC
ATTCGGAAGCTCCGGGCGCATCTACAAAGCCGAGGGATAGCCTCTCGGGT
GGTATCATGCGGGCCTGCGGGGTGGAGCGAAACGGATGTCTTCACcgttc
cttccatccccttgcCGATCATCAACGCGGACGATAACTTTGGATATTCT
CTGGGCATAAGACTCACACCGGAGTGCAAAGCTCAGATCAAAGCCTTCAA
CCCCTCTGTCATCCACTTTACTGTCCCCGACTTCTTGGCCCTGGACGCGC
TCCGGTGGGCGAAGGCGGAGCGAATCCCCGTGATGGGCACCTGGCACTCC
AATTATGCAGACTACCTGCAATTCTACCATTTAAGCGTCATCCGCCTCCC
GGTAGAACGCTTCATCCGCAGCTTCTACGTGAACATGCCTATCTATGTTC
CGACGCCGTTCGTGCGCAAGCGCTTGGTGGACAGCGGGTTCCCCGAGAAT
CGTGTCTCCCTCTGGGGCCGCGGGGTTGACCTGAAAATGTTTAACCCGAA
CTTCCGCTCCATGGCTTTCAGGCGTGGCCGCGGCATTGCAGACGACGAGG
TGGTGATCCTGTGGGTGGGGCGACTGGTGAAGGAAAAATCTCCGGATATA
TGGGCCGAGGTAATCCGACGGTTGGACCAGGAGGGTTTGAAATTTCGAGC
GTTAGTGGTGGGGTCAGGGTCTTACGAGGAGCACATGAAGCAGCTGCCAC
GGACCGAGCATCTGGGATGGATGAGCGgcgcggccctggcggaggTCTAT
GCCTCCGTTGACctgttcctctttcccagcGAGGTCGAGACCTTCGGAAA
TGTGACCTTGGAGGCACTGGCCAGTGGGGTGCCATGCATTGCCTCAGCAG
GCTGCTCAGGCCATCTTGTGCACCATGGAGTCAACGGCTTTGTCATCTCT
CGAGCCGACGTGGACGAGTACCATTCCTTGACGCGGGAGCTGGTCGTGAA
TGGACCTCTGCGTGCCCGCTTTGCggagaaagcaaggggaTCGATCGTCA
GCCTTGAGCACGATCGAGTCATGGACATGATGGTAGCGAACTACGAGGGT
GTGGTCCAGGCGTACCACCGCCCAGGTGGGGAAGGCTGCAACAGTCGGAG
GGGCGGATGGGGCGATGTTTATATTATGTTGGTGTAtcattttttctcct
ttttaaTGATGCTGGGAACACCGCTGATGAAGGCCTATGTGGCGATAGCA
CGCATCCTTTGTGGAATCATTTCGTGCTCGGGTGCAGATTGGTTTGCTCG
GAAGATGCGAAGCGCAGCTCACCTATCACGGACCCATGctcggaagggaa
ggaaatgggaTGACATCGCGAGAGCGGATGAGAATATTGGTTGTTTGTGT
TTGGCTATCTGTGCTGGTGGTTCTGTATCACACGTACATGGCTGCGGGTT
GGACCACTACTATGCTGGGAGAGCACGGAAACGCCTCAACGGAGGGGAGT
CGGTAACGGTAAAATATTCAGCTCGACGCAGTTTTGATGACGAGTCGGGT
GTGCCCTCATTAGCCAATGTGGTTGCGTAAATGCCCAGCGGCGATCAAGT
GCCACGTCTGCCTCATGAGGACTTGGAAGAAGCAGTAGTGCAGTACTCGG
AAGAAGCATACGACGCAAACCGACACAAGCATGAGAACTTTGATGTGCAG
CATCCGCAGTGGTATCCACCGGGTCCCTctagcagcagcaccagcagcgt
CACCTGCTCCACGACGCCCGTGCTGGACacggacgaagaaggaagcgggg
gtACTTTGGGTACCGGCGGGGCGCCACGCGTGGTCATTTTCACCGCCGCC
TATTATGTGTGCGACGGAGTGAGCCTTACCATTCGGAAGCTCCGGGCGCA
TCTACAAAGCCGAGGGATAGCCTCTCGGGTGGTATCATGCGGGCCTGCGG
GGTGGAGCGAAACGGATGTCTTCACcgttccttccatccccttgcCGATC
ATCAACGCGGACGATAACTTTGGATATTCTCTGGGCATAAGACTCACACC
GGAGTGCAAAGCTCAGATCAAAGCCTTCAACCCCTCTGTCATCCACTTTA
CTGTCCCCGACTTCTTGGCCCTGGACGCGCTCCGGTGGGCGAAGGCGGAG
CGAATCCCCGTGATGGGCACCTGGCACTCCAATTATGCAGACTACCTGCA
ATTCTACCATTTAAGCGTCATCCGCCTCCCGGTAGAACGCTTCATCCGCA
GCTTCTACGTGAACATGCCTATCTATGTTCCGACGCCGTTCGTGCGCAAG
CGCTTGGTGGACAGCGGGTTCCCCGAGAATCGTGTCTCCCTCTGGGGCCG
CGGGGTTGACCTGAAAATGTTTAACCCGAACTTCCGCTCCATGGCTTTCA
GGCGTGGCCGCGGCATTGCAGACGACGAGGTGGTGATCCTGTGGGTGGGG
CGACTGGTGAAGGAAAAATCTCCGGATATATGGGCCGAGGTAATCCGACG
GTTGGACCAGGAGGGTTTGAAATTTCGAGCGTTAGTGGTGGGGTCAGGGT
CTTACGAGGAGCACATGAAGCAGCTGCCACGGACCGAGCATCTGGGATGG
ATGAGCGgcgcggccctggcggaggTCTATGCCTCCGTTGACctgttcct
ctttcccagcGAGGTCGAGACCTTCGGAAATGTGACCTTGGAGGCACTGG
CCAGTGGGGTGCCATGCATTGCCTCAGCAGGCTGCTCAGGCCATCTTGTG
CACCATGGAGTCAACGGCTTTGTCATCTCTCGAGCCGACGTGGACGAGTA
CCATTCCTTGACGCGGGAGCTGGTCGTGAATGGACCTCTGCGTGCCCGCT
TTGCggagaaagcaaggggaTCGATCGTCAGCCTTGAGCACGATCGAGTC
ATGGACATGATGGTAGCGAACTACGAGGGTGTGGTCCAGGCGTACCACCG
CCCAGGTGGGGAAGGCTGCAACAGTCGGAGGGGCGGATGGGGCGATGTTT
ATATTATGTTGGTGTAtcattttttctcctttttaaTGATGCTGGGAACA
CCGCTGATGAAGGCCTATGTGGCGATAGCACGCATCCTTTGTGGAATCAT
TTCGTGCTCGGGTGCAGATTGGTTTGCTCGGAAGATGCGAAGCGCAGCTC
ACCTATCACGGACCCATGctcggaagggaaggaaatgggaTGACATCGCG
AGAGCGGATGAGAATATTGGTTGTTTGTGTTTGGCTATCTGTGCTGGTGG
TTCTGTATCACACGTACATGGCTGCGGGTTGGACCACTACTATGCTGGGA
GAGCACGGAAACGCCTCAACGGAGGGGAGTCGGTAACGGTAAAATATTCA
GCTCGACGCAGTTTTGATGACGAGTCGGGTGTGCCCTCATTAGCCAATGT
GGTTGCGTAAATGCCCAGCGGCGATCAAGTGCCACGTCTGCCTCATGAGG
ACTTGGAAGAAGCAGTAGTGCAGTACTCGGAAGAAGCATACGACGCAAAC
CGACACAAGCATGAGAACTTTGATGTGCAGCATCCGCAGTGGTATCCACC
GGGTCCCTctagcagcagcaccagcagcgtCACCTGCTCCACGACGCCCG
TGCTGGACacggacgaagaaggaagcgggggtACTTTGGGTACCGGCGGG
GCGCCACGCGTGGTCATTTTCACCGCCGCCTATTATGTGTGCGACGGAGT
GAGCCTTACCATTCGGAAGCTCCGGGCGCATCTACAAAGCCGAGGGATAG
CCTCTCGGGTGGTATCATGCGGGCCTGCGGGGTGGAGCGAAACGGATGTC
TTCACcgttccttccatccccttgcCGATCATCAACGCGGACGATAACTT
TGGATATTCTCTGGGCATAAGACTCACACCGGAGTGCAAAGCTCAGATCA
AAGCCTTCAACCCCTCTGTCATCCACTTTACTGTCCCCGACTTCTTGGCC
CTGGACGCGCTCCGGTGGGCGAAGGCGGAGCGAATCCCCGTGATGGGCAC
CTGGCACTCCAATTATGCAGACTACCTGCAATTCTACCATTTAAGCGTCA
TCCGCCTCCCGGTAGAACGCTTCATCCGCAGCTTCTACGTGAACATGCCT
ATCTATGTTCCGACGCCGTTCGTGCGCAAGCGCTTGGTGGACAGCGGGTT
CCCCGAGAATCGTGTCTCCCTCTGGGGCCGCGGGGTTGACCTGAAAATGT
TTAACCCGAACTTCCGCTCCATGGCTTTCAGGCGTGGCCGCGGCATTGCA
GACGACGAGGTGGTGATCCTGTGGGTGGGGCGACTGGTGAAGGAAAAATC
TCCGGATATATGGGCCGAGGTAATCCGACGGTTGGACCAGGAGGGTTTGA
AATTTCGAGCGTTAGTGGTGGGGTCAGGGTCTTACGAGGAGCACATGAAG
CAGCTGCCACGGACCGAGCATCTGGGATGGATGAGCGgcgcggccctggc
ggaggTCTATGCCTCCGTTGACctgttcctctttcccagcGAGGTCGAGA
CCTTCGGAAATGTGACCTTGGAGGCACTGGCCAGTGGGGTGCCATGCATT
GCCTCAGCAGGCTGCTCAGGCCATCTTGTGCACCATGGAGTCAACGGCTT
TGTCATCTCTCGAGCCGACGTGGACGAGTACCATTCCTTGACGCGGGAGC
TGGTCGTGAATGGACCTCTGCGTGCCCGCTTTGCggagaaagcaagggga
TCGATCGTCAGCCTTGAGCACGATCGAGTCATGGACATGATGGTAGCGAA
CTACGAGGGTGTGGTCCAGGCGTACCACCGCCCAGGTGGGGAAGGCTGCA
ACAGTCGGAGGGGCGGATGGGGCGATGTTTATATTATGTTGGTGTAtcat
tttttctcctttttaaTGATGCTGGGAACACCGCTGATGAAGGCCTATGT
GGCGATAGCACGCATCCTTTGTGGAATCATTTCGTGCTCGGGTGCAGATT
GGTTTGCTCGGAAGATGCGAAGCGCAGCTCACCTATCACGGACCCATGct
cggaagggaaggaaatgggaTGACATCGCGAGAGCGGATGAGAATATTGG
TTGTTTGTGTTTGGCTATCTGTGCTGGTGGTTCTGTATCACACGTACATG
GCTGCGGGTTGGACCACTACTATGCTGGGAGAGCACGGAAACGCCTCAAC
GGAGGGGAGTCGGTAACGGTAAAATATTCAGCTCGACGCAGTTTTGATGA
CGAGTCGGGTGTGCCCTCATTAGCCAATGTGGTTGCGTAA back to top
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