rna2626, rna2626 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2626
Unique Name	rna2626
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	819
Alignment location	CM002459.1:826543..829946 +

Link to JBrowse

Properties


Property Name	Value
Product	crystal protein
Orig transcript id	gnl\|cribi\|Naga_100044g12.1082.mrna
Orig protein id	gnl\|cribi\|Naga_100044g12.1082
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:826543..829946 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100044g12	gene2511	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2626	rna2626-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28068.1	cds2618	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:826543..829946+
coding sequence from alignment at CM002459.1:826543..829946+

mRNA sequence

>rna2626 ID=rna2626|Name=rna2626|organism=Nannochloropsis gaditana|type=mRNA|length=819bp
ATGCTCACCTCCTTTGGTTTGCTCCTCCTTCTACTTGTCAAAGCGATTCA
ATGCCACAAGGGGGAAGAAACATCTCTTGCAAACTTCTCTTTTTTGAGGA
ATGTTGAAAACACGCCCGCAGACTTACGACGTCGTTTTCTCCGAGGTACT
GGCAACTTCGTCCCTTCCACGAGCAACACCAACGGAGGACAAATCATCGG
AGGAGTGCCCTGGCCCTCACAATCCGATCGCGTTCCAAGCCCAGCCGATC
GAGCAAAATATGCGCAACAAGTGAACGAACTTTTAAATGCAAATTACTTT
GTGCATGAAAACAGCTTCAATAGTATCCAACAAAAGATATATGATCGCAT
GGCTCTCTATGCCAAACTGCAGGCACGTGCAGAAGATCCCAGAGTTGTGG
CCAGCATGCAAACAGGCATCTCTAGTCCGGTCTATCAGGACCTCGAAGAC
CAAGTTGCCGATCCGAGCTTTCTAACCCGTCTCCAGGCCTACCTTTACCG
GGCGGCACCTCGCTACACCCAAACGATGGCCCGAGTCCAAGACCCTTCCT
ATGGAACTGAACTTCAGCAAAAAATGTACCGCGGAGACTTTGGACCTGGC
CCTGACGCGCCTGCACGATTGAGTGCCAAGGCCACAGCTGTGCAAACTGC
GCCACGCCCGCCAGTAAAACGTAACAAATTAAATTACCCTATTCGTCCGC
ACGTTCCTTAAAAATCAACCTTATGGAAACACGAGTTTCGATATTATTTG
AATTAATTACTTATGCTGTGCAACAATGATTTCGAGTGCTTTGGAACGAG
CGCGCAGGGGGTTTTCGCT

protein sequence of rna2626

>rna2626-protein ID=rna2626-protein|Name=rna2626|organism=Nannochloropsis gaditana|type=polypeptide|length=706bp
MRIFYGLSKSYGGGLWLLNPLTRILRFLIRCTGLHTLGRALPLGLLLALT
CGLPLAWAWRNFVTPSNWWTKRVIVDTESGPVQGFTQDKVSFYLGIPYAA
PPVGELRFAAPRPLGRRWDKRHPYDATYFRAECMQGKLHNADRPKALSED
CLFLNVWAPSTARKKKPVPVMVWLYGGAFQQGGSSKAEYYGENLAAKGVV
LVSCNYRLGALGFMVSVDDGMYGNYGLQDQRFCLEWVQRNIKGFGGDPGS
VTLFGESAGAMSVGQHLLMEGQGRLFHRVIMQSNPFSYHYRSLTVANFLG
QAVKRGVDCHDLKCLQEEPVEELLEVQDSIHGLPRSVGDFFTWGPVIKEG
PWWRAAESSGGRQRDAVPITVRQPLKALESRDFVNRVPVILGSCKDEGHM
FVYNIFPFPMPKYLYWGFVFVLFRESAPKIIRHYAEVVEKEVARQGTKRI
DYRPVLSIILNDYMFRCPTWRAAHLLQEKSVDPAAAPVYVFQFSHPTRVP
GFPECHGLSCHTSELPFVFNNLDVIHKQYAMAYEHRNASSVKDLISNILW
GLFLNLDADERLSSVMADYWAAFGKTGNPNHKGAPLHWREWKGRRRYHLQ
QNPVDDEESFGGNRDGGRDDTDFLRTLMGGTASASNRDRQRYTGERKFTE
GKMGNGRSRAQSKRKKGGTSTTIIEPHYLDLKWKPEVHLATRDCTCDFWD
GFNYKW

mRNA from alignment at CM002459.1:826543..829946+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2626 ID=rna2626|Name=rna2626|organism=Nannochloropsis gaditana|type=mRNA|length=3404bp|location=Sequence derived from alignment at CM002459.1:826543..829946+ (Nannochloropsis gaditana)
GCGTGTTTTCAACATTCCTCAAAAAAGAGAAGTTTGCAAGAGAtgtttct
tcccccttgtgGCATTGAATCGCTTTGACAagtagaaggaggagcaaacC
AAAGGAGGTGAGCATGGCCcacaggagagagggaggaggtcggaaTGGTC
CTGAATGTTGCTCGCGGAGGAATCGCAGGAATACGACGCCAGTCGTCATT
CTAAATAAATCAAAACATCCATAAAGGGGATGTGAGTCAGTAAATATGTG
TATTTGTAACCCCCCGCTCACGTTTTTTGTCGCTCGGCACGGACGTTGGG
ACTCGAGAAAGCAGCTTTCTTGCTTCACCCCTGCGAGCAACGGGCTGGTA
ACAGACGGGACACCGTCTTGCCGTCCCCGCATCTCCACTTATGATATTAA
ACATCGACAGGTATAAAGAGAGAGACCTCGTGGTTACAAAGCGTAGCCTC
GCCGCCTTGAATCAGCCGAGTGAACTTGCGGAGATGTCAGCTTCAGGCAT
GCTTTGGCGCATGTGGCACAATCCTCGCCTTCATGTCAAAAGGTTCTATG
ATGTGCCGGGATCTAACACTTTCTTCTCACCACTCGACGCATGCAGGAAC
AAAGGGCGACTCAAAAGACGTCGATCTCTACTTCATCACGCTGGCACCAT
TGTCAAGCGCCTATCTGCGAGTGGTTTATCCTTCCTCAAGAAACCTCCTG
ACACGTCGAAGCAACTTGCTGGTTGAAGGCCggtggcggggcgggggggt
gaAATAGAAAGACATTTAGGCCAAATGCGAATATTCTATGGACTTAGCAA
GTCCTATGGTGGAGGTTTATGGTTGTTGAACCCCTTGACACGGATACTGC
GATTCCTGATCCGGTGCACAGGGTTGCACACCCTAGGTCGAGCCCTGCCT
TTGGGGCTGCTCCTGGCATTGACCTGTGGCTTACCCCTAGCATGGGCCTG
GAGGAATTTTGTCACACCAAGTAACTGGTGGACAAAGCGTGTGATTGTGG
ATACGGAGTCCGGGCCTGTCCAAGGTTTCACTCAAGATAAGGTCAGCTTT
TATCTCGGAATTCCCTACGCAGCGCCTCCTGTGGGCGAACTGCGTTTCGC
CGCCCCAAGGCCACTGGGTCGGCGATGGGACAAACGACATCCCTACGATG
CCACCTACTTCCGCGCCGAATGCATGCAAGGAAAGCTGCACAACGCGGAC
CGACCCAAAGCTCTCAGTGAAGATTGCCTGTTCTTGAATGTGTGggcccc
ctccacggccaggaagaagaagcctGTGCCGGTCATGGTTTGGCTCTACG
GCGGTGCATTTCAACAAGGAGGCTCGTCCAAAGCCGAGTACTATGGAGAG
AACCTGGCTGCGAAGGGTGTGGTCCTCGTGAGCTGTAATTATCGACTGGG
AGCTCTGGGATTCATGGTCTCGGTAGACGACGGCATGTACGGGAATTACG
GGCTGCAAGACCAGCGTTTTTGCCTGGAATGGGTTCAGCGGAACATCAAA
GGCTTCGGTGGCGACCCAGGCTCTGTGACCCTCTTCGGAGAGTCTGCTGG
AGCCATGTCCGTAGGCCAGCACTTGCtcatggaggggcaggggcgctTGT
TCCACCGCGTCATAATGCAGAGCAACCCCTTCTCGTACCATTACCGGTCC
TTGACCGTGGCCAACTTCCTGGGCCAAGCCGTCAAGCGGGGTGTCGACTG
CCATGATCTCAAATGCCTCCaggaggagccggtggaggagctgctggagg
tcCAAGACAGCATCCACGGGCTCCCGCGCAGCGTCGGCGACTTTTTCACT
TGGGGACCTGTGATCAAGGAAGGGCCATGGTGGCGGGCCGCGGAGTCGAG
CGGGGGGCGGCAGCGCGATGCGGTCCCGATCACCGTGCGGCAGCCCTTGA
AAGCGCTGGAGTCGCGGGACTTCGTCAACAGGGTGCCCGTCATCTTGGGG
TCCTgcaaggacgaggggcaTATGTTCGTGTACAacatcttcccctttcc
catgccAAAGTACCTGTACTGGggcttcgtcttcgtcctcttcaggGAGA
GCGCCCCCAAGATTATTCGTCACTACgcggaagtggtggagaaggaagtc
gCGCGACAGGGCACGAAGCGAATTGACTACCGgcccgtcctctccatcat
cctcaACGACTATATGTTCCGGTGTCCGACCTGGCGGGCGGCCCATCTCT
TGCAAGAAAAGAGCGTGGACCCCGCCGCTGCTCCGGTCTACGTCTTTCAG
TTCTCCCATCCTACGCGGGTGCCCGGTTTCCCGGAGTGCCACGGCCTGTC
ATGCCACACGTCCGAgctccccttcgtcttcaacAACCTTGACGTGATTC
ATAAGCAATACGCCATGGCTTACGAGCACCGAAATGCCTCTTCAGTCAAA
GACCTGATTTCCAACATCCTATGGGGTCTCTTCCTCAACCTGGACGCGGA
CGAGCGACTCTCCTCCGTCATGGCCGACTATTGGGCGGCCTTTGGGAAGA
CGGGTAACCCAAATCACAAGGGGGCGCCTTTGCACTGGCGCGAATGGAAG
GGCCGACGACGCTACCACCTACAGCAAAATCCggtggatgatgaggagTC
TTTCGGAGGCAatagggatggaggaagggatgacaCGGACTTCCTCCGCA
CCCTCATGGGAGGCACAGCGAGTGCGAGCAACAGAGATCGGCAGAGGTAT
acgggagaaagaaaatttACAGAGGGTAAAATGGGGAATGGGAGAAGCCG
AGCTCAAAGTAAGCGGAAAAAAGGAGGTACCTCTACAACAATCATAGAGC
CGCACTACTTGGATCTGAAATGGAAGCCAGAGGTGCATTTGGCGACCAGG
GATTGCACTTGTGACTTCTGGGATGGCTTTAACTGTAAGTCCAGATGGGC
CAGACTCTCGTATCCCTGTGTGTCGTTATGAGACCTTTGATGGATAGTAG
CGTGATTTATCATGCATAATGTTGCTACATGTTAACTCACagtttttcct
ttttgctcTTCCGCTATTTCGGCAGATAAGTGGTGAGGCTGAATTCGAAA
CAAAGAGGCCTAAACATAAGCAGAAGATTGACGAACAGACGTGATAGCTT
CAGGTGAAACTTTGCGACAAAACCGAGCTCTAACGCGAAAATGAGAAAAA
GCGATGTATCCAGGACACGTGATACCGGTCTGAACATAAACAAACAAATG
TGCAATATAATCTGTTAGAATGATTTTTAAGGGAAAGGTCTGGGAAAGCG
TCAGTTTCCCGATGACAGTTGAATTTCACCAAATGTCTTCTTGTCGACCT
CATCTGCTTTAAACCTTGCTTTGCGTCGTGTCTGCATGCTTGTTCTGGAG
ATTGGCCCTTTGCTTTAAAGATTGGGTTCACCTTTCAAATGTAATATTTT
TGTC

Coding sequence (CDS) from alignment at CM002459.1:826543..829946+

>rna2626 ID=rna2626|Name=rna2626|organism=Nannochloropsis gaditana|type=CDS|length=4242bp|location=Sequence derived from alignment at CM002459.1:826543..829946+ (Nannochloropsis gaditana)
ATGCGAATATTCTATGGACTTAGCAAGTCCTATGGTGGAGGTTTATGGTT
GTTGAACCCCTTGACACGGATACTGCGATTCCTGATCCGGTGCACAGGGT
TGCACACCCTAGGTCGAGCCCTGCCTTTGGGGCTGCTCCTGGCATTGACC
TGTGGCTTACCCCTAGCATGGGCCTGGAGGAATTTTGTCACACCAAGTAA
CTGGTGGACAAAGCGTGTGATTGTGGATACGGAGTCCGGGCCTGTCCAAG
GTTTCACTCAAGATAAGGTCAGCTTTTATCTCGGAATTCCCTACGCAGCG
CCTCCTGTGGGCGAACTGCGTTTCGCCGCCCCAAGGCCACTGGGTCGGCG
ATGGGACAAACGACATCCCTACGATGCCACCTACTTCCGCGCCGAATGCA
TGCAAGGAAAGCTGCACAACGCGGACCGACCCAAAGCTCTCAGTGAAGAT
TGCCTGTTCTTGAATGTGTGggccccctccacggccaggaagaagaagcc
tGTGCCGGTCATGGTTTGGCTCTACGGCGGTGCATTTCAACAAGGAGGCT
CGTCCAAAGCCGAGTACTATGGAGAGAACCTGGCTGCGAAGGGTGTGGTC
CTCGTGAGCTGTAATTATCGACTGGGAGCTCTGGGATTCATGGTCTCGGT
AGACGACGGCATGTACGGGAATTACGGGCTGCAAGACCAGCGTTTTTGCC
TGGAATGGGTTCAGCGGAACATCAAAGGCTTCGGTGGCGACCCAGGCTCT
GTGACCCTCTTCGGAGAGTCTGCTGGAGCCATGTCCGTAGGCCAGCACTT
GCtcatggaggggcaggggcgctTGTTCCACCGCGTCATAATGCAGAGCA
ACCCCTTCTCGTACCATTACCGGTCCTTGACCGTGGCCAACTTCCTGGGC
CAAGCCGTCAAGCGGGGTGTCGACTGCCATGATCTCAAATGCCTCCagga
ggagccggtggaggagctgctggaggtcCAAGACAGCATCCACGGGCTCC
CGCGCAGCGTCGGCGACTTTTTCACTTGGGGACCTGTGATCAAGGAAGGG
CCATGGTGGCGGGCCGCGGAGTCGAGCGGGGGGCGGCAGCGCGATGCGGT
CCCGATCACCGTGCGGCAGCCCTTGAAAGCGCTGGAGTCGCGGGACTTCG
TCAACAGGGTGCCCGTCATCTTGGGGTCCTgcaaggacgaggggcaTATG
TTCGTGTACAacatcttcccctttcccatgccAAAGTACCTGTACTGGgg
cttcgtcttcgtcctcttcaggGAGAGCGCCCCCAAGATTATTCGTCACT
ACgcggaagtggtggagaaggaagtcgCGCGACAGGGCACGAAGCGAATT
GACTACCGgcccgtcctctccatcatcctcaACGACTATATGTTCCGGTG
TCCGACCTGGCGGGCGGCCCATCTCTTGCAAGAAAAGAGCGTGGACCCCG
CCGCTGCTCCGGTCTACGTCTTTCAGTTCTCCCATCCTACGCGGGTGCCC
GGTTTCCCGGAGTGCCACGGCCTGTCATGCCACACGTCCGAgctcccctt
cgtcttcaacAACCTTGACGTGATTCATAAGCAATACGCCATGGCTTACG
AGCACCGAAATGCCTCTTCAGTCAAAGACCTGATTTCCAACATCCTATGG
GGTCTCTTCCTCAACCTGGACGCGGACGAGCGACTCTCCTCCGTCATGGC
CGACTATTGGGCGGCCTTTGGGAAGACGGGTAACCCAAATCACAAGGGGG
CGCCTTTGCACTGGCGCGAATGGAAGGGCCGACGACGCTACCACCTACAG
CAAAATCCggtggatgatgaggagTCTTTCGGAGGCAatagggatggagg
aagggatgacaCGGACTTCCTCCGCACCCTCATGGGAGGCACAGCGAGTG
CGAGCAACAGAGATCGGCAGAGGTATacgggagaaagaaaatttACAGAG
GGTAAAATGGGGAATGGGAGAAGCCGAGCTCAAAGTAAGCGGAAAAAAGG
AGGTACCTCTACAACAATCATAGAGCCGCACTACTTGGATCTGAAATGGA
AGCCAGAGGTGCATTTGGCGACCAGGGATTGCACTTGTGACTTCTGGGAT
GGCTTTAACTATAAGTGGTGAATGCGAATATTCTATGGACTTAGCAAGTC
CTATGGTGGAGGTTTATGGTTGTTGAACCCCTTGACACGGATACTGCGAT
TCCTGATCCGGTGCACAGGGTTGCACACCCTAGGTCGAGCCCTGCCTTTG
GGGCTGCTCCTGGCATTGACCTGTGGCTTACCCCTAGCATGGGCCTGGAG
GAATTTTGTCACACCAAGTAACTGGTGGACAAAGCGTGTGATTGTGGATA
CGGAGTCCGGGCCTGTCCAAGGTTTCACTCAAGATAAGGTCAGCTTTTAT
CTCGGAATTCCCTACGCAGCGCCTCCTGTGGGCGAACTGCGTTTCGCCGC
CCCAAGGCCACTGGGTCGGCGATGGGACAAACGACATCCCTACGATGCCA
CCTACTTCCGCGCCGAATGCATGCAAGGAAAGCTGCACAACGCGGACCGA
CCCAAAGCTCTCAGTGAAGATTGCCTGTTCTTGAATGTGTGggccccctc
cacggccaggaagaagaagcctGTGCCGGTCATGGTTTGGCTCTACGGCG
GTGCATTTCAACAAGGAGGCTCGTCCAAAGCCGAGTACTATGGAGAGAAC
CTGGCTGCGAAGGGTGTGGTCCTCGTGAGCTGTAATTATCGACTGGGAGC
TCTGGGATTCATGGTCTCGGTAGACGACGGCATGTACGGGAATTACGGGC
TGCAAGACCAGCGTTTTTGCCTGGAATGGGTTCAGCGGAACATCAAAGGC
TTCGGTGGCGACCCAGGCTCTGTGACCCTCTTCGGAGAGTCTGCTGGAGC
CATGTCCGTAGGCCAGCACTTGCtcatggaggggcaggggcgctTGTTCC
ACCGCGTCATAATGCAGAGCAACCCCTTCTCGTACCATTACCGGTCCTTG
ACCGTGGCCAACTTCCTGGGCCAAGCCGTCAAGCGGGGTGTCGACTGCCA
TGATCTCAAATGCCTCCaggaggagccggtggaggagctgctggaggtcC
AAGACAGCATCCACGGGCTCCCGCGCAGCGTCGGCGACTTTTTCACTTGG
GGACCTGTGATCAAGGAAGGGCCATGGTGGCGGGCCGCGGAGTCGAGCGG
GGGGCGGCAGCGCGATGCGGTCCCGATCACCGTGCGGCAGCCCTTGAAAG
CGCTGGAGTCGCGGGACTTCGTCAACAGGGTGCCCGTCATCTTGGGGTCC
TgcaaggacgaggggcaTATGTTCGTGTACAacatcttcccctttcccat
gccAAAGTACCTGTACTGGggcttcgtcttcgtcctcttcaggGAGAGCG
CCCCCAAGATTATTCGTCACTACgcggaagtggtggagaaggaagtcgCG
CGACAGGGCACGAAGCGAATTGACTACCGgcccgtcctctccatcatcct
caACGACTATATGTTCCGGTGTCCGACCTGGCGGGCGGCCCATCTCTTGC
AAGAAAAGAGCGTGGACCCCGCCGCTGCTCCGGTCTACGTCTTTCAGTTC
TCCCATCCTACGCGGGTGCCCGGTTTCCCGGAGTGCCACGGCCTGTCATG
CCACACGTCCGAgctccccttcgtcttcaacAACCTTGACGTGATTCATA
AGCAATACGCCATGGCTTACGAGCACCGAAATGCCTCTTCAGTCAAAGAC
CTGATTTCCAACATCCTATGGGGTCTCTTCCTCAACCTGGACGCGGACGA
GCGACTCTCCTCCGTCATGGCCGACTATTGGGCGGCCTTTGGGAAGACGG
GTAACCCAAATCACAAGGGGGCGCCTTTGCACTGGCGCGAATGGAAGGGC
CGACGACGCTACCACCTACAGCAAAATCCggtggatgatgaggagTCTTT
CGGAGGCAatagggatggaggaagggatgacaCGGACTTCCTCCGCACCC
TCATGGGAGGCACAGCGAGTGCGAGCAACAGAGATCGGCAGAGGTATacg
ggagaaagaaaatttACAGAGGGTAAAATGGGGAATGGGAGAAGCCGAGC
TCAAAGTAAGCGGAAAAAAGGAGGTACCTCTACAACAATCATAGAGCCGC
ACTACTTGGATCTGAAATGGAAGCCAGAGGTGCATTTGGCGACCAGGGAT
TGCACTTGTGACTTCTGGGATGGCTTTAACTATAAGTGGTGA

Synonyms

Publications