rna2646, rna2646 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2646
Unique Name	rna2646
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2261
Alignment location	CM002459.1:874770..876968 +

Link to JBrowse

Properties


Property Name	Value
Product	serine protease family
Orig transcript id	gnl\|cribi\|Naga_100008g11.7822.mrna
Orig protein id	gnl\|cribi\|Naga_100008g11.7822
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:874770..876968 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100008g11	gene2530	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2646	rna2646-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27930.1	cds2638	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:874770..876968+
coding sequence from alignment at CM002459.1:874770..876968+

mRNA sequence

>rna2646 ID=rna2646|Name=rna2646|organism=Nannochloropsis gaditana|type=mRNA|length=2261bp
AAGCCACTTTCTGGCCTCCCCTAGCAGACACCCCCCCGCCGTCCATGGCG
TTTTCCGATGCATCTTCCTGTCATGAGATTGGCTTTAAGGGCAGCAGCAC
TCGTTTTTATGTTTTCCGTGTCAAGCATCAAAGTACGTGGGGTATCGCGT
GGTGCCTGCGTCCAATACGTTTCTCCCACCGTGCGCTGGCATGTGAAGAA
GCACACTGTCAACACGCATTGATATCATCTAGCCCTTATTCGATGCCTTC
GTCTCCATTTCTAACCAACTCTCAAAGGGGAGCCCGTCAACCTCTTACTC
TCATGTCAATTTGCTTTGCTCACGCTTCGCTCTCATCTGTCCAGAAGACG
TCGTGACACAGGCTGGGCCTACTCCATCGGTTCTGACCTCTCCTCCGCTG
AGGGTACGTGCAGGACATAACTCGGACAGGCAGACATCGAGCAGTGCCAC
ACCTTCTAAAGCATGTCGAATCGCTTCGCGCTCCTCGCGGACGGTGCGGA
CGACGACGAAGGGTCCCCTCAGGCGCTCGAGACGGTGGCACCGGGGGCCA
CGGGGGCTGCCAAGCGGGTAGAGACCGGCGCCCGCGGGAAAGCTGAGAAG
AAGAGCCATGGGAGTGGGCGGTCGGTGCGTGAGGGGGGGGGCAGGGAGGC
AGGAGAATGGCAGGGAAGCACGGGAACCGAAACAGCACGCGCGAGACGAA
CACCGCCAGCATGAACGACGGGATGGCACCGGTCGGGGCGGGCGTCGGCA
GCACCGGAATGGAACGGGAAAGTTCAACTGGGGAGAAGAGGCGGTGGAGC
CGATAGAGCCCCTCGCGGAGGACGAGGAAAGGGAGGAGGGAGAGGGAGAG
GGCGAGGGAGAGGGCGAGGGAGAGGATGGAAAATTGAGGGAGTCTGGGAG
GAAAGGCGAAGGGAGGGAGGAGAGCGAGCCCGAGCCGGAGCCTCCCACCA
AGTCTTACTCGGAGTACCAGGCCGAGATGGCGGAGGTGAAGCGGAAGAAC
GCCGAGCTGTTCGGCACGGCCAAGGAGAGGGAGGTGGACAGCTCGGAGCT
GTCGAAGCTCACGGTGGTGAAGCGGGAGGAGGAGGAGGAAGAAGAAGAGG
GGGAGGAGGGCGCGGGGCGGAGGAAGGCATCGGCGCAGAGGGCTTCGGGT
CGCCAGCTTTTGAACGCGAGCTTTCGGTCGGGGGGGGACTCCGGGTTTCG
GGGGGAGCGCGGAGGGCGGGGCGGGAGGGGTGGGCGCGGGGACGGACGAC
GAGGAGAAGGGGAAAGGGGTGGGCGAGGCCGAGGCCGGGGGGAGGGAGAG
CCAGGACGCAGAGGAGGACGACTGGGCGGGGAAGGGAGGGGGACGAGGGG
CGGGCGAGGGGGGCGGGGGGGAGGGGCCAGGCTGAATATTGATGACAAGA
GCATGTTTCCGACCCTATAGGGGAAGGCTAGAGGGGAGGGGATGGCAGGG
GGAGGTCCTCTTTGTGTAGGAAATCGCGATTTTAGCAGAGGGCTGCGGCC
ATCTGCGTAAGGCGGGGTGGGAGGAAGATGTTAAAGCCTGCGCATGCAGT
AATAGTAAGGAGTGTTGTGTAGATCCCAGGATAAGTGAGGAACCAAAATG
GCGGGAATTGCTGGGCTCCAAATGCTCTGGCGGGTACGATGGGTCTAGTA
CACCGGTGTGTCTCTGACCGGGGTGGCCTCTTGTCTTCCTCTGGTCCTAG
TGGCGTGGAGTCCGCTGTGAAATGGGATATAGGGTGCGAGAAGGGTGTGC
TCATTAAAGACCTGGCATGATGGCGAAGAAACTTATGGAAGGGGGGCGAA
CAGGGGGCGGGCGGCTCGAAGTGGAGAGGGAGGAGGGAAGAGCAGGCAAA
GAGCAGCCATGCATCGACCTGTGTCGAAAAGGTGAGGGCGACGCTTCTTA
GAGCTATGTCGCGCTCCTAATGAATATGGGATGTTAAAGGAGAAGGTAAT
ACCAAATAATGCGTACCGGTTAAAAGCGTGACCACATGTCTACAGCGGAG
GAGAGTCACAATCCTAACTCCGACGTGATGTCGGGATATCGATGAAGTCG
GTTGTGTGGGTACGGGGAAAGGAGACATGACTTTCCTGGAGGCCCGAATA
GTCCAACAATAAAGAATAAGCAAACAAATTACGCCAGGTCTCTGCTTTTG
TAAGTCACCATATATGCTCCATTCTCTGTTAAAATAAGTGCCTTCGGTTG
GGGTGGTGGGGGAAGCCACGCGTTTCCATTCGGAACGTGGACTGGCATCC
GCAGTGTAGAT

protein sequence of rna2646

>rna2646-protein ID=rna2646-protein|Name=rna2646|organism=Nannochloropsis gaditana|type=polypeptide|length=732bp
MPRDEPVADASGPQTSTTAPSQREAPSQPSQARPHRRPNRSGEHGSRRTR
QPRTAVRMYEQLISGIIRPPRLTYHFPRALGPTTISFSDGTECHRTDFEV
DNHRGQKLGCSLWLPSGAKAGGKWPCVVYLHGNSSSRVEAVRTHVLNAVM
ATGSALVGFDFAGCGNADGDYISLGWFEAHDTGLVLEELQRRGCGPIVLF
GRSMGAVTALQYTVKACASSPSPYAVLPAGLILDSPFSGFKRLAYDLTSK
GMVHIPRFATAAVLSFLRRSVRHRVGFDLLQLKPSKHVQRCTSVPALFFV
AEDDELIPPWHGEILERRYGGPSLGIRFVGSHNTPRPPIVYALASVFIKA
VTEGPANPMAVGLAVRLIEKTAVMTREEEEARLRVKGEQEVSPQEHDLGR
EVPCAQGEREQHQPEQRGHGQQQGAQPRRGQRQGAPRRGPFFYYYEAQDA
KSKGLQSRGGALGGGCGQGKGGQGPRNRGESPRFIHAGSHVVTNITETAK
SLISAWQASAATRMVEAVLLEEVIAVGVAIVQAKLRALVLADRPAEQRIH
TKAGANERDATADAGTPGLVPVCPYTEARILQAVAETQQELALAKGRVRV
SEGKKMTGLSSRKPLDVSLTTWESVVYAEGREHCQQTRRILGGFERLLNR
PRGPAGRNASDETIPVMCTPSISAESHIGATRREAETAEIAGNSAFATLG
TRLCCFNPRDVSLSVAHDKEFWVFPVAEAFLK

mRNA from alignment at CM002459.1:874770..876968+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2646 ID=rna2646|Name=rna2646|organism=Nannochloropsis gaditana|type=mRNA|length=2199bp|location=Sequence derived from alignment at CM002459.1:874770..876968+ (Nannochloropsis gaditana)
ATGCCAAGGGATGAACCTGTCGCGGATGCGTCGGGTCCCCAAACTAGCAC
GACAGCGCCTTCTCAACGAGAAGCCCCTTCACAGCCCTCCCAAGCACGGC
CTCACCGACGACCAAATCGCAGTGGCGAACATGGTTCTCGGCGCACCCGT
CAGCCACGCACTGCCGTTAGGATGTATGAACAATTGATCTCGGGCATTAT
TCGTCCCCCAAGACTTACGTACCACTTCCCCCGCGCATTGGGCCCCACGA
CCATTTCCTTCTCGGATGGAACAGAATGCCATCGCACAGACTTTGAGGTA
GACAATCACCGCGGCCAGAAGCTAGGCTGCAGCCTGTGGCTACCCAGTGG
CgcaaaggcaggaggaaagtggcCTTGTGTTGTCTATCTTCACGGCAATT
CAAGTAGTCGCGTTGAAGCAGTCCGTACTCATGTGCTGAACGCGGTCATG
GCGACGGGCTCTGCTCTGGTCGGGTTTGATTTTGCCGGCTGCGGGAATGC
CGATGGAGACTACATCTCCTTGGGGTGGTTCGAAGCGCACGACACGGGCC
TGGTGCTGGAAGAGCTGCAACGCCGCGGCTGCGGTCCGATCGTGCTTTTT
GGGAGATCGATGGGGGCCGTGACCGCCTTGCAGTACACCGTGAAGGCctg
tgcctcctccccatccccctacGCTGTCCTCCCGGCGGGACTCATTCTCg
actctcccttctccggtTTCAAGCGACTTGCCTACGACTTGACCTCCAAG
GGCATGGTCCATATCCCACGCTTTGCCACGGCCGCCGTCCTATCCTTTCT
CCGGCGATCCGTGCGCCACCGTGTCGGTTTCGACCTGCTCCAGCTCAAGC
CCTCTAAGCACGTACAGCGGTGTACCTCCGTTCCTGCTCTATTCTTCGTC
GCGGAAGACGATGAACTTATCCCGCCGTGGCACGGGGAGATCCTGGAGAG
GAGATACGGTGGCCCTTCCCTGGGCATTCGCTTCGTAGGGTCTCACAAca
ctcctcgtcctcccattGTGTACGCCCTCGCGAGTGTCTTCATCAAGGCG
GTGACGGAGGGGCCGGCGAATCCGATGGCGGTGGGCCTGGCCGTCCGTCT
GATCGAGAAGACGGCGGTGATGACccgtgaagaagaagaagcgcgCCTGC
GTGTCAAgggcgagcaggaggtgTCGCCTCAGGAGCATGACCTGGGCCGT
GAAGTCCCTTGTGCTCaaggcgagagggagcagCATCAGCCAGAGCAACG
GGGGCACGGGCAGCAGCAGGGAGCTCAACCCAGGAGAGGACAACGACAGG
GGGCACCGCGGCGTGGACCTTTCTTCTATTACTACGAGGCTCAGGATGCA
AAAAGCAAGGGGCTGCAATCGAGAGGTGGCGCCCTTGGTGGGGGCTgtgg
gcagggaaagggaggccaGGGTCCCAGGAACAGGGGGGAGAGCCCGCGCT
TTATCCACGCCGGGAGCCATGTCGTCACCAACATCACGGAAACGGCCAAG
TCCTTAATTTCAGCATGGCAGGCAAGTGCGGCGACCCGAATGGTGGAGGC
TGTGTTGCTGGAAGAAGTGATAGCTGTGGGTGTGGCCATCGTTCAGGCCA
AGCTGCGTGCCCTGGTCTTGGCTGACAGGCCGGCAGAGCAACGGATACAT
ACGAAAGCAGGTGCGAACGAAAGAGATGCTACCGCTGATGCAGGTACACC
TGGCCTTGTCCCTGTCTGCCCGTACACCGAAGCTCGGATACTCCAGGCGG
TAGCAGAGACCCAGCAGGAGCTCGCCCTGGCGAAGGGACGCGTCCGTGTC
TccgagggaaaaaaaatgacgGGCCTGTCTTCCAGGAAACCATTGGATGT
ATCGCTTACCACGTGGGAGTCTGTAGTATACGCGGAAGGCCGAGAGCATT
GCCAACAGACACGTCGCATCCTGGGCGGGTTCGAGCGATTGTTGAACCGA
CCTCGCGGTCCGGCGGGAAGAAATGCTTCTGATGAGACCATACCCGTGAT
GTGCACACCCTCGATATCTGCAGAATCCCATATTGGCGCCACAAGAAGAG
AGGCGGAGACAGCGGAAATTGCCGGAAACTCGGCATTTGCAACATTAGGC
ACCAGACTGTGCTGCTTTAATCCCCGCGACGTCTCCCTTTCAGTGGCGCA
CGATAAAGAGTTTTGGGTTTTTCCAGTGGCCGAGGCATTTTTGAAATAA

Coding sequence (CDS) from alignment at CM002459.1:874770..876968+

>rna2646 ID=rna2646|Name=rna2646|organism=Nannochloropsis gaditana|type=CDS|length=2199bp|location=Sequence derived from alignment at CM002459.1:874770..876968+ (Nannochloropsis gaditana)
ATGCCAAGGGATGAACCTGTCGCGGATGCGTCGGGTCCCCAAACTAGCAC
GACAGCGCCTTCTCAACGAGAAGCCCCTTCACAGCCCTCCCAAGCACGGC
CTCACCGACGACCAAATCGCAGTGGCGAACATGGTTCTCGGCGCACCCGT
CAGCCACGCACTGCCGTTAGGATGTATGAACAATTGATCTCGGGCATTAT
TCGTCCCCCAAGACTTACGTACCACTTCCCCCGCGCATTGGGCCCCACGA
CCATTTCCTTCTCGGATGGAACAGAATGCCATCGCACAGACTTTGAGGTA
GACAATCACCGCGGCCAGAAGCTAGGCTGCAGCCTGTGGCTACCCAGTGG
CgcaaaggcaggaggaaagtggcCTTGTGTTGTCTATCTTCACGGCAATT
CAAGTAGTCGCGTTGAAGCAGTCCGTACTCATGTGCTGAACGCGGTCATG
GCGACGGGCTCTGCTCTGGTCGGGTTTGATTTTGCCGGCTGCGGGAATGC
CGATGGAGACTACATCTCCTTGGGGTGGTTCGAAGCGCACGACACGGGCC
TGGTGCTGGAAGAGCTGCAACGCCGCGGCTGCGGTCCGATCGTGCTTTTT
GGGAGATCGATGGGGGCCGTGACCGCCTTGCAGTACACCGTGAAGGCctg
tgcctcctccccatccccctacGCTGTCCTCCCGGCGGGACTCATTCTCg
actctcccttctccggtTTCAAGCGACTTGCCTACGACTTGACCTCCAAG
GGCATGGTCCATATCCCACGCTTTGCCACGGCCGCCGTCCTATCCTTTCT
CCGGCGATCCGTGCGCCACCGTGTCGGTTTCGACCTGCTCCAGCTCAAGC
CCTCTAAGCACGTACAGCGGTGTACCTCCGTTCCTGCTCTATTCTTCGTC
GCGGAAGACGATGAACTTATCCCGCCGTGGCACGGGGAGATCCTGGAGAG
GAGATACGGTGGCCCTTCCCTGGGCATTCGCTTCGTAGGGTCTCACAAca
ctcctcgtcctcccattGTGTACGCCCTCGCGAGTGTCTTCATCAAGGCG
GTGACGGAGGGGCCGGCGAATCCGATGGCGGTGGGCCTGGCCGTCCGTCT
GATCGAGAAGACGGCGGTGATGACccgtgaagaagaagaagcgcgCCTGC
GTGTCAAgggcgagcaggaggtgTCGCCTCAGGAGCATGACCTGGGCCGT
GAAGTCCCTTGTGCTCaaggcgagagggagcagCATCAGCCAGAGCAACG
GGGGCACGGGCAGCAGCAGGGAGCTCAACCCAGGAGAGGACAACGACAGG
GGGCACCGCGGCGTGGACCTTTCTTCTATTACTACGAGGCTCAGGATGCA
AAAAGCAAGGGGCTGCAATCGAGAGGTGGCGCCCTTGGTGGGGGCTgtgg
gcagggaaagggaggccaGGGTCCCAGGAACAGGGGGGAGAGCCCGCGCT
TTATCCACGCCGGGAGCCATGTCGTCACCAACATCACGGAAACGGCCAAG
TCCTTAATTTCAGCATGGCAGGCAAGTGCGGCGACCCGAATGGTGGAGGC
TGTGTTGCTGGAAGAAGTGATAGCTGTGGGTGTGGCCATCGTTCAGGCCA
AGCTGCGTGCCCTGGTCTTGGCTGACAGGCCGGCAGAGCAACGGATACAT
ACGAAAGCAGGTGCGAACGAAAGAGATGCTACCGCTGATGCAGGTACACC
TGGCCTTGTCCCTGTCTGCCCGTACACCGAAGCTCGGATACTCCAGGCGG
TAGCAGAGACCCAGCAGGAGCTCGCCCTGGCGAAGGGACGCGTCCGTGTC
TccgagggaaaaaaaatgacgGGCCTGTCTTCCAGGAAACCATTGGATGT
ATCGCTTACCACGTGGGAGTCTGTAGTATACGCGGAAGGCCGAGAGCATT
GCCAACAGACACGTCGCATCCTGGGCGGGTTCGAGCGATTGTTGAACCGA
CCTCGCGGTCCGGCGGGAAGAAATGCTTCTGATGAGACCATACCCGTGAT
GTGCACACCCTCGATATCTGCAGAATCCCATATTGGCGCCACAAGAAGAG
AGGCGGAGACAGCGGAAATTGCCGGAAACTCGGCATTTGCAACATTAGGC
ACCAGACTGTGCTGCTTTAATCCCCGCGACGTCTCCCTTTCAGTGGCGCA
CGATAAAGAGTTTTGGGTTTTTCCAGTGGCCGAGGCATTTTTGAAATAA

Synonyms

Publications