rna2649, rna2649 (mRNA) Nannochloropsis gaditana

Overview
Namerna2649
Unique Namerna2649
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1667
Alignment locationCM002459.1:880420..882110 -

Link to JBrowse

Properties
Property NameValue
Productprenylcysteine oxidase
Orig transcript idgnl|cribi|Naga_100008g14.7898.mrna
Orig protein idgnl|cribi|Naga_100008g14.7898
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:880420..882110 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100008g14gene2533Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28006.1cds2641Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2649rna2649-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2649 ID=rna2649|Name=rna2649|organism=Nannochloropsis gaditana|type=mRNA|length=1667bp
GAATGTTAAAAATGCTTGTGTGGACGTGTCCAATGTGTGCTATATATTTT
GTCGGTGCGGAGCGCAAGCATGCACTGGGCTGCATGGAGATTTTGTCTTT
TTAGGAAGCCATCGCTCGTGATACTTGCCGAGTGACGGGCAGTAAGAAGT
ACTTGTTCTTACTGTGTACCATGTTCCTTCCCACGCGCTGCTTGTTAAAT
GCTTCAACCTCATAATGCAGAAACACAGGCAAGGTATAGAAGAAGGCCAT
CAATCAAGTACGCTGGGGTACATCACCTCCATTCATTGAAGATGCGTCAA
CTACCCTCTTCGTATTTTGCCGTAGCTCTCCTTGTTGCTTTTGCGACAAA
GACAGTGGTGGCAAACAGAGGACCAGGAGCATCCACAAACGGCCTTGCCT
CTCCTGCGACTCAGCCTGTCTCAACGACCTCCGGCGCCTGCACGAGGAAG
TATGGTATGGGCAGCCGCCTGCATCTTCCACACATGCACGCCCCGCACCT
ACACATTCCCAAGGGTGGCTTCCTCTTCAGTCCATTCCGTCACCACGGGG
GTGCTCATGCCGTTGGAAATCTGGCCAAAGTGACAGAAAATAGTGGGGGC
CACACGCCCTCGATATTCTCCGGAATGTCCGTCTATCATATGTTCAAGCA
TCACTCTGCCGATAGGCGCGATCAAGCTAGCGCTGCAGGCCTTGCTGTGA
GCCATCCCACGGGTGGCAGTGTGGCGACCGCTGAGCGCACACTTGGACAG
GGTGATGGCAAACAAGAAAACCAAAATTCGCCGCATTACCCGCACCTGCA
CATGAAGAGTTTCTTTCAATCCCTGAGAAGCTGGGTCTCCTTCAAACAAT
ACTGCTGCGGTGTTCGGGACTTTTTGCTCATCGCGCGTCCTCTCGAGACC
TTCCTCTTGCGCACAGGCGCCGTCCACGACCGAGACTTGAGCCGTTTCAT
CGCCCGAGCTACGGCGTTTGTGATCATCTCCATGATAATCACCTCTATAC
TCGGCACGCTGGGACTGGACACGAAGCCCATCATTGCCGGCCTGGGGGTC
TCAGGGTTCATCGTCGGTTTCGCACTGAAAGAAATTGCCACCAACGTTCT
CTCCGGGATCCTCCTCGTCTTTCAGAGGCCTTTCAAGACGGGGTGGAAAA
TCCGCGTAGGGGCCTACACGGGCACCGTGCTGTCCATCGACTCCCGCTAC
GTCCGTCTTCTCACAGAAGAAGATGCGATGATTCTCGTACCGGCCTACCA
GGTGTACACTCAGCCAATAACAGTCATCGAAAGGAAGGACAAGGCCGGCC
GTGTCATTCACTCGGCCGGCGCACACCCCGGAGTGACCCCCACGACACCT
CATCCTTCCCCCCCGCCTGCTGCTGCTGCGAAGAGCACGCCCCCTCCAAG
GTGAAGACTGCGGACCGGTATTACTTTTGTTGATATCGTGGAAGGTGGAG
GAAGTCAGGGTGGCTCTGTACTTTGGTTGCACAAAGGCGGGTCTGTGATT
TATAAATTGACATGAAAATTCTCAATAATTCAAAAAGGCTAAGAGCAACG
AATCAACTCGCACAAACAAAAAGGAAGTTGTTAACCGGTCGGCAAGGTTT
TTCAATTTCATCGTCAGCGATAACTCGACTTGCGCGTGCGCTTTCTTCTT
ATTTATTCCTCTTCATT
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protein sequence of rna2649

>rna2649-protein ID=rna2649-protein|Name=rna2649|organism=Nannochloropsis gaditana|type=polypeptide|length=515bp
MPPFPFLATTLFVLFFCTFGRPQHVAIVGAGMGGAASAYFLRELLGNNAT
ITVIEQSARVGGRAENVSYINTTTTVPLEIGASILYTGNEHLMTAVRTLK
LHAAPPVFESEAGTSGIWDGSRLVFQSSSWSFLTAMRVLWRYGLGMFRLR
RVVRQTLRKFRQIYALQGTAGSPVRVAYETPEALWGALDLLHLTKVSLRD
YLASQGVGLPDSKLVTEFVGSIQRVNYNANNDLNALAGLVSLIPMVTGEV
VSLTEGNAALAVSMLKAAEARVLQGVRVGEVEVVRGGAESGYRLVQDDGR
LVRTEGDKEKGENEAFDVVIVATPFAFSSLRVIEREKGANDERQQASALS
PPPAAFTTTHASFVQGRVRPGFFGPSTTREDRVPTSVYVVENSSVPISSL
SLHVWINATERTGIYKLFSSALLTDSFLDDMFFTGWSLLHHRKWKAYPSY
HPPEAMTPFLVVPGERICYVNALETAVSAMEISAIAAQNCALLLSRDFED
KMANVDEQREKMEEL
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mRNA from alignment at CM002459.1:880420..882110-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2649 ID=rna2649|Name=rna2649|organism=Nannochloropsis gaditana|type=mRNA|length=1691bp|location=Sequence derived from alignment at CM002459.1:880420..882110- (Nannochloropsis gaditana)
GACCATCACACTTTTTTACCCCCCCACAGGACAACTATGCCACCTTTTCC
GTTTCTGGCCACCACACTTTTCGTCCTTTTCTTTTGCACGTTTGGGCGAC
CTCAGCATGTAGCTATCGTTGGCGCAGGGATGGGCGGTGCTGCGTCTGCT
TATTTTTTGAGAGAGTTGTTGGGGAACAATGCGACGATAACCGTGATCGA
GCAGAGCGCGAGAGTGGGCGGCCGGGCCGAGAACGTGTCCTACATCAACA
CGACCACCACGGTGCCCTTAGAGATTGGGGCCTCAATCCTCTACACCGGC
AACGAGCATTTGATGACGGCGGTGCGCACACTGAAGCTTCACGCCGCCCC
GCCGGTCTTTGAGAGCGAGGCGGGCACATCGGGCATCTGGGACGGCTCTC
GGCTTGTCTTTCAGAGCTCCTCGTGGAGCTTCTTGACGGCAATGCGGGTA
CTGTGGCGATACGGACTAGGAATGTTCAGGCTGCGACGTGTCGTGCGGCA
GACATTGAGGAAATTCAGGCAAATTTATGCCCTTCAAGGTACCGCAGGCA
GCCCCGTCCGCGTCGCATATGAGACGCCGGAAGCTCTATGGGGGGCTCTA
GATCTCCTTCATTTGACCAAGGTAAGCCTGCGAGACTACTTGGCGTCCCA
AGGAGTGGGTCTTCCGGACTCGAAGCTCGTCACCGAATTCGTGGGCTCCA
TCCAGCGCGTGAATTACAACGCAAACAACGACCTGAATGCTCTGGCAGGC
CTGGTCTCCCTGATCCCCATGGTGACGGGGGAGGTAGTAAGCCTCACAGA
AGGCAACGCCGCCCTGGCCGTGTCCATGCTGAAGGCGGCTGAGGCGCGCG
TGCTGCAGGGGGTACGGGTGGGGGAGGTGGAGGTAGTGCGAGGCGGCGCC
GAAAGTGGATATCGGCTTGTCCAAGACGACGGCAGGCTCGTCCGAACAGA
GGGGGACAAGGAGAAGGGCGAAAATGAGGCGTTCGACGTGGTGATCGTCG
CGACGCCCTTCGCCTTCTCGAGCCTGCGTGTGATTGAGCGGGAAAAGGGC
GCCAACGACGAGCGCCAACAGGCCAGCGCCTTGTCCCCCCCACCCGCCGC
CTTCACCACCACCCACGCCAGCTTTGTACAGGGCCGGGTCCGCCCCGGCT
TCTTTGGACCCTCCACGACCCGCGAAGATCGCGTCCCCACCTCCGTATAC
GTGGTGGAGAACTCGAGCGTGCCCATCTCCTCCCTCTCCCTCCATGTCTG
GATCAACGCGACGGAGAGGACCGGCATCTACAAGCTCTTCAGCTCCGCCC
TCCTCACGGACTCATTTCTGGATGACATGTTCTTCACTGGGTGGAGCTTG
CTCCACCACCGTAAATGGAAAGCCTACCCCTCTTACCACCCGCCCGAAGC
CATGACCCCCTTTCTGGTCGTGCCCGGAGAGAGGATCTGTTACGTGAACG
CTCTGGAAACAGCGGTGAGTGCCATGGAAATATCTGCAATTGCGGCCCAA
AACTGTGCGCTTTTACTTTCTCGGGATTTTGAGGACAAAATGGCCAATGT
GGATGAGCAAAGAGAGAAAATGGAAGAGTTGTGATGATGAGCAGTGGGAA
AATGGAAGAAATGTGAAGGCTCGTAGCGGAACAAACAACTGTGAGATTGC
CACGTCAAAACCAGCCGAAAGAAACATGAACGCGGCGAACT
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Coding sequence (CDS) from alignment at CM002459.1:880420..882110-

>rna2649 ID=rna2649|Name=rna2649|organism=Nannochloropsis gaditana|type=CDS|length=1548bp|location=Sequence derived from alignment at CM002459.1:880420..882110- (Nannochloropsis gaditana)
ATGCCACCTTTTCCGTTTCTGGCCACCACACTTTTCGTCCTTTTCTTTTG
CACGTTTGGGCGACCTCAGCATGTAGCTATCGTTGGCGCAGGGATGGGCG
GTGCTGCGTCTGCTTATTTTTTGAGAGAGTTGTTGGGGAACAATGCGACG
ATAACCGTGATCGAGCAGAGCGCGAGAGTGGGCGGCCGGGCCGAGAACGT
GTCCTACATCAACACGACCACCACGGTGCCCTTAGAGATTGGGGCCTCAA
TCCTCTACACCGGCAACGAGCATTTGATGACGGCGGTGCGCACACTGAAG
CTTCACGCCGCCCCGCCGGTCTTTGAGAGCGAGGCGGGCACATCGGGCAT
CTGGGACGGCTCTCGGCTTGTCTTTCAGAGCTCCTCGTGGAGCTTCTTGA
CGGCAATGCGGGTACTGTGGCGATACGGACTAGGAATGTTCAGGCTGCGA
CGTGTCGTGCGGCAGACATTGAGGAAATTCAGGCAAATTTATGCCCTTCA
AGGTACCGCAGGCAGCCCCGTCCGCGTCGCATATGAGACGCCGGAAGCTC
TATGGGGGGCTCTAGATCTCCTTCATTTGACCAAGGTAAGCCTGCGAGAC
TACTTGGCGTCCCAAGGAGTGGGTCTTCCGGACTCGAAGCTCGTCACCGA
ATTCGTGGGCTCCATCCAGCGCGTGAATTACAACGCAAACAACGACCTGA
ATGCTCTGGCAGGCCTGGTCTCCCTGATCCCCATGGTGACGGGGGAGGTA
GTAAGCCTCACAGAAGGCAACGCCGCCCTGGCCGTGTCCATGCTGAAGGC
GGCTGAGGCGCGCGTGCTGCAGGGGGTACGGGTGGGGGAGGTGGAGGTAG
TGCGAGGCGGCGCCGAAAGTGGATATCGGCTTGTCCAAGACGACGGCAGG
CTCGTCCGAACAGAGGGGGACAAGGAGAAGGGCGAAAATGAGGCGTTCGA
CGTGGTGATCGTCGCGACGCCCTTCGCCTTCTCGAGCCTGCGTGTGATTG
AGCGGGAAAAGGGCGCCAACGACGAGCGCCAACAGGCCAGCGCCTTGTCC
CCCCCACCCGCCGCCTTCACCACCACCCACGCCAGCTTTGTACAGGGCCG
GGTCCGCCCCGGCTTCTTTGGACCCTCCACGACCCGCGAAGATCGCGTCC
CCACCTCCGTATACGTGGTGGAGAACTCGAGCGTGCCCATCTCCTCCCTC
TCCCTCCATGTCTGGATCAACGCGACGGAGAGGACCGGCATCTACAAGCT
CTTCAGCTCCGCCCTCCTCACGGACTCATTTCTGGATGACATGTTCTTCA
CTGGGTGGAGCTTGCTCCACCACCGTAAATGGAAAGCCTACCCCTCTTAC
CACCCGCCCGAAGCCATGACCCCCTTTCTGGTCGTGCCCGGAGAGAGGAT
CTGTTACGTGAACGCTCTGGAAACAGCGGTGAGTGCCATGGAAATATCTG
CAATTGCGGCCCAAAACTGTGCGCTTTTACTTTCTCGGGATTTTGAGGAC
AAAATGGCCAATGTGGATGAGCAAAGAGAGAAAATGGAAGAGTTGTGA
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Synonyms
Publications